mRNA_P-wetherbeei_contig57183.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57183.1.1
Unique NamemRNA_P-wetherbeei_contig57183.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: A0A358B7T3_9BURK (IclR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. TaxID=1904254 RepID=A0A358B7T3_9BURK)

HSP 1 Score: 330 bits (846), Expect = 5.670e-113
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
Query:    1 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTDPV 510
            DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTDPV
Sbjct:   14 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTDPV 183          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: A0A1F8VSY8_9BURK (IclR-ED domain-containing protein n=4 Tax=Comamonadaceae TaxID=80864 RepID=A0A1F8VSY8_9BURK)

HSP 1 Score: 295 bits (755), Expect = 4.020e-99
Identity = 150/170 (88.24%), Postives = 159/170 (93.53%), Query Frame = 1
Query:    1 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTDPV 510
            DLIAGLAKGL LIEAFDD HARLTSSEAARRVGISPAAARRCLLTLC GGYA+TDGKRFWL+HG+LRL+YAY+ STRLPRLLQPTLDALSERTRESASV VLHG E MVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSS+  A+FE+LF AMPL RLTPHT+TDPV
Sbjct:   14 DLIAGLAKGLRLIEAFDDMHARLTSSEAARRVGISPAAARRCLLTLCHGGYAQTDGKRFWLNHGILRLSYAYAASTRLPRLLQPTLDALSERTRESASVAVLHGTEVMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSRPAAEFETLFKAMPLSRLTPHTITDPV 183          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: A0A315EKJ4_9BURK (IclR-ED domain-containing protein n=1 Tax=Limnohabitans curvus TaxID=323423 RepID=A0A315EKJ4_9BURK)

HSP 1 Score: 217 bits (553), Expect = 1.770e-68
Identity = 112/166 (67.47%), Postives = 133/166 (80.12%), Query Frame = 1
Query:    7 IAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTD 504
            IAGLAKGL ++ AF+  + RLT S+AAR VGI+PAAARR LLTLC  GY  TDGK FW DHGVLRLAYAY+++TRLPRLLQP LDALSERTRESAS+ VLH    +VAARSTA++SLTVGLGVGS+LPLHCSATGRVLL++      E++     L ++TPHT T+
Sbjct:   14 IAGLAKGLQILSAFNGAYTRLTQSQAARLVGITPAAARRSLLTLCDQGYVATDGKYFWPDHGVLRLAYAYASATRLPRLLQPALDALSERTRESASIAVLHNQYVLVAARSTAQRSLTVGLGVGSQLPLHCSATGRVLLAAHPIKTREAMLKKSTLLKMTPHTETN 179          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: UPI001918AB46 (helix-turn-helix domain-containing protein n=1 Tax=Ramlibacter sp. AW1 TaxID=2801330 RepID=UPI001918AB46)

HSP 1 Score: 210 bits (535), Expect = 9.480e-66
Identity = 107/168 (63.69%), Postives = 129/168 (76.79%), Query Frame = 1
Query:    1 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTD 504
            D IAGLAKGL L+EAFD  H R+T +EAARR+ +S AAARRCLLTLC+ GY +TDGK FWL HG LR++YAY+ STRLPRL+QP LD+LSER+R+SAS+ VLH    ++AARSTAR++  VGLGVGSRLPLHCSA GRVLL+   GA    L  +      TP T+TD
Sbjct:   12 DRIAGLAKGLRLLEAFDSAHTRMTITEAARRIDVSLAAARRCLLTLCELGYMQTDGKHFWLGHGALRISYAYAASTRLPRLVQPALDSLSERSRDSASLAVLHEGAVVIAARSTARRTFRVGLGVGSRLPLHCSAAGRVLLADLPGAQARKLLASTQREAFTPRTVTD 179          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: UPI0010F6A3F0 (helix-turn-helix domain-containing protein n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI0010F6A3F0)

HSP 1 Score: 201 bits (510), Expect = 5.800e-62
Identity = 100/168 (59.52%), Postives = 134/168 (79.76%), Query Frame = 1
Query:    1 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTD 504
            D + GL KG+ ++EAFD  H R+T +EAA RVG+SPA+ARRCL+TLC+ GYA+TDGKR+WL HG LRL+YAY++ST+LPRL+QP LDA+SER+RESAS+ VL    A++AARSTAR++L +GL VGSRLPL+CSA GR LL+S   ++  ++   M   +LT +T+TD
Sbjct:   11 DHMGGLKKGIRILEAFDSIHTRMTVTEAALRVGLSPASARRCLITLCELGYAQTDGKRYWLGHGALRLSYAYASSTKLPRLIQPVLDAMSERSRESASLAVLLDGAAVIAARSTARRTLRIGLVVGSRLPLYCSAAGRALLASLPESEAVAMLRGMERPKLTVNTVTD 178          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: A0A3P4B1P2_9BURK (Pca regulon regulatory protein n=1 Tax=Pigmentiphaga humi TaxID=2478468 RepID=A0A3P4B1P2_9BURK)

HSP 1 Score: 196 bits (497), Expect = 6.460e-60
Identity = 99/166 (59.64%), Postives = 127/166 (76.51%), Query Frame = 1
Query:    1 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTL 498
            D + GL KGL LIEAFD  H R+T +EAA RVGISPAAARRCLLTLC+ GYA+TDGK++WL HG LR+AYAY+ STRLPR+LQP LDAL+ERTRES S+ VL G    +AAR+TAR+++ VGL +GS LPL CS+ GRVL+++    ++ +L  +  +   T HT+
Sbjct:   18 DRMGGLVKGLQLIEAFDSAHGRMTPTEAALRVGISPAAARRCLLTLCELGYAQTDGKQYWLSHGALRVAYAYAASTRLPRMLQPALDALTERTRESGSLCVLDGNRVAIAARATARRTMRVGLVMGSHLPLFCSSGGRVLMAALRDDEWRALVASAAMEPYTRHTV 183          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: UPI00131A98F0 (helix-turn-helix domain-containing protein n=1 Tax=Xenophilus sp. L33 TaxID=1747220 RepID=UPI00131A98F0)

HSP 1 Score: 169 bits (428), Expect = 2.080e-49
Identity = 89/168 (52.98%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTD 504
            D +  L KGL ++  F  +HARLT S+AAR  G+SPA+ARR L+TL    Y  +DGK FW++  VL +A +Y  S  +P L QP LDALSERTRESAS+ +L   +A++ ARST R+SL+ GLG+GSRLP HCSA GRVLL+S    +  S    MP  +LTPHT+ D
Sbjct:   22 DFVGSLGKGLEVMACFGRQHARLTVSQAARLTGVSPASARRSLMTLAALSYLGSDGKHFWMEPKVLLIAQSYLASRPMPSLAQPLLDALSERTRESASLALLQDDDAIIVARSTGRRSLSTGLGIGSRLPAHCSALGRVLLASLPPDEAASRVARMPRNKLTPHTVDD 189          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: UPI001EFFA272 (helix-turn-helix domain-containing protein n=1 Tax=Pleomorphomonas sp. COJ-58 TaxID=2766474 RepID=UPI001EFFA272)

HSP 1 Score: 169 bits (427), Expect = 2.100e-49
Identity = 93/168 (55.36%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTD 504
            D + GLA+GL +IE FDDEH RLT +E A   G+S AAARR LLTL + GYAR+DG+ F L   +LRL YA+  ST LP+L+QP L+ LSER  ES S  V  G + +  ARS  R+ ++VGL VGSRLPLHC++ GRVLLS    +D  +L  A PL RLTPHT  D
Sbjct:   11 DFVGGLARGLKVIECFDDEHERLTIAEVAGLTGLSRAAARRSLLTLERLGYARSDGRGFCLTPRILRLGYAFLESTALPQLMQPFLEHLSERLNESCSASVRDGDQLVYIARSATRRIVSVGLAVGSRLPLHCTSMGRVLLSGMPRSDMIALLKAEPLRRLTPHTQID 178          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: A0A370JWC1_9DEIN (IclR family transcriptional regulator n=1 Tax=Meiothermus sp. QL-1 TaxID=2058095 RepID=A0A370JWC1_9DEIN)

HSP 1 Score: 165 bits (418), Expect = 6.130e-48
Identity = 87/167 (52.10%), Postives = 114/167 (68.26%), Query Frame = 1
Query:    7 IAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTDP 507
            +  LA+GL++I  FD++H RLT SE AR  G++ A ARR LLTLC  GY  TDGK+FWL   +L L +AY +ST LPRLLQP L+ +S +  ES S  +L G E +  AR+  R+ ++VGLGVGSRLP +C++ GRVLL++   A  E+     PL  LTPHTLTDP
Sbjct:   22 VEALARGLAVIRCFDEQHERLTISEVARLTGLTRATARRSLLTLCALGYMATDGKQFWLTPRILSLGHAYLSSTPLPRLLQPVLEEVSGQLGESCSASILDGGEIVYIARAATRRVVSVGLGVGSRLPAYCTSMGRVLLAALEPAALEAYLARTPLRPLTPHTLTDP 188          
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Match: A0A323U476_9DEIN (IclR family transcriptional regulator n=1 Tax=Meiothermus sp. Pnk-1 TaxID=873128 RepID=A0A323U476_9DEIN)

HSP 1 Score: 164 bits (416), Expect = 1.230e-47
Identity = 88/167 (52.69%), Postives = 112/167 (67.07%), Query Frame = 1
Query:    7 IAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGGYARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVVVLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFESLFNAMPLCRLTPHTLTDP 507
            +  LA+GLS+I  FD+ H RLT SE AR  G+S A ARR LLTL   GY  TDGK FWL   +L L +AY +ST LPRLLQP L+ +S +  ES S  +L G E +  AR+  R+ ++VGLGVGSRLP +C++ GRVLL++   A+ E+     PL  LTPHTLTDP
Sbjct:   22 VEALARGLSVIRCFDEGHERLTISEVARLTGLSRATARRSLLTLHTLGYVATDGKLFWLTPKILSLGHAYLSSTPLPRLLQPVLEEVSAQLHESCSASILDGGEIVYIARAATRRVISVGLGVGSRLPAYCTSMGRVLLAALEPAELEAYLQRTPLRPLTPHTLTDP 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57183.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A358B7T3_9BURK5.670e-113100.00IclR family transcriptional regulator n=1 Tax=Hydr... [more]
A0A1F8VSY8_9BURK4.020e-9988.24IclR-ED domain-containing protein n=4 Tax=Comamona... [more]
A0A315EKJ4_9BURK1.770e-6867.47IclR-ED domain-containing protein n=1 Tax=Limnohab... [more]
UPI001918AB469.480e-6663.69helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI0010F6A3F05.800e-6259.52helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A3P4B1P2_9BURK6.460e-6059.64Pca regulon regulatory protein n=1 Tax=Pigmentipha... [more]
UPI00131A98F02.080e-4952.98helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001EFFA2722.100e-4955.36helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A370JWC1_9DEIN6.130e-4852.10IclR family transcriptional regulator n=1 Tax=Meio... [more]
A0A323U476_9DEIN1.230e-4752.69IclR family transcriptional regulator n=1 Tax=Meio... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57183contigP-wetherbeei_contig57183:2..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1122223.KB890687_gene2931
PFAMsHTH_IclR,IclR
Model size510
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K02624,ko:K13641
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.14e-47
EggNOG OGsCOG1414@1|root,COG1414@2|Bacteria,1WIBR@1297|Deinococcus-Thermus
Descriptiontranscriptional regulator
Cds size510
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.6405816-CDS-P-wetherbeei_contig57183:1..5111683186848.6405816-CDS-P-wetherbeei_contig57183:1..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57183 2..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57183.1.1prot_P-wetherbeei_contig57183.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57183 2..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57183.1.1

>prot_P-wetherbeei_contig57183.1.1 ID=prot_P-wetherbeei_contig57183.1.1|Name=mRNA_P-wetherbeei_contig57183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
DLIAGLAKGLSLIEAFDDEHARLTSSEAARRVGISPAAARRCLLTLCQGG
YARTDGKRFWLDHGVLRLAYAYSTSTRLPRLLQPTLDALSERTRESASVV
VLHGMEAMVAARSTARKSLTVGLGVGSRLPLHCSATGRVLLSSKSGADFE
SLFNAMPLCRLTPHTLTDPV
back to top

mRNA from alignment at P-wetherbeei_contig57183:2..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57183.1.1 ID=mRNA_P-wetherbeei_contig57183.1.1|Name=mRNA_P-wetherbeei_contig57183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57183:2..511- (Phaeothamnion wetherbeei SAG_119_79)
GACCTGATCGCTGGCCTCGCCAAGGGGCTGAGCCTGATCGAAGCTTTCGA CGATGAGCATGCGCGGCTAACCTCGTCTGAGGCGGCTCGTCGGGTCGGTA TCAGCCCTGCGGCCGCGCGACGTTGTCTGCTGACACTGTGCCAAGGGGGT TACGCGCGGACCGATGGCAAACGCTTCTGGCTTGATCACGGAGTTCTGCG CTTGGCCTATGCGTATTCGACCTCGACCCGATTACCTCGCTTGTTGCAGC CCACGCTGGATGCCTTGAGCGAGCGGACCCGAGAATCGGCTTCGGTGGTC GTGCTTCATGGAATGGAAGCAATGGTCGCGGCCCGCTCCACCGCGCGCAA GAGTTTGACGGTGGGTCTGGGCGTTGGCTCACGATTGCCGCTGCACTGCT CAGCGACTGGACGTGTGCTATTGAGTTCAAAGTCGGGTGCCGACTTTGAA TCACTTTTCAATGCCATGCCACTGTGTCGGCTGACGCCGCACACTCTCAC GGACCCTGTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57183:2..511-

>mRNA_P-wetherbeei_contig57183.1.1 ID=mRNA_P-wetherbeei_contig57183.1.1|Name=mRNA_P-wetherbeei_contig57183.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57183:2..511- (Phaeothamnion wetherbeei SAG_119_79)
GACCTGATCGCTGGCCTCGCCAAGGGGCTGAGCCTGATCGAAGCTTTCGA
CGATGAGCATGCGCGGCTAACCTCGTCTGAGGCGGCTCGTCGGGTCGGTA
TCAGCCCTGCGGCCGCGCGACGTTGTCTGCTGACACTGTGCCAAGGGGGT
TACGCGCGGACCGATGGCAAACGCTTCTGGCTTGATCACGGAGTTCTGCG
CTTGGCCTATGCGTATTCGACCTCGACCCGATTACCTCGCTTGTTGCAGC
CCACGCTGGATGCCTTGAGCGAGCGGACCCGAGAATCGGCTTCGGTGGTC
GTGCTTCATGGAATGGAAGCAATGGTCGCGGCCCGCTCCACCGCGCGCAA
GAGTTTGACGGTGGGTCTGGGCGTTGGCTCACGATTGCCGCTGCACTGCT
CAGCGACTGGACGTGTGCTATTGAGTTCAAAGTCGGGTGCCGACTTTGAA
TCACTTTTCAATGCCATGCCACTGTGTCGGCTGACGCCGCACACTCTCAC
GGACCCTGTG
back to top