mRNA_P-wetherbeei_contig57179.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57179.1.1
Unique NamemRNA_P-wetherbeei_contig57179.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: UPI00164EA87E (thiolase family protein n=1 Tax=Ramlibacter sp. GTP1 TaxID=2079448 RepID=UPI00164EA87E)

HSP 1 Score: 272 bits (696), Expect = 3.210e-88
Identity = 140/170 (82.35%), Postives = 156/170 (91.76%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            TADAV AALADAGL A  IQAAF+SN TQGVLEGQTMVRGQ+ALR +G++G+PVYNLENACASASSAFNLAVQAVR+GEV+VALA+GAEKMF  DKA+MFSVFDGAWDV  ++ +KA LL +G+GVEPP GSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAV+AKN
Sbjct:   16 TADAVTAALADAGLEASDIQAAFFSNATQGVLEGQTMVRGQIALRPLGIQGVPVYNLENACASASSAFNLAVQAVRSGEVDVALAVGAEKMFCTDKARMFSVFDGAWDVQDIERNKAALLSLGRGVEPPEGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVSAKN 185          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A7Y6NQI9_9BURK (Thiolase family protein n=5 Tax=Betaproteobacteria TaxID=28216 RepID=A0A7Y6NQI9_9BURK)

HSP 1 Score: 273 bits (697), Expect = 3.740e-88
Identity = 142/170 (83.53%), Postives = 154/170 (90.59%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            TADAV AALADAGLA   IQAA++SN TQGVLEGQTMVRGQ+ALR +G+EGIPVYNLENACASASSAFNLAVQAVR+GEVEVALA+GAEKMF  DKAKMFSVFDGAWD+  ++ +K  LL MG G+EPP GSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN
Sbjct:   33 TADAVTAALADAGLAVADIQAAYFSNATQGVLEGQTMVRGQIALRPLGIEGIPVYNLENACASASSAFNLAVQAVRSGEVEVALAVGAEKMFCTDKAKMFSVFDGAWDLQDIEGNKTTLLAMGHGIEPPDGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 202          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A0R3QAI3_9BILA (Thiolase_N domain-containing protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3QAI3_9BILA)

HSP 1 Score: 274 bits (700), Expect = 3.900e-87
Identity = 142/170 (83.53%), Postives = 155/170 (91.18%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            TADAV AALADAGLA   IQAA++SN TQGVLEGQTMVRGQ+ALR +G+EGIPVYNLENACASASSAFNLAVQAVR+GEVEVALA+GAEKMF  DKAKMFSVFDGAWD+  ++ +K  LL MG+G+EPP GSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN
Sbjct:  266 TADAVTAALADAGLAVADIQAAYFSNATQGVLEGQTMVRGQIALRPLGIEGIPVYNLENACASASSAFNLAVQAVRSGEVEVALAVGAEKMFCTDKAKMFSVFDGAWDLQDIEGNKTTLLAMGRGIEPPDGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 435          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A562ZSJ9_9BURK (Thiolase family protein n=1 Tax=Caenimonas sp. HX-9-20 TaxID=2596921 RepID=A0A562ZSJ9_9BURK)

HSP 1 Score: 259 bits (661), Expect = 9.300e-83
Identity = 134/170 (78.82%), Postives = 152/170 (89.41%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            TADAV AALADAGL    IQ+AF+SN TQGVLEGQTMVRGQ+ALRSMG+E IPVYN+ENACASASSAFNLAVQ VR+GE ++ALA+GAEKMF  DKA+MFSVFDGAWD+  ++A+K  LL +G+G+ PP GSTSKAPYSLFMDIYAAFGRFHMREFG+TQRQFAAVAAKN
Sbjct:   30 TADAVNAALADAGLQLADIQSAFFSNATQGVLEGQTMVRGQIALRSMGIESIPVYNIENACASASSAFNLAVQYVRSGEGDIALAVGAEKMFCADKARMFSVFDGAWDLSTIEANKRSLLALGEGITPPEGSTSKAPYSLFMDIYAAFGRFHMREFGSTQRQFAAVAAKN 199          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A369AQT1_9BURK (Acetyl-CoA acetyltransferase n=2 Tax=Extensimonas TaxID=1434001 RepID=A0A369AQT1_9BURK)

HSP 1 Score: 249 bits (636), Expect = 5.470e-79
Identity = 130/170 (76.47%), Postives = 146/170 (85.88%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            TADAV AALADAGL    I++AF+SN TQG LEGQTMVRGQ+ALR+MG E IP++N+ENACASASSAF+LAVQ VR+G  E+ALA+GAEKMF  DKAKMF VFDGAWDV  V+ +K+ LL MG GV PP GSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQ AAV+AKN
Sbjct:   30 TADAVHAALADAGLTVADIESAFFSNATQGALEGQTMVRGQIALRTMGFEAIPIFNVENACASASSAFHLAVQYVRSGAGEIALAVGAEKMFCTDKAKMFGVFDGAWDVSTVEQNKSTLLQMGHGVVPPEGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQIAAVSAKN 199          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A1B3M034_9BURK (3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein n=15 Tax=Proteobacteria TaxID=1224 RepID=A0A1B3M034_9BURK)

HSP 1 Score: 248 bits (634), Expect = 1.090e-78
Identity = 131/170 (77.06%), Postives = 145/170 (85.29%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            TA AV AALADAGL+   IQ+A++SN TQG LEGQTM+RGQV LRSMG E IP++N+ENACASASSAFNLAVQ VR+G  E+ALAIGAEKMF  DKAKMFSVFDGAWDV  V+ +K  LL MG G+EPP GS SKAPYSLFMDIYAAFGRFHMREFGTTQRQ AAV+AKN
Sbjct:   30 TAAAVNAALADAGLSISDIQSAYFSNATQGALEGQTMIRGQVVLRSMGFESIPIFNIENACASASSAFNLAVQYVRSGAGEIALAIGAEKMFCADKAKMFSVFDGAWDVATVEENKRRLLQMGHGIEPPEGSMSKAPYSLFMDIYAAFGRFHMREFGTTQRQIAAVSAKN 199          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A4V1ABP4_HYDPS (Acetyl-CoA acetyltransferase n=1 Tax=Hydrogenophaga pseudoflava TaxID=47421 RepID=A0A4V1ABP4_HYDPS)

HSP 1 Score: 244 bits (623), Expect = 4.970e-77
Identity = 128/170 (75.29%), Postives = 144/170 (84.71%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            TA AV AAL DAG A   IQ+A++SN TQGVLEGQ+M+RGQ+ALRSMG E IP++N+ENACAS SSAF+LAVQ VR+G  E+ALA+GAEKMF  DKAKMFSVFDGAWDV  V+ +K  LL MG GVEPP GS SKAPYSLFMDIYAAFGRFHMREFGTTQRQ AAV+AKN
Sbjct:   30 TAAAVHAALTDAGFATSDIQSAYFSNATQGVLEGQSMIRGQIALRSMGFESIPIFNIENACASGSSAFSLAVQYVRSGAGEIALAVGAEKMFCTDKAKMFSVFDGAWDVATVEENKRNLLQMGHGVEPPEGSMSKAPYSLFMDIYAAFGRFHMREFGTTQRQIAAVSAKN 199          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: UPI0005B330E6 (thiolase family protein n=2 Tax=Cupriavidus TaxID=106589 RepID=UPI0005B330E6)

HSP 1 Score: 227 bits (579), Expect = 1.960e-70
Identity = 118/170 (69.41%), Postives = 139/170 (81.76%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            T +AV  AL DAG  AG +QAAF+SN TQG +EGQ M+RG+VALRSMG++GIPV N+ENACASASSA +LA+Q V+AG  E+ALA+GAEKMF+ DKA+  SVFDGAWDVH   A  A LL MG+GV+ P GS+S  PYS+FMDIYAA GR HMREFGTTQRQFAAV+AKN
Sbjct:   27 TREAVTMALKDAGCEAGALQAAFFSNCTQGHMEGQDMIRGEVALRSMGIQGIPVLNIENACASASSALHLAIQYVKAGAAEIALAVGAEKMFSADKARTLSVFDGAWDVHEKAAGTAGLLAMGQGVDVPPGSSSPRPYSVFMDIYAAMGRMHMREFGTTQRQFAAVSAKN 196          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A0F0F0R1_9BURK (Thiolase n=3 Tax=Burkholderiaceae TaxID=119060 RepID=A0A0F0F0R1_9BURK)

HSP 1 Score: 225 bits (573), Expect = 1.560e-69
Identity = 117/170 (68.82%), Postives = 138/170 (81.18%), Query Frame = 1
Query:    1 TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            T +AV +AL DAG  A  +Q AF++N TQG +EGQ M+RGQ+ALRSMG++GIPV N+ENACASASSA +LAVQ V+AG  ++ LA+GAEKMF+ DKA+  SVFDGAWDVH  +A  A LL MG GVE PAGSTS  PYS+FMDIYAA GR HMREFGTTQRQFAAV+AKN
Sbjct:   27 TREAVTSALKDAGCEARALQGAFFANCTQGHMEGQDMIRGQIALRSMGIQGIPVINVENACASASSALHLAVQYVKAGAADIVLAVGAEKMFSSDKARTLSVFDGAWDVHDKEAGTARLLAMGDGVEVPAGSTSPKPYSVFMDIYAAMGRMHMREFGTTQRQFAAVSAKN 196          
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Match: A0A848G8N9_9RHOO (Thiolase family protein n=2 Tax=Zoogloea TaxID=349 RepID=A0A848G8N9_9RHOO)

HSP 1 Score: 222 bits (566), Expect = 1.850e-68
Identity = 109/163 (66.87%), Postives = 136/163 (83.44%), Query Frame = 1
Query:   22 ALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLEGIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMFSVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGRFHMREFGTTQRQFAAVAAKN 510
            AL DAG  AG ++AAF++N+TQG ++GQ M+RGQ+ALR+ G++GIPV N+ENACASAS+AF LAV  VRAG  ++ LAIGAEKMF+ DKA+MFS+FDGAWDVH  +A++  LL+MG G+ PP GS S  PYS+FMDIYAA GR HMRE+GTTQRQFAAV+AKN
Sbjct:   34 ALVDAGATAGDLEAAFFANSTQGHMDGQDMIRGQIALRAFGIQGIPVVNVENACASASTAFQLAVTQVRAGAADIVLAIGAEKMFSDDKARMFSIFDGAWDVHDSEANRQRLLEMGHGIVPPEGSQSTRPYSVFMDIYAAMGRMHMREYGTTQRQFAAVSAKN 196          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57179.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00164EA87E3.210e-8882.35thiolase family protein n=1 Tax=Ramlibacter sp. GT... [more]
A0A7Y6NQI9_9BURK3.740e-8883.53Thiolase family protein n=5 Tax=Betaproteobacteria... [more]
A0A0R3QAI3_9BILA3.900e-8783.53Thiolase_N domain-containing protein n=1 Tax=Brugi... [more]
A0A562ZSJ9_9BURK9.300e-8378.82Thiolase family protein n=1 Tax=Caenimonas sp. HX-... [more]
A0A369AQT1_9BURK5.470e-7976.47Acetyl-CoA acetyltransferase n=2 Tax=Extensimonas ... [more]
A0A1B3M034_9BURK1.090e-7877.063-Oxoacyl-[acyl-carrier-(ACP)] synthase III family... [more]
A0A4V1ABP4_HYDPS4.970e-7775.29Acetyl-CoA acetyltransferase n=1 Tax=Hydrogenophag... [more]
UPI0005B330E61.960e-7069.41thiolase family protein n=2 Tax=Cupriavidus TaxID=... [more]
A0A0F0F0R1_9BURK1.560e-6968.82Thiolase n=3 Tax=Burkholderiaceae TaxID=119060 Rep... [more]
A0A848G8N9_9RHOO1.850e-6866.87Thiolase family protein n=2 Tax=Zoogloea TaxID=349... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57179contigP-wetherbeei_contig57179:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123504.JQKD01000004_gene5060
PFAMsThiolase_C,Thiolase_N
Model size510
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.16e-89
EggNOG OGsCOG0183@1|root,COG0183@2|Bacteria,1MU8C@1224|Proteobacteria,2VNH1@28216|Betaproteobacteria,4ACWV@80864|Comamonadaceae
DescriptionBelongs to the thiolase family
Cds size510
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.5594692-CDS-P-wetherbeei_contig57179:1..5111683186848.5594692-CDS-P-wetherbeei_contig57179:1..511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57179 2..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57179.1.1prot_P-wetherbeei_contig57179.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57179 2..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57179.1.1

>prot_P-wetherbeei_contig57179.1.1 ID=prot_P-wetherbeei_contig57179.1.1|Name=mRNA_P-wetherbeei_contig57179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
TADAVAAALADAGLAAGVIQAAFYSNTTQGVLEGQTMVRGQVALRSMGLE
GIPVYNLENACASASSAFNLAVQAVRAGEVEVALAIGAEKMFNVDKAKMF
SVFDGAWDVHRVDASKALLLDMGKGVEPPAGSTSKAPYSLFMDIYAAFGR
FHMREFGTTQRQFAAVAAKN
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mRNA from alignment at P-wetherbeei_contig57179:2..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57179.1.1 ID=mRNA_P-wetherbeei_contig57179.1.1|Name=mRNA_P-wetherbeei_contig57179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57179:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGCCGACGCGGTGGCGGCCGCGCTGGCCGACGCCGGCCTGGCGGCCGG CGTCATCCAGGCGGCCTTCTACTCCAACACCACGCAGGGCGTGCTCGAGG GCCAGACCATGGTGCGCGGCCAGGTCGCGCTGCGCAGCATGGGCTTGGAG GGCATCCCGGTCTACAACCTCGAAAACGCCTGCGCCAGCGCGAGCTCGGC ATTCAACCTCGCGGTGCAGGCGGTGCGTGCCGGCGAGGTCGAGGTGGCGC TGGCCATCGGCGCCGAGAAGATGTTCAACGTCGACAAGGCGAAGATGTTC AGCGTCTTCGACGGCGCCTGGGACGTGCACCGGGTCGATGCGAGCAAGGC CTTGCTGCTGGACATGGGGAAAGGCGTCGAGCCGCCCGCCGGCAGCACTT CCAAGGCCCCCTACAGCCTGTTCATGGACATCTACGCCGCGTTCGGGCGC TTCCACATGCGCGAGTTCGGCACCACCCAGCGCCAGTTCGCCGCCGTGGC GGCGAAGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57179:2..511+

>mRNA_P-wetherbeei_contig57179.1.1 ID=mRNA_P-wetherbeei_contig57179.1.1|Name=mRNA_P-wetherbeei_contig57179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57179:2..511+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGCCGACGCGGTGGCGGCCGCGCTGGCCGACGCCGGCCTGGCGGCCGG
CGTCATCCAGGCGGCCTTCTACTCCAACACCACGCAGGGCGTGCTCGAGG
GCCAGACCATGGTGCGCGGCCAGGTCGCGCTGCGCAGCATGGGCTTGGAG
GGCATCCCGGTCTACAACCTCGAAAACGCCTGCGCCAGCGCGAGCTCGGC
ATTCAACCTCGCGGTGCAGGCGGTGCGTGCCGGCGAGGTCGAGGTGGCGC
TGGCCATCGGCGCCGAGAAGATGTTCAACGTCGACAAGGCGAAGATGTTC
AGCGTCTTCGACGGCGCCTGGGACGTGCACCGGGTCGATGCGAGCAAGGC
CTTGCTGCTGGACATGGGGAAAGGCGTCGAGCCGCCCGCCGGCAGCACTT
CCAAGGCCCCCTACAGCCTGTTCATGGACATCTACGCCGCGTTCGGGCGC
TTCCACATGCGCGAGTTCGGCACCACCCAGCGCCAGTTCGCCGCCGTGGC
GGCGAAGAAC
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