mRNA_P-wetherbeei_contig57193.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57193.1.1
Unique NamemRNA_P-wetherbeei_contig57193.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A3C2B3L6_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B3L6_9ACTN)

HSP 1 Score: 162 bits (410), Expect = 1.400e-46
Identity = 78/102 (76.47%), Postives = 83/102 (81.37%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGKEPENNTKNDSLPSFNRADPNAT 306
            KTPGGVF F RRYEGNRVGPLGGMWNPVYFNYGIAVHGA+NVP  PASHGCIRIPM IADYFP LV N D V+VW    KEPE  T +D LPSFN  +P+AT
Sbjct:  163 KTPGGVFEFYRRYEGNRVGPLGGMWNPVYFNYGIAVHGARNVPREPASHGCIRIPMHIADYFPSLVDNGDRVWVWD-GVKEPEEQTDDDMLPSFNFRNPDAT 263          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A7K1B8T5_9ACTN (L,D-transpeptidase family protein n=2 Tax=root TaxID=1 RepID=A0A7K1B8T5_9ACTN)

HSP 1 Score: 159 bits (403), Expect = 1.370e-44
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGKEPENNTKNDSLPSFNRADPNAT 306
            KTPGGVF+FTRRY+G RVGPLGGM NPVYFNYGIA+HGA NVP  PASHGC+RI   +++ FP LV+ RD V+VWG +GKEPE  T+ +SLPSFNR DPNAT
Sbjct:  241 KTPGGVFQFTRRYDGKRVGPLGGMLNPVYFNYGIAIHGADNVPTHPASHGCVRIHNKLSEVFPSLVERRDRVFVWGHDGKEPEWYTREESLPSFNRPDPNAT 342          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A7X9KIL1_9ACTN (Murein L,D-transpeptidase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KIL1_9ACTN)

HSP 1 Score: 154 bits (388), Expect = 1.120e-42
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGKEPENNTKNDSLPSFNRAD 294
            KTPGGVF+FTRRYEG RVGPLGGM++PVYFNYGIA+HGA+NVP  PASHGCIRIP F++  FP LV+N D V+VW    KEPEN +KND LPSFNR D
Sbjct:  219 KTPGGVFKFTRRYEGKRVGPLGGMYDPVYFNYGIAIHGAENVPLEPASHGCIRIPKFLSTVFPALVENGDQVWVWD-GKKEPENQSKNDMLPSFNRPD 315          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A6I3F097_9ACTN (L,D-transpeptidase family protein n=4 Tax=root TaxID=1 RepID=A0A6I3F097_9ACTN)

HSP 1 Score: 148 bits (373), Expect = 1.520e-40
Identity = 69/102 (67.65%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGKEPENNTKNDSLPSFNRADPNAT 306
            KTPGGVF F RRY G R+GPLGGM NPVYFNYGIAVHGA +VP+ PASHGCIRIP +IA+YFP LV   D VYVWG +GKEPE  +K++ LP FN  + ++T
Sbjct:  212 KTPGGVFLFYRRYVGKRLGPLGGMMNPVYFNYGIAVHGADSVPNLPASHGCIRIPQWIANYFPGLVAKNDRVYVWGQDGKEPEQYSKDEMLPVFNYRNTHST 313          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A6I3WKB6_9ACTN (L,D-transpeptidase family protein n=2 Tax=root TaxID=1 RepID=A0A6I3WKB6_9ACTN)

HSP 1 Score: 145 bits (365), Expect = 5.880e-39
Identity = 70/102 (68.63%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGKEPENNTKNDSLPSFNRADPNAT 306
            KTPGGVF FTRR EG R GPLGGMWNPVYFNYGIAVHGA  +P  PASHGCIR+   I++ F D V   D VYVWG +GKEPE  TK ++LP FN  DPNAT
Sbjct:  254 KTPGGVFHFTRRVEGVRNGPLGGMWNPVYFNYGIAVHGALKIPLDPASHGCIRMHKRISETFQDYVHIGDQVYVWGQDGKEPEQYTKKETLPVFNYPDPNAT 355          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A6I3CCK7_9ACTN (L,D-transpeptidase family protein n=4 Tax=root TaxID=1 RepID=A0A6I3CCK7_9ACTN)

HSP 1 Score: 142 bits (358), Expect = 3.300e-38
Identity = 69/102 (67.65%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGKEPENNTKNDSLPSFNRADPNAT 306
            KTPGGVF+FTRR  G R+G LGGMWNPVYFN GIAVHGA N+P  PASHGCIRI   I++ F + V   D V+VWG +GKEPE  TK +SLP FNR DPNAT
Sbjct:  228 KTPGGVFKFTRRVVGLRMGSLGGMWNPVYFNKGIAVHGANNIPLDPASHGCIRIHKRISETFQNYVNIGDRVFVWGQDGKEPEAYTKEESLPVFNRRDPNAT 329          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A2E3TTJ9_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TTJ9_9ACTN)

HSP 1 Score: 136 bits (342), Expect = 1.110e-35
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNG-KEPENNTKNDSLPSFNRADPNAT 306
            KTPGGVF + R+ +G RV PLGGMW+PVYFNYGIAVHGA+NVP+ PASHGC+R+P+ I+ YF D+V   + + VW  NG KEPE  T  +SLPSF+  DPNAT
Sbjct:  245 KTPGGVFTYDRQVKGKRVSPLGGMWDPVYFNYGIAVHGAENVPNRPASHGCVRLPLHISVYFQDVVDIGERILVW--NGEKEPEQVTDRESLPSFDYPDPNAT 345          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A662E4W1_9ACTN (YkuD domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662E4W1_9ACTN)

HSP 1 Score: 132 bits (333), Expect = 2.550e-34
Identity = 65/103 (63.11%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGKEP-ENNTKNDSLPSFNRADPNAT 306
            KTPGGVF FTRR EG R G LG MWNPVYFN+GIA+HGA NVP  P SHGC+R+PM I DYF DLV + D V VW  NG++P E  T+ + LP F+ A+P+AT
Sbjct:  242 KTPGGVFEFTRRVEGIRNGALGSMWNPVYFNFGIAIHGAINVPAEPTSHGCVRLPMHIGDYFQDLVTDGDRVLVW--NGEQPPEQVTEKEMLPVFDYANPDAT 342          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: UPI00034B649D (L,D-transpeptidase family protein n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034B649D)

HSP 1 Score: 131 bits (330), Expect = 9.490e-34
Identity = 63/103 (61.17%), Postives = 79/103 (76.70%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNGK-EPENNTKNDSLPSFNRADPNAT 306
            KTPGGVF + R   G RV PLG MW+PVYFNYGIAVHGA NVP  PASHGC+RIPM I++YF D+++  D + VW  NG+ EPE+ ++ +SLPSF+  DP+AT
Sbjct:  266 KTPGGVFEYERAVTGTRVSPLGAMWDPVYFNYGIAVHGALNVPLEPASHGCVRIPMHISEYFQDVIELGDQILVW--NGEDEPEDVSERESLPSFDYPDPSAT 366          
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Match: A0A2D8HRP4_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8HRP4_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 1.730e-31
Identity = 63/101 (62.38%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHGCIRIPMFIADYFPDLVKNRDLVYVWGFNG-KEPENNTKNDSLPSFNRADPN 300
            KTPGGVF + R  EG R GPLG MWNPVYFNYGIAVHGA  VP  PASHGC+RIP+ I++YF  LV+  + V VW  NG  EPE+ T  +SLPSF+ + PN
Sbjct:  212 KTPGGVFEYRRLVEGIRNGPLGDMWNPVYFNYGIAVHGAIQVPAEPASHGCVRIPLHISEYFQSLVELGESVLVW--NGVSEPEDVTYTESLPSFDGSVPN 310          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57193.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2B3L6_9ACTN1.400e-4676.47Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7K1B8T5_9ACTN1.370e-4471.57L,D-transpeptidase family protein n=2 Tax=root Tax... [more]
A0A7X9KIL1_9ACTN1.120e-4273.47Murein L,D-transpeptidase n=2 Tax=Actinobacteria T... [more]
A0A6I3F097_9ACTN1.520e-4067.65L,D-transpeptidase family protein n=4 Tax=root Tax... [more]
A0A6I3WKB6_9ACTN5.880e-3968.63L,D-transpeptidase family protein n=2 Tax=root Tax... [more]
A0A6I3CCK7_9ACTN3.300e-3867.65L,D-transpeptidase family protein n=4 Tax=root Tax... [more]
A0A2E3TTJ9_9ACTN1.110e-3563.11Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A662E4W1_9ACTN2.550e-3463.11YkuD domain-containing protein n=1 Tax=Actinomycet... [more]
UPI00034B649D9.490e-3461.17L,D-transpeptidase family protein n=1 Tax=Ilumatob... [more]
A0A2D8HRP4_9ACTN1.730e-3162.38Uncharacterized protein n=6 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57193contigP-wetherbeei_contig57193:66..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1313172.YM304_30800
PFAMsDUF2778,PG_binding_1,YkuD
Model size447
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.18e-29
EggNOG OGsCOG1376@1|root,COG3409@1|root,COG1376@2|Bacteria,COG3409@2|Bacteria
DescriptionPeptidoglycan-binding domain 1 protein
Cds size447
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.7124045-CDS-P-wetherbeei_contig57193:65..5121683186848.7124045-CDS-P-wetherbeei_contig57193:65..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57193 66..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57193.1.1prot_P-wetherbeei_contig57193.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57193 66..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57193.1.1

>prot_P-wetherbeei_contig57193.1.1 ID=prot_P-wetherbeei_contig57193.1.1|Name=mRNA_P-wetherbeei_contig57193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
KTPGGVFRFTRRYEGNRVGPLGGMWNPVYFNYGIAVHGAKNVPDTPASHG
CIRIPMFIADYFPDLVKNRDLVYVWGFNGKEPENNTKNDSLPSFNRADPN
ATTTTSSTTTTSTTTPATTTTVKSTTTTAKPPSTTTTTTTTVAAPPGT*
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mRNA from alignment at P-wetherbeei_contig57193:66..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57193.1.1 ID=mRNA_P-wetherbeei_contig57193.1.1|Name=mRNA_P-wetherbeei_contig57193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig57193:66..512- (Phaeothamnion wetherbeei SAG_119_79)
AAGACGCCCGGCGGCGTGTTCCGCTTCACCCGCCGGTACGAAGGCAACCG CGTCGGCCCGCTCGGTGGCATGTGGAACCCGGTGTACTTCAACTACGGCA TCGCCGTGCACGGCGCGAAGAACGTGCCCGACACGCCGGCCTCGCACGGC TGCATCCGCATCCCGATGTTCATCGCCGACTACTTCCCGGATCTGGTCAA GAACCGTGATCTGGTCTACGTGTGGGGGTTCAACGGCAAGGAGCCGGAGA ACAACACGAAGAACGACAGCCTGCCGTCGTTCAACCGTGCCGATCCGAAC GCCACCACGACGACCAGCAGCACCACCACGACCAGCACGACGACGCCGGC CACCACGACGACGGTGAAGTCCACCACGACGACGGCCAAGCCGCCGTCCA CCACGACGACCACCACGACCACCGTCGCTGCGCCGCCGGGTACGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57193:66..512-

>mRNA_P-wetherbeei_contig57193.1.1 ID=mRNA_P-wetherbeei_contig57193.1.1|Name=mRNA_P-wetherbeei_contig57193.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig57193:66..512- (Phaeothamnion wetherbeei SAG_119_79)
AAGACGCCCGGCGGCGTGTTCCGCTTCACCCGCCGGTACGAAGGCAACCG
CGTCGGCCCGCTCGGTGGCATGTGGAACCCGGTGTACTTCAACTACGGCA
TCGCCGTGCACGGCGCGAAGAACGTGCCCGACACGCCGGCCTCGCACGGC
TGCATCCGCATCCCGATGTTCATCGCCGACTACTTCCCGGATCTGGTCAA
GAACCGTGATCTGGTCTACGTGTGGGGGTTCAACGGCAAGGAGCCGGAGA
ACAACACGAAGAACGACAGCCTGCCGTCGTTCAACCGTGCCGATCCGAAC
GCCACCACGACGACCAGCAGCACCACCACGACCAGCACGACGACGCCGGC
CACCACGACGACGGTGAAGTCCACCACGACGACGGCCAAGCCGCCGTCCA
CCACGACGACCACCACGACCACCGTCGCTGCGCCGCCGGGTACGTAG
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