mRNA_P-wetherbeei_contig57162.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57162.1.1
Unique NamemRNA_P-wetherbeei_contig57162.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI00198B3DCB (GAF domain-containing protein n=1 Tax=Rhizobacter sp. TaxID=1909292 RepID=UPI00198B3DCB)

HSP 1 Score: 202 bits (513), Expect = 7.420e-64
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = 1
Query:   19 RLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQRA 468
            R+AEL+R++IL+S PERAYDDITR  A+   VPI MVNLLD  RDWFKSC+G+ Q++SP  TSFCEAFF +  DLIVV+DT+ D RF+ HP V G PF+RFYAAARL VRGQTVGTLCAYD+EP+ +   QVEQ++ MAGAV   L QRA
Sbjct:    9 RIAELQRIAILDSSPERAYDDITRLLASTLAVPITMVNLLDEARDWFKSCVGVQQTQSPRVTSFCEAFFHTESDLIVVDDTLADARFSGHPLVVGRPFVRFYAAARLKVRGQTVGTLCAYDMEPRQITSEQVEQMRIMAGAVIEQLNQRA 158          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI001ADEDAA6 (GAF domain-containing protein n=1 Tax=Rhizobacter sp. AJA081-3 TaxID=2753607 RepID=UPI001ADEDAA6)

HSP 1 Score: 202 bits (513), Expect = 8.730e-64
Identity = 102/155 (65.81%), Postives = 121/155 (78.06%), Query Frame = 1
Query:    1 MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQR 465
            MR +  RLAELRR  IL+S  ERAYDDITR  +    VPI MVNLLDAERDWFKSCIG+ Q+ SPA TSFCEAFF ++ DLIVVEDT+LDPRFA +P V+G PFIRFYAAARL VRG+TVGTLCAYDV P+ ++  Q++ L+ +A A   L+ QR
Sbjct:    1 MRLDTSRLAELRRALILDSGAERAYDDITRLLSTSLAVPITMVNLLDAERDWFKSCIGIQQTHSPAVTSFCEAFFHASDDLIVVEDTLLDPRFALNPRVSGRPFIRFYAAARLSVRGETVGTLCAYDVRPRQLSADQMDHLRTLASAAVDLIGQR 155          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI0019C448EE (GAF domain-containing protein n=1 Tax=Bacteriovorax sp. TaxID=2608087 RepID=UPI0019C448EE)

HSP 1 Score: 199 bits (507), Expect = 4.110e-63
Identity = 97/146 (66.44%), Postives = 117/146 (80.14%), Query Frame = 1
Query:   31 LRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQRA 468
            ++R++IL+S PERAYDDITR  A    VPI MVNLLD ERDWFKSC G+ Q++SP  TSFCEAFF +  DLIV +DT+ D RF+AHP V G PFIRFYAAARL+VRGQ+VGTLCAYD+ P+ + P QVEQ++ MAGAV  LL+QRA
Sbjct:    1 MQRIAILDSSPERAYDDITRLLATTLAVPITMVNLLDEERDWFKSCCGVQQTQSPRITSFCEAFFHTESDLIVSKDTLADARFSAHPLVVGRPFIRFYAAARLMVRGQSVGTLCAYDIVPRQITPEQVEQMRTMAGAVVELLSQRA 146          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI0019892AB4 (GAF domain-containing protein n=1 Tax=Burkholderiaceae bacterium TaxID=2030806 RepID=UPI0019892AB4)

HSP 1 Score: 197 bits (500), Expect = 6.820e-62
Identity = 98/155 (63.23%), Postives = 117/155 (75.48%), Query Frame = 1
Query:    1 MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQR 465
            MRKN  RL +L++L+IL++  ER YDD+TR       VPI+MVNLLDAERDWFKSC+G P +ES A TSFCE FF +A DL+VVEDT LDPRF+ HP VAG P IRFYAAARL V GQTVGTLCAYDV+P  V  +Q+  LQA+A +   L+A R
Sbjct:    1 MRKNPARLQQLQQLAILDTAAERVYDDLTRLLQESLAVPISMVNLLDAERDWFKSCVGFPAAESTAETSFCEVFFSTATDLVVVEDTTLDPRFSLHPLVAGPPHIRFYAAARLTVNGQTVGTLCAYDVQPHQVTQAQLADLQALANSAMQLMAAR 155          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI0019C708F5 (GAF domain-containing protein n=1 Tax=Pseudorhodobacter sp. TaxID=1934400 RepID=UPI0019C708F5)

HSP 1 Score: 196 bits (497), Expect = 4.230e-61
Identity = 96/155 (61.94%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    1 MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQR 465
            MR N  RL+EL R  IL++ PERAYDDITR  A    VPI MVNLLDAERDWFKS +G+ Q++SP  TSFCEAFF +++DLIVVEDT+ DP+F AHP V+G PFIRFYAAARL VRG+T+GTLCAYD+ P+ ++  Q+E L  +A A   L+ +R
Sbjct:   17 MRLNTSRLSELGRALILDTSPERAYDDITRLLATTLAVPITMVNLLDAERDWFKSRVGIQQTQSPVVTSFCEAFFNTSRDLIVVEDTLSDPQFKAHPMVSGRPFIRFYAAARLKVRGETIGTLCAYDIHPRPLSIDQLEHLSMLANAAAELIGRR 171          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI000826AFD6 (GAF domain-containing protein n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI000826AFD6)

HSP 1 Score: 189 bits (481), Expect = 3.710e-59
Identity = 93/147 (63.27%), Postives = 110/147 (74.83%), Query Frame = 1
Query:   46 ILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQRAVLTGTL 486
            ILE+ PE AYDD+TRA A G DVPIAMVN+LD  RDWFKS +GLP +ESPA TSFCE    S  D++V EDT  DPRFAAHP V G P IRFYAAARLVV G+T+GTLCAYD+ P+TV P ++ +L+ +  AV ALL +R    GTL
Sbjct:    2 ILETAPETAYDDLTRALAKGLDVPIAMVNILDEHRDWFKSVVGLPFTESPATTSFCEVVLHSGDDVVVAEDTTADPRFAAHPLVVGAPHIRFYAAARLVVDGETIGTLCAYDMRPRTVCPEKLAELKLLGDAVMALLHERQSAPGTL 148          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: A0A519JMU5_9GAMM (GAF domain-containing protein n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A519JMU5_9GAMM)

HSP 1 Score: 187 bits (474), Expect = 5.930e-58
Identity = 95/155 (61.29%), Postives = 113/155 (72.90%), Query Frame = 1
Query:    1 MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQR 465
            MR + +RL  LRRL++L++  E  YDD+TR  A  FDVPI+MVNLLDA+RDWFK+CIG+  SESPA TSFCE FF    DL+V+ DT+ DPRFA HP V G PFIRFYA+ARL   G TVGTLC YDV+PKTV+  QVE L  +  A    LAQR
Sbjct:    1 MRTHPERLEALRRLALLDTATEVVYDDLTRTLAKAFDVPISMVNLLDADRDWFKACIGVSLSESPADTSFCEIFFHCDDDLLVIPDTLADPRFAGHPMVIGVPFIRFYASARLAFDGHTVGTLCIYDVKPKTVSAEQVETLGILRLAAMETLAQR 155          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: A0A519HU46_9BURK (GAF domain-containing protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519HU46_9BURK)

HSP 1 Score: 186 bits (472), Expect = 1.500e-57
Identity = 97/155 (62.58%), Postives = 111/155 (71.61%), Query Frame = 1
Query:    1 MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQR 465
            MR +  RL+ L  L IL + PE  YD +TR  A  FDVPI MVNLLDAERDWFKSC+GLP  ESPA TSFCE FF S +D+IVVEDT  D RF+AHP V G P +RFYAA RLVV G TVGTLC YD+  KTV P+QVE+LQ +     ALL +R
Sbjct:    1 MRIDTKRLSALHDLRILGTAPEADYDALTRDLAQCFDVPIGMVNLLDAERDWFKSCMGLPFDESPANTSFCEVFFSSHEDVIVVEDTTQDQRFSAHPLVLGAPHVRFYAATRLVVEGHTVGTLCVYDIGAKTVTPAQVERLQDLGHLAMALLQRR 155          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI0019A44EC3 (GAF domain-containing protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=UPI0019A44EC3)

HSP 1 Score: 186 bits (473), Expect = 3.550e-56
Identity = 91/155 (58.71%), Postives = 112/155 (72.26%), Query Frame = 1
Query:    1 MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQR 465
            MR N +RL +LR+L+IL+S PE+ YDD+T       DVPI MVNLLDAERDWFK+C+GL  S+SPA   FCE FF +A D+++VEDT  DPRFA HPFVAG PF+RFYAAARL V  QTVGTLC YD +P  ++  Q+  LQ +A A   +L  R
Sbjct:    1 MRANAERLDQLRQLAILDSSPEKIYDDLTTLLVRSLDVPIGMVNLLDAERDWFKACVGLSMSQSPADALFCEVFFNTAADIVIVEDTSKDPRFATHPFVAGAPFVRFYAAARLTVGQQTVGTLCVYDTKPHQLSEGQMLDLQILAEAAIHVLESR 155          
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Match: UPI001668D68E (GAF domain-containing protein n=1 Tax=Polaromonas eurypsychrophila TaxID=1614635 RepID=UPI001668D68E)

HSP 1 Score: 180 bits (456), Expect = 3.230e-55
Identity = 91/155 (58.71%), Postives = 110/155 (70.97%), Query Frame = 1
Query:    1 MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAERDWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVAGEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTALLAQR 465
            MRKN +RL  L+ L++L++  E AYDD+TR  A  FDVPIA+VNLLDA+RDWFK+CIG+   ESP  TSFCE FF    DL+V+ DT  DP FA+HP V G PFIRFYA+ARL   G TVGTLC YDV+PK V+  QVE L+ +  A     AQR
Sbjct:    1 MRKNPERLQALKSLALLDTGAEVAYDDLTRTLAQTFDVPIALVNLLDADRDWFKACIGVSLMESPVETSFCEIFFHCDDDLLVIPDTAADPIFASHPLVVGAPFIRFYASARLAFEGHTVGTLCIYDVQPKQVSAEQVETLKVLRLATMETFAQR 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57162.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00198B3DCB7.420e-6466.00GAF domain-containing protein n=1 Tax=Rhizobacter ... [more]
UPI001ADEDAA68.730e-6465.81GAF domain-containing protein n=1 Tax=Rhizobacter ... [more]
UPI0019C448EE4.110e-6366.44GAF domain-containing protein n=1 Tax=Bacteriovora... [more]
UPI0019892AB46.820e-6263.23GAF domain-containing protein n=1 Tax=Burkholderia... [more]
UPI0019C708F54.230e-6161.94GAF domain-containing protein n=1 Tax=Pseudorhodob... [more]
UPI000826AFD63.710e-5963.27GAF domain-containing protein n=1 Tax=Hydrogenopha... [more]
A0A519JMU5_9GAMM5.930e-5861.29GAF domain-containing protein n=1 Tax=Haliea sp. T... [more]
A0A519HU46_9BURK1.500e-5762.58GAF domain-containing protein n=1 Tax=Rubrivivax s... [more]
UPI0019A44EC33.550e-5658.71GAF domain-containing protein n=1 Tax=Variovorax s... [more]
UPI001668D68E3.230e-5558.71GAF domain-containing protein n=1 Tax=Polaromonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57162contigP-wetherbeei_contig57162:11..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog420662.Mpe_A3496
Preferred namepleD
PFAMsGGDEF,Response_reg
Model size489
Max annot lvl28216|Betaproteobacteria
KEGG koko:K02488
KEGG ReactionR08057
KEGG Pathwayko02020,ko04112,map02020,map04112
KEGG ModuleM00511
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.14e-33
EggNOG OGsCOG2199@1|root,COG2202@1|root,COG2203@1|root,COG2202@2|Bacteria,COG2203@2|Bacteria,COG3706@2|Bacteria,1R7HC@1224|Proteobacteria,2VMMZ@28216|Betaproteobacteria,1KMB6@119065|unclassified Burkholderiales
EC2.7.7.65
Descriptiondiguanylate cyclase
Cds size489
COG categoryT
BRITEko00000,ko00001,ko00002,ko01000,ko02022
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.3301146-CDS-P-wetherbeei_contig57162:10..4991683186848.3301146-CDS-P-wetherbeei_contig57162:10..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57162 11..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57162.1.1prot_P-wetherbeei_contig57162.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57162 11..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57162.1.1

>prot_P-wetherbeei_contig57162.1.1 ID=prot_P-wetherbeei_contig57162.1.1|Name=mRNA_P-wetherbeei_contig57162.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MRKNIDRLAELRRLSILESVPERAYDDITRAFAAGFDVPIAMVNLLDAER
DWFKSCIGLPQSESPAATSFCEAFFGSAQDLIVVEDTMLDPRFAAHPFVA
GEPFIRFYAAARLVVRGQTVGTLCAYDVEPKTVAPSQVEQLQAMAGAVTA
LLAQRAVLTGTL*
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mRNA from alignment at P-wetherbeei_contig57162:11..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57162.1.1 ID=mRNA_P-wetherbeei_contig57162.1.1|Name=mRNA_P-wetherbeei_contig57162.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig57162:11..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGAACATCGACCGCCTCGCTGAACTGCGCCGTCTCTCCATTCT GGAATCGGTCCCCGAACGCGCTTACGACGACATCACGCGGGCTTTTGCGG CCGGCTTCGACGTGCCGATCGCGATGGTCAACCTGCTCGACGCCGAGCGC GACTGGTTCAAGTCGTGCATCGGGCTTCCGCAGTCCGAGTCGCCCGCCGC CACGTCGTTCTGCGAAGCCTTCTTCGGCTCTGCGCAAGACCTGATCGTGG TCGAAGACACGATGCTCGACCCACGCTTCGCGGCACACCCATTCGTGGCC GGCGAGCCCTTCATCCGCTTTTATGCGGCGGCCCGGCTCGTCGTTCGGGG CCAGACGGTCGGAACGCTCTGCGCCTACGACGTGGAGCCGAAGACGGTGG CGCCTTCGCAGGTGGAGCAACTGCAGGCGATGGCCGGGGCGGTGACCGCG CTGCTCGCGCAACGGGCCGTTCTGACCGGCACGCTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57162:11..499+

>mRNA_P-wetherbeei_contig57162.1.1 ID=mRNA_P-wetherbeei_contig57162.1.1|Name=mRNA_P-wetherbeei_contig57162.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig57162:11..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCAAGAACATCGACCGCCTCGCTGAACTGCGCCGTCTCTCCATTCT
GGAATCGGTCCCCGAACGCGCTTACGACGACATCACGCGGGCTTTTGCGG
CCGGCTTCGACGTGCCGATCGCGATGGTCAACCTGCTCGACGCCGAGCGC
GACTGGTTCAAGTCGTGCATCGGGCTTCCGCAGTCCGAGTCGCCCGCCGC
CACGTCGTTCTGCGAAGCCTTCTTCGGCTCTGCGCAAGACCTGATCGTGG
TCGAAGACACGATGCTCGACCCACGCTTCGCGGCACACCCATTCGTGGCC
GGCGAGCCCTTCATCCGCTTTTATGCGGCGGCCCGGCTCGTCGTTCGGGG
CCAGACGGTCGGAACGCTCTGCGCCTACGACGTGGAGCCGAAGACGGTGG
CGCCTTCGCAGGTGGAGCAACTGCAGGCGATGGCCGGGGCGGTGACCGCG
CTGCTCGCGCAACGGGCCGTTCTGACCGGCACGCTCTAG
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