mRNA_P-wetherbeei_contig5714.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5714.2.1
Unique NamemRNA_P-wetherbeei_contig5714.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: A0A835YYB4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.880e-29
Identity = 79/189 (41.80%), Postives = 98/189 (51.85%), Query Frame = 1
Query:    1 WPGYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADL-----VSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKIDDGGG--------------------FGVTPAVLSTGGVLLTLARLQEVWGAEDFASSLLSAWAT--APDL---------------MWSEYTLYRLTLRHLRMFYRLHA 441
            W GYA+QML+KLLAA+++ T+FY+TLDADVV    G A+A L     + RG    A+ +EPRAVH  WWA       L                            FGVTPAVLST G LLTL RL+  +G + +A++LL AW T  AP                 +WSEYTLYRL L H  +F  LH 
Sbjct:   63 WSGYAVQMLMKLLAAQLVPTDFYLTLDADVVLTFGGGASAALDALLPLPRG----AYANEPRAVHAAWWAASQRVLQLPSSSXXXXXXXXXXXXXXXXXXXXXXXXFGVTPAVLSTPGALLTLGRLKAQYGEQTYAAALLDAWTTGTAPAAXXXXXXXXXXXXXAWLWSEYTLYRLALDHFGLFEALHV 247          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: D7FYE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYE1_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.290e-28
Identity = 62/129 (48.06%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   55 DTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKIDDGGGFGVTPAVLSTGGVLLTLARLQEVWGAEDFASSLLSAWATAPDLMWSEYTLYRLTLRHLRMFYRLHA 441
             T FY+TLDADV+C +      DL+ +G+G   +V E R VHP WW+  A T  + +   GGGFGVTPAVLST G  L L RL+ V G E F  ++L  W   P   WSEYTLYR  L H  +F   HA
Sbjct:   27 QTPFYLTLDADVLCSKDQLTEEDLLPQGKGN--YVPEGRNVHPAWWSEAAKTLGVEENPIGGGFGVTPAVLSTRGAALALERLRAVHGKEGFLRTVLDGWWVEPGRWWSEYTLYRTALDHWGVFDTFHA 153          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: A0A8J2SU67_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU67_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.980e-25
Identity = 65/148 (43.92%), Postives = 88/148 (59.46%), Query Frame = 1
Query:    1 WPGYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKID-DGGGFGVTPAVLSTGGVLLTLARLQEVWGAEDFASSLLSAWATAPDLMWSEYTLYRLTLRHLRMFYRLHA 441
            W  YALQM +KLL A+ + T +YVT+DAD++ V  G   A L   G G+  FV+E R VHPHWW G A    L + D     FGVTPAVLST G ++T + +++V+  +D+    L +W+      WSEYTLYRL L    +F  +H 
Sbjct:  252 WHTYALQMAVKLLVAQRVTTNYYVTVDADILLV--GTFDAALFFPG-GRGTFVEEHRGVHPHWWRGSADILGLTEDDYPNAAFGVTPAVLSTIGSVITTSLIRDVFEDDDWQQRWLGSWSNGT--WWSEYTLYRLALDIRGLFDNIHV 394          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: A0A482SN02_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SN02_9ARCH)

HSP 1 Score: 76.6 bits (187), Expect = 1.440e-13
Identity = 52/154 (33.77%), Postives = 75/154 (48.70%), Query Frame = 1
Query:   10 YALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKIDDGGGFGVTPAVLSTGGVLLTLARLQEVW-----------GAEDFASSL--------LSAWATAPDLMWSEYTLYRLTLRH 414
            Y LQM +KLLAA+ + T +Y+ LDADV  +R     + L++    +A +  EP +VH  WW G  +   L  +D    FGVTPA+LST G +LT   ++              G    A+          L ++      +W+EYTLYR  L H
Sbjct:  215 YGLQMAIKLLAAQHVHTSYYLVLDADVFLLRP-FELSQLIAAEPPRAVYRREPWSVHSLWWQGSRALLGLGGVDTRASFGVTPALLSTWGSMLTTQHIKAALCSRASSNQCAIGDSSCAAQCSALYEEMWLDSFGRVGGTIWTEYTLYRTVLDH 367          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: A0A819S7U7_9BILA (Hypothetical protein n=7 Tax=Rotaria TaxID=231623 RepID=A0A819S7U7_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 4.910e-12
Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 1
Query:    7 GYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEG-----------QAAFVDEPRAVHPHWWAGGASTYNLAKIDDGG---------GFGVTPAVLSTGGVLLTLARLQEVWGAEDFASSLLS--AWATAPDLMWSEYTLYRLTLR 411
             Y LQM+ KL+ A+VI TE+Y+ LD+D + +     T  L  +              QA +  E R+ H  WW     +  L +I+              GVTPA+LS    L+TL RLQ+++G   F + L +   W T    MW+EYTLY LT R
Sbjct:  211 SYRLQMMFKLVIAQVIKTEYYMILDSDCIALSPIHVTQLLWQQNMSSSKTSHSIPSHQALYQLEERSDHAEWWP---ESEQLLQIEPNTCVTNNPSTKSIGVTPAILSKSIALMTLCRLQKLYGDRSFLNILANWALWRTPFGRMWTEYTLYYLTAR 364          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: A0A7S0MTN8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MTN8_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.560e-10
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    7 GYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKID------DGGGFGVTPAVLSTGGVLLTLARLQEVWGAEDFASSLLSAWATAPDLMWSEYTL 393
            GY LQML+KL AA +++T FYVTLD+DV+  RR    +DLV  G G   +  +P   H +WW   AS   L   D      +GG   VTPAVLST      LA ++ +     + ++L        D  W+EYTL
Sbjct:   39 GYRLQMLVKLAAAILVETPFYVTLDSDVLLTRR-TRFSDLVVDGRG--VYQHDPGNQHGNWWD--ASKQVLRTTDGCPRQLEGG---VTPAVLSTQVSRELLAHIERLHKGRAWDAALFEQLEGGAD--WTEYTL 163          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: A0A8J5XPN4_DIALT (Uncharacterized protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPN4_DIALT)

HSP 1 Score: 66.6 bits (161), Expect = 4.780e-10
Identity = 62/154 (40.26%), Postives = 73/154 (47.40%), Query Frame = 1
Query:    7 GYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEP----RAVHPHWWAG--------------GASTYNLAKIDDGGGFGVTPAVLSTGGVLLTLARLQEV-----WGAEDFASSLLSAWATAPDLM-WSEYTLY 396
             Y LQMLLKL AA V+ TEFYVTLD DV+ + +  A A LVS  +G+A    E     R     WWA               G       +   G   GVTPAVLS    L T+AR++E      WGA  +   L      APD   WSEYTLY
Sbjct:  196 AYRLQMLLKLAAAAVVSTEFYVTLDQDVL-LAQPLAFASLVSP-DGKALVQGEAWPYARRHDISWWAAADRALRAGGCVLHAGTEGAGWERALRGATIGVTPAVLSRSIALRTMARIEEANGGRWWGAA-WDEILFRLLLQAPDQYNWSEYTLY 346          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: UPI001ADD5485 (DUF6492 family protein n=1 Tax=Endozoicomonas sp. G2_1 TaxID=2821091 RepID=UPI001ADD5485)

HSP 1 Score: 65.5 bits (158), Expect = 8.730e-10
Identity = 47/156 (30.13%), Postives = 77/156 (49.36%), Query Frame = 1
Query:    7 GYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKI--DDGGGFGVTPAVLSTGGVLLTLARLQEVWGAE--DFASSLLSA-----WATAPDLM--WSEYTLYRLTLRHLRMFYRLHA 441
            G+  Q L+K+ AA+ +  +FY+T DADV+C++       ++   +G+A    E R +HP WW   A    ++    + G G  +TP++L+    L  ++ L E+WG    D   SL +A     W+    L   W+EY+LY +      MF   H 
Sbjct:   86 GWRKQQLVKIAAAQYLKEDFYLTFDADVICLKPLTMDKLII---DGKALLQYESRELHPKWWKSSARMLKMSPDVGEAGVGMHITPSILAKNICLKLISELTELWGKHWVDEICSLHNAKDPRNWSIFRYLRSRWTEYSLYYMCAHKFGMFDNYHV 238          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: F0YHF8_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHF8_AURAN)

HSP 1 Score: 63.9 bits (154), Expect = 3.950e-9
Identity = 57/147 (38.78%), Postives = 72/147 (48.98%), Query Frame = 1
Query:    1 WPGYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKIDDGGGFGVTPAVLSTGGVLLTLARLQEVWGAEDFASSLLSAWATAPDLMWSEYTLYRLTLRHLRMFYRLHA 441
            W  YALQM LKLL AR + TE Y+TLDADVV V       DL S   G A +   P A+    +    +T NL +I            +S G  L   A ++  +   D+    L +W T   L WSEYTLYRL L    +F +LHA
Sbjct:  190 WHNYALQMALKLLVARHVTTEHYITLDADVVVV------GDL-SVHSGTAEY---PPALVARVFR---TTRNLRRI------------VSHGSALTATASVKNRFEKIDWQEVWLRSWETG--LWWSEYTLYRLALDRHGLFKKLHA 309          
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Match: UPI001C091B37 (DUF6492 family protein n=1 Tax=Aliiglaciecola lipolytica TaxID=477689 RepID=UPI001C091B37)

HSP 1 Score: 63.5 bits (153), Expect = 4.190e-9
Identity = 47/144 (32.64%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    7 GYALQMLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPRAVHPHWWAGGASTYNLAKI--DDGGGFGVTPAVLSTGGVLLTLARLQEVWGAEDFASSLLSA--------WATAPDLM--WSEYTLYRL 402
            G+  Q ++K+ A      EFY+T DADV+C++  +    +V   +G+A    EPR+ HP WW   A    ++    D   G  VTPA+LST         L  +W  +D+  +L S         W  +  LM  W+EY+LY L
Sbjct:   86 GWRKQQIVKIAAYTQFTDEFYITFDADVICLKPLSIEKLIV---QGKALLQYEPRSFHPKWWKSSARLLKMSPEVGDTSKGMHVTPAILSTKLAKQLTEELTTLWK-KDWVKALCSLHNPKHPGNWRISRFLMLKWTEYSLYYL 225          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5714.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYB4_9STRA4.880e-2941.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FYE1_ECTSI2.290e-2848.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2SU67_9STRA3.980e-2543.92Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482SN02_9ARCH1.440e-1333.77Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A819S7U7_9BILA4.910e-1234.39Hypothetical protein n=7 Tax=Rotaria TaxID=231623 ... [more]
A0A7S0MTN8_9CHLO1.560e-1039.26Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A8J5XPN4_DIALT4.780e-1040.26Uncharacterized protein n=3 Tax=Diacronema lutheri... [more]
UPI001ADD54858.730e-1030.13DUF6492 family protein n=1 Tax=Endozoicomonas sp. ... [more]
F0YHF8_AURAN3.950e-938.78Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
UPI001C091B374.190e-932.64DUF6492 family protein n=1 Tax=Aliiglaciecola lipo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5714contigP-wetherbeei_contig5714:164..769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1046714.AMRX01000003_gene59
Model size441
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.27e-07
EggNOG OGs2DUFP@1|root,33QF7@2|Bacteria,1NU95@1224|Proteobacteria,1SKH0@1236|Gammaproteobacteria,46AFU@72275|Alteromonadaceae
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003680.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.8739383-CDS-P-wetherbeei_contig5714:163..4101683186847.8739383-CDS-P-wetherbeei_contig5714:163..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5714 164..410 -
1683186847.8831773-CDS-P-wetherbeei_contig5714:575..7481683186847.8831773-CDS-P-wetherbeei_contig5714:575..748Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5714 576..748 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.8916106-UTR-P-wetherbeei_contig5714:748..7691683186847.8916106-UTR-P-wetherbeei_contig5714:748..769Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5714 749..769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5714.2.1prot_P-wetherbeei_contig5714.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5714 164..748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5714.2.1

>prot_P-wetherbeei_contig5714.2.1 ID=prot_P-wetherbeei_contig5714.2.1|Name=mRNA_P-wetherbeei_contig5714.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MLLKLLAARVIDTEFYVTLDADVVCVRRGAATADLVSRGEGQAAFVDEPR
AVHPHWWAGGASTYNLAKIDDGGGFGVTPAVLSTGGVLLTLARLQEVWGA
EDFASSLLSAWATAPDLMWSEYTLYRLTLRHLRMFYRLHA
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mRNA from alignment at P-wetherbeei_contig5714:164..769-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5714.2.1 ID=mRNA_P-wetherbeei_contig5714.2.1|Name=mRNA_P-wetherbeei_contig5714.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig5714:164..769- (Phaeothamnion wetherbeei SAG_119_79)
TGGCCCGGCTACGCCCTGCAGATGCTCCTCAAGCTGCTGGCGGCCCGGGT CATCGACACCGAGTTCTACGTCACGTTAGACGCCGACGTCGTCTGCGTTC GGCGGGGCGCCGCCACCGCCGACCTCGTTTCGCGGGGCGAGGGCCAGGCC GCCTTTGTGGACGAGCCGCGGGCGGTTCACCCGCACTGGTGGGCGTCTTC GGAGCACGTATTGGGGCTTCCGCCATACAGCTTGAGAAGGAGCGGCAAGG AGCTCGACGGTGGCGGCGACGGTGGCGGGATCAGCGACGATGGCGCGATC GGCAGCGCCGGCGACAGGGGCGGCAGCGGGGGGAAGAGCAGTCGCGGCGG CAGCACTAGCGGCGGCGCGAGCACCTACAACCTGGCCAAAATCGACGACG GCGGCGGGTTTGGCGTAACCCCGGCGGTGCTCAGCACGGGCGGCGTGCTC CTGACGCTCGCGCGGCTGCAGGAGGTGTGGGGAGCCGAAGACTTTGCGTC GTCGCTGCTGTCGGCATGGGCGACGGCGCCCGACCTCATGTGGAGCGAGT ACACGCTGTACCGGCTCACCTTGCGGCACCTGCGGATGTTTTACCGGCTG CACGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5714:164..769-

>mRNA_P-wetherbeei_contig5714.2.1 ID=mRNA_P-wetherbeei_contig5714.2.1|Name=mRNA_P-wetherbeei_contig5714.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig5714:164..769- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCTCAAGCTGCTGGCGGCCCGGGTCATCGACACCGAGTTCTACGT
CACGTTAGACGCCGACGTCGTCTGCGTTCGGCGGGGCGCCGCCACCGCCG
ACCTCGTTTCGCGGGGCGAGGGCCAGGCCGCCTTTGTGGACGAGCCGCGG
GCGGTTCACCCGCACTGGTGGGCCGGCGGCGCGAGCACCTACAACCTGGC
CAAAATCGACGACGGCGGCGGGTTTGGCGTAACCCCGGCGGTGCTCAGCA
CGGGCGGCGTGCTCCTGACGCTCGCGCGGCTGCAGGAGGTGTGGGGAGCC
GAAGACTTTGCGTCGTCGCTGCTGTCGGCATGGGCGACGGCGCCCGACCT
CATGTGGAGCGAGTACACGCTGTACCGGCTCACCTTGCGGCACCTGCGGA
TGTTTTACCGGCTGCACGCT
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