mRNA_P-wetherbeei_contig5715.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5715.2.1
Unique NamemRNA_P-wetherbeei_contig5715.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5715.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5715contigP-wetherbeei_contig5715:1399..3600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1044
Hectar predicted targeting categoryother localisation
Exons5
Cds size903
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5715.2.1prot_P-wetherbeei_contig5715.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5715 1566..3056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.0691576-UTR-P-wetherbeei_contig5715:1398..14371683186848.0691576-UTR-P-wetherbeei_contig5715:1398..1437Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5715 1399..1437 +
1683186848.080197-UTR-P-wetherbeei_contig5715:1564..15651683186848.080197-UTR-P-wetherbeei_contig5715:1564..1565Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5715 1565..1565 +
1683186848.1228108-UTR-P-wetherbeei_contig5715:3056..30701683186848.1228108-UTR-P-wetherbeei_contig5715:3056..3070Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5715 3057..3070 +
1683186848.1311939-UTR-P-wetherbeei_contig5715:3513..36001683186848.1311939-UTR-P-wetherbeei_contig5715:3513..3600Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5715 3514..3600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.0903776-CDS-P-wetherbeei_contig5715:1565..22551683186848.0903776-CDS-P-wetherbeei_contig5715:1565..2255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5715 1566..2255 +
1683186848.1008356-CDS-P-wetherbeei_contig5715:2532..26481683186848.1008356-CDS-P-wetherbeei_contig5715:2532..2648Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5715 2533..2648 +
1683186848.111298-CDS-P-wetherbeei_contig5715:2959..30561683186848.111298-CDS-P-wetherbeei_contig5715:2959..3056Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5715 2960..3056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5715.2.1

>prot_P-wetherbeei_contig5715.2.1 ID=prot_P-wetherbeei_contig5715.2.1|Name=mRNA_P-wetherbeei_contig5715.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=301bp
MSVISIDSDPEVLDLMSSDDDSDSKGEMEVVDNSKTTSASAVNNNPAMAA
PPQAAATDAVVPASDTVVAAVMTATTMSGATSFLPAAAGQTTPPSVSQAP
TASAAAAAAVGFAAAAAANADMNVDGTAVSVAAGATTASPAAAPAAAPFP
EASVTPENAGPDLRLLLARSTQRQLCVTYGRAMHGITVDGQAKMVPQDWS
PILYELTRADGTQLVYTLPPNRKAYPDFFPKPTGNCRQLAARRCVKRHGT
AQSGPRTAAAWRRGMPSSRWTTSSPSCCGAQAWRSAATPSRRTPWLWPTK
*
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mRNA from alignment at P-wetherbeei_contig5715:1399..3600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5715.2.1 ID=mRNA_P-wetherbeei_contig5715.2.1|Name=mRNA_P-wetherbeei_contig5715.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2202bp|location=Sequence derived from alignment at P-wetherbeei_contig5715:1399..3600+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGGCATTGCTCACCTTTCGAGCAGCGGGACAGGAAGGTGGAAAACTT
ATGTTGCGGAAAGAGATATTGCTGTATATATGATTCCTTCCTTCAGTGCG
CCAGTGCTTAAACCCGCTTAAAACAATCGTTTTCCTCCTTTCCTTTTGCT
TCCTTGTTGCAGTCAGGATGAGCGTAATAAGCATCGACTCGGACCCAGAA
GTGCTAGACTTGATGAGCAGTGATGATGACTCGGATTCAAAGGGTGAGAT
GGAAGTGGTCGACAACTCAAAAACCACATCTGCTTCTGCTGTCAACAACA
ACCCTGCGATGGCGGCCCCACCTCAGGCGGCGGCGACGGATGCGGTAGTT
CCAGCATCAGATACAGTCGTGGCTGCTGTCATGACTGCGACGACGATGTC
GGGGGCCACATCATTTTTGCCCGCAGCCGCGGGCCAAACGACACCGCCAA
GTGTTTCACAAGCTCCGACGGCCTCTGCCGCCGCGGCTGCTGCCGTTGGC
TTCGCCGCTGCAGCCGCCGCCAACGCCGATATGAATGTCGACGGTACCGC
CGTCTCTGTCGCTGCTGGTGCCACCACCGCCTCTCCTGCCGCCGCTCCGG
CCGCCGCGCCGTTCCCCGAGGCGAGCGTCACTCCCGAGAACGCGGGGCCG
GACCTGCGCCTGCTCCTGGCGCGCTCGACGCAACGGCAGCTCTGCGTCAC
CTACGGGCGGGCGATGCATGGCATCACCGTGGACGGGCAGGCGAAAATGG
TACCTCAGGACTGGTCGCCGATTCTGTACGAGCTTACGCGGGCGGACGGC
ACCCAGCTGGTCTACACGCTGCCGCCGAACCGGAAGGCGTATCCGGACTT
CTTCCCGGTGAGAGCGAGGGAACAGAGAGGGAGAGGCGGACGGAAGGAGA
ATGGCTCAACGAAAGAAGCGGAGAGCGGGGGTTCATACGTCGCTACGGTC
TGACTGTTATACGTGCCCAAAAGGCCGCGCCCGAGTCGTCCGTCGCCGTG
GCAGTGTTCATTGATTTTACGATGAAACGAAGGGATTAGAGTCGCCGTGA
AGTGTCTGCCCCTTTTTAGTAGATCATCTCCGACGCTGCAAGCTCTCCGT
CGCTCCTTTTGGACTGTATCCATTTCTCCGTAAGAAACCCACGGGAAACT
GCAGGCAGTTGGCTGCTCGCCGGTGTGTCAAGCGGCACGGGACGGCGCAA
TCTGGGCCACGCACTGCGGCTGCCTGGAGGCGGGGGATGCCATCCTCGCG
GTGAGTCCCGCTGCGGCTGTTGCGGCGATGACGCGACGCACGCGATGGGC
TGCGACCGCTTTTTGATCGCTGCCTGCCACTGCTGCAGCGGAACGGATTG
AAACGGGTGGCTCCTGGGCAACACTGCGGTTCTTTCTTTCTTTATCCTTT
TGTCCCTTCGATCTGCCGGAAGAGGGGGTGCTTCCTTCCTTGATCCGGCG
CGCCTTCCTTGATCCGGTGTTCTTTTTTCAGTCTTGCTTTCGCCGGGGAA
AACAGGTTCTTTCTTTTCCTATATCAGAGACTGTACGTTGGGTTTAAAAC
CTTGCTGGCAGGTGGACCACCTCTTCCCCGTCGTGCTGCGGGGCGCAAGC
TTGGAGGAGTGCTGCGACGCCATCAAGGCGGACTCCGTGGCTTTGGCCAA
CCAAATAGCCTTCCGCCACACGGTGATACAGCTGGAGGCCTGGCTTCGTG
TTTGCGTTGGGTATTGTCCCAGCGACCGCCTTATTAGAGCCAAGAATCCG
GAAAGGATCGGCCTGCTTTTTCCTGGAGTGCGGGAGTTCTGTGGAGCTAA
GTCTCGGCGACTGTGTTTGGCGAGCAGGTCGCCCTGGTTTTGCCCTGTTT
TACCTCTCGTGCATTGCGCGCGTTTTTCTCAGAACAACGGCGCGGTAGGC
CGCCACAAGCAGCGTGCGGGTGCAGTAACAATCTGCGACGGCTGCCACTG
TGGCGGTGCGGGTGGCGGCCGCAGCAGCAGGCAGCAGCAGCTACCCCAAA
ACCCGACGACTGCTTGAATTCTTCTACACCCCGGCCTCTAATTTTTCATT
TTCTTTAATCGCGCGCCGTCCCTTCTCGTTTCGTCTCGTCCTACCCCCGC
TGACCTGGGCTCCAGCAGACGGCATCGAGTCTGCTCGCAGAGGAAGAGGT
GATGCGGGAGCGCCTTGCGTTCGAAGCCAGGCAGACAGCGGCGGTGGTGT
CG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5715:1399..3600+

>mRNA_P-wetherbeei_contig5715.2.1 ID=mRNA_P-wetherbeei_contig5715.2.1|Name=mRNA_P-wetherbeei_contig5715.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=903bp|location=Sequence derived from alignment at P-wetherbeei_contig5715:1399..3600+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGTAATAAGCATCGACTCGGACCCAGAAGTGCTAGACTTGATGAG
CAGTGATGATGACTCGGATTCAAAGGGTGAGATGGAAGTGGTCGACAACT
CAAAAACCACATCTGCTTCTGCTGTCAACAACAACCCTGCGATGGCGGCC
CCACCTCAGGCGGCGGCGACGGATGCGGTAGTTCCAGCATCAGATACAGT
CGTGGCTGCTGTCATGACTGCGACGACGATGTCGGGGGCCACATCATTTT
TGCCCGCAGCCGCGGGCCAAACGACACCGCCAAGTGTTTCACAAGCTCCG
ACGGCCTCTGCCGCCGCGGCTGCTGCCGTTGGCTTCGCCGCTGCAGCCGC
CGCCAACGCCGATATGAATGTCGACGGTACCGCCGTCTCTGTCGCTGCTG
GTGCCACCACCGCCTCTCCTGCCGCCGCTCCGGCCGCCGCGCCGTTCCCC
GAGGCGAGCGTCACTCCCGAGAACGCGGGGCCGGACCTGCGCCTGCTCCT
GGCGCGCTCGACGCAACGGCAGCTCTGCGTCACCTACGGGCGGGCGATGC
ATGGCATCACCGTGGACGGGCAGGCGAAAATGGTACCTCAGGACTGGTCG
CCGATTCTGTACGAGCTTACGCGGGCGGACGGCACCCAGCTGGTCTACAC
GCTGCCGCCGAACCGGAAGGCGTATCCGGACTTCTTCCCGAAACCCACGG
GAAACTGCAGGCAGTTGGCTGCTCGCCGGTGTGTCAAGCGGCACGGGACG
GCGCAATCTGGGCCACGCACTGCGGCTGCCTGGAGGCGGGGGATGCCATC
CTCGCGGTGGACCACCTCTTCCCCGTCGTGCTGCGGGGCGCAAGCTTGGA
GGAGTGCTGCGACGCCATCAAGGCGGACTCCGTGGCTTTGGCCAACCAAA
TAG
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