mRNA_P-wetherbeei_contig5712.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5712.1.1
Unique NamemRNA_P-wetherbeei_contig5712.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5712.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5712contigP-wetherbeei_contig5712:657..2734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1447
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSpindle associated
Ec32 orthologEc-27_006640.1
Cds size1383
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.6717498-CDS-P-wetherbeei_contig5712:656..12821683186847.6717498-CDS-P-wetherbeei_contig5712:656..1282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5712 657..1282 -
1683186847.6830156-CDS-P-wetherbeei_contig5712:1321..13761683186847.6830156-CDS-P-wetherbeei_contig5712:1321..1376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5712 1322..1376 -
1683186847.692856-CDS-P-wetherbeei_contig5712:1791..21851683186847.692856-CDS-P-wetherbeei_contig5712:1791..2185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5712 1792..2185 -
1683186847.7078402-CDS-P-wetherbeei_contig5712:2362..26701683186847.7078402-CDS-P-wetherbeei_contig5712:2362..2670Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5712 2363..2670 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.7228687-UTR-P-wetherbeei_contig5712:2670..27341683186847.7228687-UTR-P-wetherbeei_contig5712:2670..2734Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5712 2671..2734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5712.1.1prot_P-wetherbeei_contig5712.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5712 657..2670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5712.1.1

>prot_P-wetherbeei_contig5712.1.1 ID=prot_P-wetherbeei_contig5712.1.1|Name=mRNA_P-wetherbeei_contig5712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=461bp
MSTMALTPSPRSPCTPSPRSGSFTDPPRKRPPDVLFHRGNVGSGADAVAR
LQSRRASTTTLNNLNENLTLKQSEARIHELESAVFDSKMRFFYLQEQLRT
ASGGENNALQLHQAIIDLRVELDVTRARLAGTAEETRRWMDAAAGLQAAR
DRDQLDAMELRRQSAAAIAAAEHRHAEREAIFKERMRQEREDSEAVRQHA
ADSVGAMEGELQRMREQSAAAAGAADQVRAAMQLAEAAARDLAVRDREIA
RLPPGHRGGAGGGGGAAAVAMATAATAAARQGAATLRATLVVRDRELAAV
QGELARVRDAAETVASIEAEEIGELQAAAAAAEAARAAAADALERLRKEN
EALRGRAVELRRARRAVEDGARTAERRLLEEVAAAAARGERWRERAERWR
ERAEGLSDALREARREQESAVAALVEQIRSTSGQEERQLLPLPAPRSVGG
GDDDNAGGGGG
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mRNA from alignment at P-wetherbeei_contig5712:657..2734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5712.1.1 ID=mRNA_P-wetherbeei_contig5712.1.1|Name=mRNA_P-wetherbeei_contig5712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2078bp|location=Sequence derived from alignment at P-wetherbeei_contig5712:657..2734- (Phaeothamnion wetherbeei SAG_119_79)
TTCGTATTTAGTATTTAGTTGAGACAAACTTTGATAGTAAGAATGGCCTA
AAACTGGTAACCGAATGTCGACCATGGCGCTCACACCCTCTCCCCGCTCT
CCCTGCACGCCTTCACCTCGAAGCGGGAGCTTCACGGATCCCCCTCGCAA
AAGACCCCCGGACGTCTTGTTCCATCGTGGCAATGTCGGAAGCGGGGCAG
ACGCGGTAGCGCGCCTGCAAAGCCGCCGCGCGTCGACGACAACGTTAAAT
AACTTGAACGAGAATTTAACCTTGAAACAAAGTGAAGCTCGAATCCACGA
GCTGGAGAGCGCCGTCTTTGACAGCAAGATGCGCTTCTTCTACCTGCAAG
AGCAGCTTCGGACGGCGTCAGGGTAGGTGCACAAGTTCTCGCATTTTTCC
TCTTTCTTGTTGCATTGCAGGGTTGACCACGGCCCCGCAATGCTGCTTTC
TGTACGGCCAGGCTCCTGTGCTCATTCACGACCCCAACCTCGTGCCATAG
AGCCCTTTCGCCTCCACCCTAATGCCACAATTTATTCATTGTCCATCAGC
GGAGAGAACAACGCCCTCCAGCTGCATCAGGCCATTATCGATCTGCGCGT
TGAATTGGACGTCACACGCGCTCGCCTCGCCGGCACGGCCGAGGAGACCC
GTCGCTGGATGGACGCCGCGGCGGGCCTCCAGGCGGCTCGCGACCGTGAC
CAGCTGGATGCAATGGAGCTCCGGCGGCAGTCCGCCGCCGCCATTGCGGC
CGCCGAGCATCGGCACGCGGAAAGGGAAGCGATCTTCAAGGAGCGGATGC
GGCAGGAGCGGGAGGATAGCGAGGCCGTCCGGCAGCATGCGGCGGACAGT
GTCGGGGCGATGGAGGGCGAGTTGCAGCGGATGCGGGAGCAGTCGGCGGC
GGCCGCCGGCGCCGCGGATCAAGTGCGGGCGGCGATGCAACTGGTGGGTG
GTGCGGTTTCTCACTGGGTGGCATGTTCTTTGTTATATCGCCTTTTCTCA
CCTTGAGTCTGCATAGACTAATCCAATCAGCGCTATGCTTGTTTGCTTAA
TTGTGGTAGTTTCTTTGTCTCTGCAATCGGTTTGCGAAATCCGGGAATCA
CTGCTCGAAGAGTCTCTTCTTTTCCATAAAAGGTAGGATTATGCTAAGGC
GATGACGGCAGAACTGCTTTCACAAGGCATGAAAATGTACCGGCATCTCT
GCCTTTTCAATTTGGCGCGTCATTTTCGTCAACTTTGGGCTTCTGCGTTC
TCTTGGTTCTCTTTCCCCCTTGTCCGTTGGTTTAACCCAACCTCGTGTCA
ATGTACGGCAACACGTTGCAAAACCCCTTATCTCTCACCCAATAAAAACC
TCACGAAGGCCGAAGCGGCCGCGCGCGACCTGGCGGTCCGCGACCGTGAG
ATCGCCCGCCTCCGCCGGGAGTTAGAAGCATCCGGTGCTTCGGGTTCGAA
AGCGCCGGGACACCGCGGTGGCGCCGGCGGAGGTGGCGGGGCGGCGGCGG
TCGCCATGGCCACGGCCGCTACCGCCGCCGCTCGCCAGGGCGCGGCGACA
CTCCGCGCGACGCTGGTGGTGCGCGATCGGGAGCTGGCGGCGGTGCAGGG
CGAGCTGGCGCGGGTGCGGGACGCCGCAGAAACCGTTGCGAGCATCGAAG
CCGAGGAGATCGGCGAGCTGCAGGCGGCGGCTGCGGCGGCAGAGGCGGCG
CGGGCGGCGGCGGCTGACGCCTTGGAGCGGCTTAGGAAGGAGAACGAGGC
GTTGCGGGGCCGGGCGGTGGAGCTGCGGCGGGCACGGCGGGCGGTGGAGG
ACGGCGCACGAACGGCGGAGCGGCGGCTTCTGGAGGAGGTAGCGGCGGCG
GCGGCGCGCGGCGAGCGGTGGCGCGAGCGGGCGGAGCGGTGGCGAGAACG
CGCAGAGGGGCTCAGCGACGCACTGCGGGAGGCGCGGCGCGAGCAAGAGA
GCGCAGTGGCGGCGCTCGTGGAACAGATCCGCTCCACGTCGGGGCAGGAG
GAGCGGCAGCTGCTTCCATTGCCGGCGCCGCGCAGCGTTGGCGGTGGCGA
CGACGACAACGCCGGGGGCGGTGGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5712:657..2734-

>mRNA_P-wetherbeei_contig5712.1.1 ID=mRNA_P-wetherbeei_contig5712.1.1|Name=mRNA_P-wetherbeei_contig5712.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1383bp|location=Sequence derived from alignment at P-wetherbeei_contig5712:657..2734- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGACCATGGCGCTCACACCCTCTCCCCGCTCTCCCTGCACGCCTTC
ACCTCGAAGCGGGAGCTTCACGGATCCCCCTCGCAAAAGACCCCCGGACG
TCTTGTTCCATCGTGGCAATGTCGGAAGCGGGGCAGACGCGGTAGCGCGC
CTGCAAAGCCGCCGCGCGTCGACGACAACGTTAAATAACTTGAACGAGAA
TTTAACCTTGAAACAAAGTGAAGCTCGAATCCACGAGCTGGAGAGCGCCG
TCTTTGACAGCAAGATGCGCTTCTTCTACCTGCAAGAGCAGCTTCGGACG
GCGTCAGGCGGAGAGAACAACGCCCTCCAGCTGCATCAGGCCATTATCGA
TCTGCGCGTTGAATTGGACGTCACACGCGCTCGCCTCGCCGGCACGGCCG
AGGAGACCCGTCGCTGGATGGACGCCGCGGCGGGCCTCCAGGCGGCTCGC
GACCGTGACCAGCTGGATGCAATGGAGCTCCGGCGGCAGTCCGCCGCCGC
CATTGCGGCCGCCGAGCATCGGCACGCGGAAAGGGAAGCGATCTTCAAGG
AGCGGATGCGGCAGGAGCGGGAGGATAGCGAGGCCGTCCGGCAGCATGCG
GCGGACAGTGTCGGGGCGATGGAGGGCGAGTTGCAGCGGATGCGGGAGCA
GTCGGCGGCGGCCGCCGGCGCCGCGGATCAAGTGCGGGCGGCGATGCAAC
TGGCCGAAGCGGCCGCGCGCGACCTGGCGGTCCGCGACCGTGAGATCGCC
CGCCTCCCGCCGGGACACCGCGGTGGCGCCGGCGGAGGTGGCGGGGCGGC
GGCGGTCGCCATGGCCACGGCCGCTACCGCCGCCGCTCGCCAGGGCGCGG
CGACACTCCGCGCGACGCTGGTGGTGCGCGATCGGGAGCTGGCGGCGGTG
CAGGGCGAGCTGGCGCGGGTGCGGGACGCCGCAGAAACCGTTGCGAGCAT
CGAAGCCGAGGAGATCGGCGAGCTGCAGGCGGCGGCTGCGGCGGCAGAGG
CGGCGCGGGCGGCGGCGGCTGACGCCTTGGAGCGGCTTAGGAAGGAGAAC
GAGGCGTTGCGGGGCCGGGCGGTGGAGCTGCGGCGGGCACGGCGGGCGGT
GGAGGACGGCGCACGAACGGCGGAGCGGCGGCTTCTGGAGGAGGTAGCGG
CGGCGGCGGCGCGCGGCGAGCGGTGGCGCGAGCGGGCGGAGCGGTGGCGA
GAACGCGCAGAGGGGCTCAGCGACGCACTGCGGGAGGCGCGGCGCGAGCA
AGAGAGCGCAGTGGCGGCGCTCGTGGAACAGATCCGCTCCACGTCGGGGC
AGGAGGAGCGGCAGCTGCTTCCATTGCCGGCGCCGCGCAGCGTTGGCGGT
GGCGACGACGACAACGCCGGGGGCGGTGGGGGC
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