mRNA_P-wetherbeei_contig5721.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5721.1.1
Unique NamemRNA_P-wetherbeei_contig5721.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5721.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5721contigP-wetherbeei_contig5721:1151..2399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1024
Hectar predicted targeting categorysignal peptide
Exons2
Cds size606
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.9410756-UTR-P-wetherbeei_contig5721:1150..15661683186848.9410756-UTR-P-wetherbeei_contig5721:1150..1566Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5721 1151..1566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.9498763-CDS-P-wetherbeei_contig5721:1566..20861683186848.9498763-CDS-P-wetherbeei_contig5721:1566..2086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5721 1567..2086 +
1683186848.9586093-CDS-P-wetherbeei_contig5721:2313..23991683186848.9586093-CDS-P-wetherbeei_contig5721:2313..2399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5721 2314..2399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5721.1.1prot_P-wetherbeei_contig5721.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5721 1567..2399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5721.1.1

>prot_P-wetherbeei_contig5721.1.1 ID=prot_P-wetherbeei_contig5721.1.1|Name=mRNA_P-wetherbeei_contig5721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=202bp
MVWSFVLGGLLGSRCEASVVLPCSYTMWPSSFSALSPGSAVLKVVQRAHA
EATERSRRGVVSNGVAPMILPAAIVQLVNEGVFLAPLASECVPLNLNGIP
GTWIGPSLGAAIAARITSYMRDCGDVVCSLWDRVMAAEDRFTADEDQIWH
LESQVATLRARNATLERKQEQHASELERLKKAIEAKRRLLRNALGRAQYH
TK
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mRNA from alignment at P-wetherbeei_contig5721:1151..2399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5721.1.1 ID=mRNA_P-wetherbeei_contig5721.1.1|Name=mRNA_P-wetherbeei_contig5721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1249bp|location=Sequence derived from alignment at P-wetherbeei_contig5721:1151..2399+ (Phaeothamnion wetherbeei SAG_119_79)
CATTAGAAATCTTTAGGCACTTTGGGACTGTCCCAGAAAATCTGACGGAA
CCCAGTGGGATAAAAAGAAGGAAAAGGAGGACGTGTGGGAAAAAAGAACG
CCGTTCGGGGGTATTGAGAAAGCGCGCGCGTATGAGAACAAAAAAAGTGA
AAGAGAAGAAGTGAGCGAGCCAAAAAAGTGCTCGCGCGGCGTTTTAACCA
TGAGAGAGTCCAACCTGGAACAGTTTCCTCTAGAAAGGCGGGCGGCATCG
CGCTTGCTTGCGCTCAGTCGATTGCTTCCTCACGCAAGCAAATTGCATTG
AGTCTCGTTTCTTGGCGACGATGGCGAAGTTGAAGCGACGTCTTGGGTGA
GATGGATCGATGTTAACTCTACATGCGCGCGCATGATGGCGGTTGGGACT
TTCCTTCAAACGTTTGATGGTTTGGAGCTTCGTTTTGGGAGGGCTTCTGG
GGTCACGGTGCGAAGCCTCTGTCGTCTTGCCGTGCAGTTATACTATGTGG
CCGTCCTCGTTTTCAGCTTTGTCGCCCGGGTCGGCGGTGCTTAAGGTTGT
GCAGCGTGCGCATGCGGAGGCGACGGAGCGGAGCCGCCGTGGCGTCGTCT
CGAACGGCGTCGCTCCGATGATTCTTCCCGCAGCTATTGTCCAGTTAGTT
AACGAGGGTGTCTTCCTCGCGCCGCTTGCGTCGGAATGTGTGCCGTTGAA
TCTCAACGGCATCCCAGGCACCTGGATCGGGCCTTCACTAGGGGCCGCCA
TCGCAGCGCGTATTACGAGCTATATGCGTGACTGCGGCGATGTGGTGTGC
TCGTTGTGGGACCGCGTCATGGCCGCGGAGGATCGCTTCACAGCCGACGA
GGACCAAATATGGCACCTTGAATCCCAAGTCGCAACTCTTCGGGCGAGAA
ATGCGACCCTGGAACGAAAGCAAGAACAACACGCCAGTGAGTCATCATTT
CAAAGTCCAGTCTTTGAATCCTACCCGATTTCCTTTGTCGGCAACCACAG
TCTTCCTGTTTCGGATCTGACGGTCAAAAGTTTTCAACAAGGAGAGACGT
TGCCGTCACGCAGCGGCGCGCCGCGGGTGGGTCCGTGTTTGTGGGTATCG
AAATCGGGTCGATTTATCTTGATGCTCCATCGATTTTCCGAAACGACTTT
TGACACGTGGCAGGTGAATTGGAAAGATTGAAAAAAGCCATCGAAGCAAA
GCGCCGTTTGCTCAGGAATGCATTGGGGAGAGCGCAGTACCACACGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5721:1151..2399+

>mRNA_P-wetherbeei_contig5721.1.1 ID=mRNA_P-wetherbeei_contig5721.1.1|Name=mRNA_P-wetherbeei_contig5721.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig5721:1151..2399+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTTGGAGCTTCGTTTTGGGAGGGCTTCTGGGGTCACGGTGCGAAGC
CTCTGTCGTCTTGCCGTGCAGTTATACTATGTGGCCGTCCTCGTTTTCAG
CTTTGTCGCCCGGGTCGGCGGTGCTTAAGGTTGTGCAGCGTGCGCATGCG
GAGGCGACGGAGCGGAGCCGCCGTGGCGTCGTCTCGAACGGCGTCGCTCC
GATGATTCTTCCCGCAGCTATTGTCCAGTTAGTTAACGAGGGTGTCTTCC
TCGCGCCGCTTGCGTCGGAATGTGTGCCGTTGAATCTCAACGGCATCCCA
GGCACCTGGATCGGGCCTTCACTAGGGGCCGCCATCGCAGCGCGTATTAC
GAGCTATATGCGTGACTGCGGCGATGTGGTGTGCTCGTTGTGGGACCGCG
TCATGGCCGCGGAGGATCGCTTCACAGCCGACGAGGACCAAATATGGCAC
CTTGAATCCCAAGTCGCAACTCTTCGGGCGAGAAATGCGACCCTGGAACG
AAAGCAAGAACAACACGCCAGTGAATTGGAAAGATTGAAAAAAGCCATCG
AAGCAAAGCGCCGTTTGCTCAGGAATGCATTGGGGAGAGCGCAGTACCAC
ACGAAG
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