mRNA_P-wetherbeei_contig57146.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57146.1.1
Unique NamemRNA_P-wetherbeei_contig57146.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: UPI001C3C6DC7 (hydroxysqualene dehydroxylase HpnE n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C6DC7)

HSP 1 Score: 251 bits (641), Expect = 2.370e-79
Identity = 134/178 (75.28%), Postives = 142/178 (79.78%), Query Frame = 1
Query:    1 RFWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGVAEAGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVLAFSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAMG-DPSPD------HHLAVSISGAR 513
            RFWDLIVLPTCNDRSDRVSAALAAFV R GFL S RGSA+GWSRVGLTRLVDPAAR +LE RGGRV+ G GVA   P  V L  GER+ AD VV+ALPPGR  EVAP ALP  P L  SPIVNVHLWYDRPVMDEPFTAV+DSP QWIFNR+AMG +P P       HHLAVSISGAR
Sbjct:  171 RFWDLIVLPTCNDRSDRVSAALAAFVLRRGFLESPRGSAVGWSRVGLTRLVDPAARRWLEARGGRVLDGRGVASVEPGVVTLGDGERLAADGVVVALPPGRAREVAPGALPDDPGLGTSPIVNVHLWYDRPVMDEPFTAVVDSPAQWIFNRTAMGAEPEPGRAPDGTHHLAVSISGAR 348          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: UPI001C3DCA6D (hydroxysqualene dehydroxylase HpnE n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3DCA6D)

HSP 1 Score: 244 bits (622), Expect = 1.450e-76
Identity = 129/173 (74.57%), Postives = 138/173 (79.77%), Query Frame = 1
Query:    1 RFWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGVAEAGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVLAFSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAMGDPSPD--HHLAVSISGAR 513
            RFWDLIVLPTCNDRSDRVSAALAAFVF+ G L S RGSAIGWSRVGLTRLVDPAARAFLE RGGRV++G  V  A   GV L  GER+ AD VVLALPP R    AP ALP  P L  SPIVNVHLWYDRPVMDEPFTAV+D P QWIFNRSAMG  + +  HH+AVS+SGAR
Sbjct:  170 RFWDLIVLPTCNDRSDRVSAALAAFVFQRGVLRSTRGSAIGWSRVGLTRLVDPAARAFLEARGGRVLTGRAVERADGDGVALRDGERLPADGVVLALPPERARAAAPEALPADPALGASPIVNVHLWYDRPVMDEPFTAVVDGPAQWIFNRSAMGAVAREGEHHVAVSMSGAR 342          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A7C2UC47_9CHLR (Phytoene dehydrogenase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2UC47_9CHLR)

HSP 1 Score: 150 bits (379), Expect = 1.890e-40
Identity = 87/181 (48.07%), Postives = 114/181 (62.98%), Query Frame = 1
Query:    4 FWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRV-----VSGVGVAEAGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVL------AFSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAM-GDPSPDHHLAVSISGA 510
            FWDLIV PT N+  D VS  LAA VF+ GFL     +AIG+SRVGL+ L++ A R++L +RGG V     V G+ +A+   AGV L  GE + ADAVV  +PP  + E+ PA+L   P         FSPIVNVHLWY+RPVM   F A ++S +QW+FN++ M   P P  HL +S+S A
Sbjct:  123 FWDLIVRPTLNEELDAVSTDLAAMVFQVGFLRDAEAAAIGYSRVGLSTLLEEAVRSYLADRGGEVRTAVAVRGLTLADGRAAGVVLEGGETLTADAVVSTVPPDALLELLPASLAGDPFFRRLGEFTFSPIVNVHLWYERPVMRHEFAAFLNSSLQWVFNKTQMWAQPGPLQHLDISLSAA 303          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A2H5YNI5_9BACT (15-cis-phytoene desaturase n=1 Tax=bacterium HR25 TaxID=2035420 RepID=A0A2H5YNI5_9BACT)

HSP 1 Score: 150 bits (378), Expect = 4.710e-40
Identity = 87/181 (48.07%), Postives = 115/181 (63.54%), Query Frame = 1
Query:    4 FWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGVAE-----AGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVLAF------SPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAM-GDPSPDHHLAVSISGA 510
            FW++IV PT N+ S + SA LAA VF+EG L  +   AIG++RVGL+ L++ AAR +LE RG  V  G GV E        AGV L +GE ++ D VV+ALPPG +  + P AL   P  A       SPIVNVHLW+DRPVM  PF A ++SP+QW FN++ + G P  + HL +S+S A
Sbjct:  169 FWEVIVRPTLNEESSQASADLAAMVFQEGLLRDRDAGAIGYARVGLSTLLEDAARRYLEARGATVRLGCGVRELLLRDGVMAGVALENGEALQGDWVVVALPPGNLLSLLPPALREEPFFARFGRFQGSPIVNVHLWFDRPVMSIPFAAFLNSPLQWAFNKTRLWGTPGEEQHLDISLSAA 349          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A535D8Q0_9CHLR (FAD-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535D8Q0_9CHLR)

HSP 1 Score: 149 bits (375), Expect = 1.250e-39
Identity = 87/179 (48.60%), Postives = 112/179 (62.57%), Query Frame = 1
Query:    7 WDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGVA----EAGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVLA------FSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAM-GDPSPDHHLAVSISGA 510
            W+LIV PT ND   RVSA LA  VF+EGFL S+ G+ +GW+RVGLT L+  AAR ++EERGG V +GV V     E G     L  GE + ADA VLA+PP  V  + PA +   P  A       SPIVNVH+WYDRPV    F A +++PVQW FN++ + G   P  ++ +S+SGA
Sbjct:  171 WNLIVQPTLNDEMSRVSADLALMVFQEGFLSSRDGANVGWARVGLTSLLGEAARRYIEERGGEVRTGVPVTGIELEDGRVSRVLMDGEALTADAFVLAVPPPAVLPLLPAPVASDPFFARIASIQVSPIVNVHMWYDRPVWQGKFAAFLNTPVQWAFNKTRLWGLEGPGQYIDISLSGA 349          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A2H5YJU5_9BACT (15-cis-phytoene desaturase n=3 Tax=Bacteria TaxID=2 RepID=A0A2H5YJU5_9BACT)

HSP 1 Score: 134 bits (338), Expect = 3.280e-34
Identity = 83/181 (45.86%), Postives = 106/181 (58.56%), Query Frame = 1
Query:    4 FWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGV-----AEAGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVLA------FSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAM-GDPSPDHHLAVSISGA 510
            FWDLIV PT N+  D  S  LAA VF+ GFL   R SAIG+SRVGL+ L++ A + +L  RGG+V +G  V     A    AGV L  GE + ADAV+ A+PP  +  + P  L   P         FSPIVNVHLWY+RPV    F A ++S +QW+FN+S M G       L +S+S A
Sbjct:  169 FWDLIVRPTLNEELDNASTDLAAMVFQAGFLHDARASAIGYSRVGLSTLLEGAVKDYLAARGGQVRTGTAVRRVIAAGGRAAGVALEGGETLPADAVIAAVPPDALLPLLPDGLADEPFFRRFRQFQFSPIVNVHLWYERPVAGILFAAFLNSSLQWLFNKSRMWGQTGQVQQLDISLSAA 349          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A7C2U2K8_9CHLR (FAD-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2U2K8_9CHLR)

HSP 1 Score: 132 bits (331), Expect = 3.310e-33
Identity = 80/181 (44.20%), Postives = 106/181 (58.56%), Query Frame = 1
Query:    4 FWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGV-----AEAGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVLA------FSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAM-GDPSPDHHLAVSISGA 510
            FWDLIV PT N+  D VS  LAA VF+ GFL     +AIG+SRVGL+ L++ A R +L  RGG V +GV V     ++    GV L  GE + A AVV A+PP  +  + P  +   P         +SPIVNVHLWY+RPV    F A ++S +QW+FN++ M G   P   L +S+S A
Sbjct:  169 FWDLIVRPTLNEELDAVSTDLAAMVFQVGFLRDAEAAAIGYSRVGLSTLMEGAVREYLAARGGEVRTGVAVRGLALSDGRATGVVLDGGEVVPAAAVVAAVPPDALLSLLPGEVAREPFFRRLGEFRYSPIVNVHLWYERPVTGLEFAAFLNSSLQWVFNKTKMWGQTGPVQQLDISLSAA 349          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A7C5RSH7_9CHLR (FAD-dependent oxidoreductase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C5RSH7_9CHLR)

HSP 1 Score: 128 bits (322), Expect = 4.810e-32
Identity = 72/181 (39.78%), Postives = 113/181 (62.43%), Query Frame = 1
Query:    4 FWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVG-----VAEAGPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPVLA------FSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAM-GDPSPDHHLAVSISGA 510
            FW+L+++PT N+ + +VS  +AA VF+ GFL S+  SAIG+ +V L+++ + AAR ++E RGG +++G G     + +    GV L   + +EADAV+ A+PP  +  + P+     P  A      +SPIVNVHLWY+  VM E   + ++S +QW+FN+S M G  +P  HL +S+S A
Sbjct:  168 FWNLVLIPTLNEEATKVSTDMAAMVFQTGFLASREASAIGYLQVPLSQVAE-AARTYVEARGGHIIAGRGTRSLWIQDGHVKGVALDDHQTLEADAVICAVPPRELSSLLPSTWQDHPFFARLRRIQYSPIVNVHLWYEGQVMGEEMVSFLNSSLQWVFNKSRMWGLRAPHQHLDISLSAA 347          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A2W1AVC6_9CHLR (Protoporphyrinogen oxidase/Dehydrogenase (Flavoprotein) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AVC6_9CHLR)

HSP 1 Score: 128 bits (322), Expect = 6.000e-32
Identity = 87/189 (46.03%), Postives = 107/189 (56.61%), Query Frame = 1
Query:    1 RFWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGV----------AEAGPAGVELTSGERIEADAVVLALPPGRVGEVAPA------ALPVAPVLAFSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAMG---DPSPDHHLAVSISGA 510
            RFWDLIVLPTCND S+ VSAA AA+VFR G      G+ IG +R+GL+ +   AARA  E  GG  + G  V          A     GVEL  GE I+ADAVVLALPP +   + PA       L       FSPIVNVHL  DRP++ + F AV+D  +Q++FNR  +    DP     L VS+S A
Sbjct:  186 RFWDLIVLPTCNDLSNDVSAAQAAYVFRVGLFTDAHGADIGVARIGLSHIA-AAARAHFEAAGGASILGKRVRRIVARDDHPASVEGGGVEL-GGETIDADAVVLALPPDQARALLPADWRTRDGLNALDAFTFSPIVNVHLRLDRPILRDDFVAVLDPDLQYVFNRDRITGHRDPDGGQWLTVSLSAA 372          
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Match: A0A6L7MJE0_9CHLR (FAD-dependent oxidoreductase n=2 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6L7MJE0_9CHLR)

HSP 1 Score: 128 bits (321), Expect = 7.130e-32
Identity = 77/181 (42.54%), Postives = 108/181 (59.67%), Query Frame = 1
Query:    7 WDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRLVDPAARAFLEERGGRVVSGVGVAEA-----GPAGVELTSGERIEADAVVLALPPGRVGEVAPAALPVAPV------LAFSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFNRSAM-GDP-SPDHHLAVSISGA 510
            W+LI+LPT ND    V+A +A  V ++G L   R +AIG++RVGL  + D   R F+E+ GG V+ G  V           G +L+ G  + ADA V ALP G + ++ P  L   P       L  +PIVNVHLWYDRPVM + F A ++SP+QW+FNRS + G+P S   ++ +S+SGA
Sbjct:  175 WNLIILPTLNDDVRSVNADMALMVVQQGLLKKPRDAAIGYARVGLGSIADARGRRFIEDSGGSVIQGKTVRSLLFDGDVVGGAQLSDGTTLLADAYVSALPYGTLLDLLPPKLATDPFFEQIAGLTSAPIVNVHLWYDRPVMKDAFIAFLESPIQWVFNRSLIQGNPDSSGQYVCISLSGA 355          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57146.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C6DC72.370e-7975.28hydroxysqualene dehydroxylase HpnE n=1 Tax=Miltonc... [more]
UPI001C3DCA6D1.450e-7674.57hydroxysqualene dehydroxylase HpnE n=1 Tax=Miltonc... [more]
A0A7C2UC47_9CHLR1.890e-4048.07Phytoene dehydrogenase (Fragment) n=1 Tax=Chlorofl... [more]
A0A2H5YNI5_9BACT4.710e-4048.0715-cis-phytoene desaturase n=1 Tax=bacterium HR25 ... [more]
A0A535D8Q0_9CHLR1.250e-3948.60FAD-dependent oxidoreductase n=1 Tax=Chloroflexi b... [more]
A0A2H5YJU5_9BACT3.280e-3445.8615-cis-phytoene desaturase n=3 Tax=Bacteria TaxID=... [more]
A0A7C2U2K8_9CHLR3.310e-3344.20FAD-dependent oxidoreductase n=1 Tax=Chloroflexi b... [more]
A0A7C5RSH7_9CHLR4.810e-3239.78FAD-dependent oxidoreductase n=1 Tax=Chloroflexi b... [more]
A0A2W1AVC6_9CHLR6.000e-3246.03Protoporphyrinogen oxidase/Dehydrogenase (Flavopro... [more]
A0A6L7MJE0_9CHLR7.130e-3242.54FAD-dependent oxidoreductase n=2 Tax=Dehalococcoid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57146contigP-wetherbeei_contig57146:1..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1120948.KB903246_gene3315
Preferred namehopC
PFAMsAmino_oxidase
Model size513
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.29e-29
EggNOG OGsCOG1232@1|root,COG1232@2|Bacteria,2I2Z5@201174|Actinobacteria,4E1XZ@85010|Pseudonocardiales
DescriptionTIGRFAM squalene-associated FAD-dependent desaturase
Cds size513
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186848.003811-CDS-P-wetherbeei_contig57146:0..5131683186848.003811-CDS-P-wetherbeei_contig57146:0..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57146 1..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57146.1.1prot_P-wetherbeei_contig57146.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57146 1..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57146.1.1

>prot_P-wetherbeei_contig57146.1.1 ID=prot_P-wetherbeei_contig57146.1.1|Name=mRNA_P-wetherbeei_contig57146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
RFWDLIVLPTCNDRSDRVSAALAAFVFREGFLGSQRGSAIGWSRVGLTRL
VDPAARAFLEERGGRVVSGVGVAEAGPAGVELTSGERIEADAVVLALPPG
RVGEVAPAALPVAPVLAFSPIVNVHLWYDRPVMDEPFTAVIDSPVQWIFN
RSAMGDPSPDHHLAVSISGAR
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mRNA from alignment at P-wetherbeei_contig57146:1..513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57146.1.1 ID=mRNA_P-wetherbeei_contig57146.1.1|Name=mRNA_P-wetherbeei_contig57146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig57146:1..513- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCTGGGACCTCATCGTGCTGCCCACCTGCAACGACCGCAGCGACCG GGTCTCGGCCGCTCTCGCCGCCTTCGTCTTTCGCGAGGGCTTTCTGGGCT CGCAGCGGGGCTCGGCGATCGGCTGGTCGCGGGTCGGCCTCACGCGGCTG GTGGACCCGGCCGCCCGAGCCTTCCTGGAGGAGCGCGGCGGACGCGTCGT GTCGGGGGTCGGGGTGGCGGAGGCCGGCCCGGCCGGGGTCGAGCTGACCA GCGGCGAGCGCATCGAGGCCGACGCCGTGGTGCTCGCGCTGCCTCCCGGG CGGGTGGGCGAGGTGGCGCCCGCCGCCCTGCCCGTGGCCCCTGTGCTCGC GTTCTCGCCCATCGTCAACGTCCACCTCTGGTACGACCGGCCGGTGATGG ACGAGCCCTTCACGGCCGTCATCGACAGCCCGGTGCAGTGGATCTTCAAC CGATCGGCAATGGGTGATCCCTCGCCCGACCACCACCTGGCCGTCTCCAT CTCGGGCGCCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57146:1..513-

>mRNA_P-wetherbeei_contig57146.1.1 ID=mRNA_P-wetherbeei_contig57146.1.1|Name=mRNA_P-wetherbeei_contig57146.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig57146:1..513- (Phaeothamnion wetherbeei SAG_119_79)
CGCTTCTGGGACCTCATCGTGCTGCCCACCTGCAACGACCGCAGCGACCG
GGTCTCGGCCGCTCTCGCCGCCTTCGTCTTTCGCGAGGGCTTTCTGGGCT
CGCAGCGGGGCTCGGCGATCGGCTGGTCGCGGGTCGGCCTCACGCGGCTG
GTGGACCCGGCCGCCCGAGCCTTCCTGGAGGAGCGCGGCGGACGCGTCGT
GTCGGGGGTCGGGGTGGCGGAGGCCGGCCCGGCCGGGGTCGAGCTGACCA
GCGGCGAGCGCATCGAGGCCGACGCCGTGGTGCTCGCGCTGCCTCCCGGG
CGGGTGGGCGAGGTGGCGCCCGCCGCCCTGCCCGTGGCCCCTGTGCTCGC
GTTCTCGCCCATCGTCAACGTCCACCTCTGGTACGACCGGCCGGTGATGG
ACGAGCCCTTCACGGCCGTCATCGACAGCCCGGTGCAGTGGATCTTCAAC
CGATCGGCAATGGGTGATCCCTCGCCCGACCACCACCTGGCCGTCTCCAT
CTCGGGCGCCCGG
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