mRNA_P-wetherbeei_contig57107.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57107.1.1
Unique NamemRNA_P-wetherbeei_contig57107.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A3D4ISJ6_9BACT (Saccharopine dehydrogenase n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D4ISJ6_9BACT)

HSP 1 Score: 313 bits (803), Expect = 8.700e-105
Identity = 148/170 (87.06%), Postives = 161/170 (94.71%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMGF+TVK VIESGKNMVDISFFPEDPFLLD+LAKK+NVT++TDCGVAPGMGNIILGYHN+RM ++ YECLVGGLP+VREWPY+YKAVFSPIDVIEEY+RPARYVQ+S IV KEALSD E I FDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPG +EYLRVLR
Sbjct:   74 GFMGFQTVKAVIESGKNMVDISFFPEDPFLLDELAKKNNVTIVTDCGVAPGMGNIILGYHNQRMKIEKYECLVGGLPVVREWPYEYKAVFSPIDVIEEYIRPARYVQNSAIVVKEALSDPENIYFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGCVEYLRVLR 243
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A401U5L6_9BACT (Saccharopine dehydrogenase n=2 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401U5L6_9BACT)

HSP 1 Score: 311 bits (798), Expect = 4.990e-104
Identity = 146/170 (85.88%), Postives = 157/170 (92.35%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMGF   KTVIE+GKNMVDISFFPEDPFLLDDLAKKH VT++TDCGVAPGMGNIILGYHNKRM ++ YECLVGGLPLVREWPY+YKAVFSPIDVIEEY+RPARYVQ+  +V KEALSD EL+ FD VGTLESWNSDGLRSLI+TMPNIPNMIEKTLRYPG IEYLRVLR
Sbjct:   77 GFMGFNIAKTVIEAGKNMVDISFFPEDPFLLDDLAKKHGVTIVTDCGVAPGMGNIILGYHNKRMQIQQYECLVGGLPLVREWPYEYKAVFSPIDVIEEYIRPARYVQNGALVVKEALSDPELVHFDDVGTLESWNSDGLRSLIRTMPNIPNMIEKTLRYPGCIEYLRVLR 246
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: UPI00191F6275 (saccharopine dehydrogenase NADP-binding domain-containing protein n=1 Tax=Chryseolinea sp. Jin1 TaxID=2801331 RepID=UPI00191F6275)

HSP 1 Score: 307 bits (787), Expect = 2.330e-102
Identity = 144/170 (84.71%), Postives = 157/170 (92.35%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMG +TV+TVIE+GKN+ DISFFPEDPF LDDLAKK+NVTV+TDCGVAPGMGNIILGYHN+RM +  YECLVGGLP+VREWPY+YKAVFSPIDVIEEY+RPARYVQ   ++ KEALSD ELI FDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPG IEYLRVLR
Sbjct:   73 GFMGLQTVRTVIEAGKNIADISFFPEDPFQLDDLAKKNNVTVVTDCGVAPGMGNIILGYHNRRMKITDYECLVGGLPVVREWPYEYKAVFSPIDVIEEYIRPARYVQQGAVIIKEALSDPELIHFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGCIEYLRVLR 242
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A136LVU8_9BACT (Saccharopine dehydrogenase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A136LVU8_9BACT)

HSP 1 Score: 306 bits (785), Expect = 4.390e-102
Identity = 143/170 (84.12%), Postives = 158/170 (92.94%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            G MGF+T KT+IE+GKNMVDISFFPEDPFLLDDLAKK+NVT++TDCGVAPGMGNIILGYHN+RM +  YECLVGGLP+VREWPY+YKAVFSP+DVIEEY+RPARYVQ+  +V KEALSD EL+ FD VGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPG IEYLRVLR
Sbjct:   73 GAMGFQTAKTIIEAGKNMVDISFFPEDPFLLDDLAKKNNVTIVTDCGVAPGMGNIILGYHNQRMEITDYECLVGGLPVVREWPYEYKAVFSPMDVIEEYIRPARYVQNKTVVIKEALSDPELVHFDEVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGCIEYLRVLR 242
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A3D5KNN9_9BACT (Saccharopine dehydrogenase (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D5KNN9_9BACT)

HSP 1 Score: 302 bits (774), Expect = 6.440e-101
Identity = 139/170 (81.76%), Postives = 158/170 (92.94%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMG K  +TVIE+GKNMVDISFFPEDPF LD+ AKK NVT++TDCGVAPGMGNIILGYH+KRM + SYECLVGGLP+ REWPY+YKAVFSPIDVIEEY+RPARYVQ+ +++T+EALSD+EL+ FDGVGTLESWNSDGLRSLIKTMP+IPNMIEKTLRYPG +EYLRVLR
Sbjct:   35 GFMGLKNTQTVIEAGKNMVDISFFPEDPFQLDEAAKKKNVTIVTDCGVAPGMGNIILGYHDKRMKIDSYECLVGGLPVTREWPYEYKAVFSPIDVIEEYIRPARYVQNHQMITREALSDTELVHFDGVGTLESWNSDGLRSLIKTMPHIPNMIEKTLRYPGCVEYLRVLR 204
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: UPI0019F8E0F9 (Saccharopine reductase n=1 Tax=Cytophagales bacterium WSM2-2 TaxID=2774202 RepID=UPI0019F8E0F9)

HSP 1 Score: 303 bits (775), Expect = 1.580e-100
Identity = 140/170 (82.35%), Postives = 158/170 (92.94%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMG +  +T+I++GKNMVDISFFPEDPF LD+ AKK NVT++TDCGVAPGMGNIILGYHNKRM +++YECLVGGLP+VREWPY+YKAVFSPIDVIEEY+RPARYVQ+  ++TKEALSD ELI FDGVGTLESWNSDGLRSLIKTMP+IPNMIEKTLRYPG IEYLRVLR
Sbjct:   74 GFMGLRNAQTIIDAGKNMVDISFFPEDPFQLDEAAKKKNVTIVTDCGVAPGMGNIILGYHNKRMKIQNYECLVGGLPVVREWPYEYKAVFSPIDVIEEYIRPARYVQNHAMITKEALSDPELIHFDGVGTLESWNSDGLRSLIKTMPHIPNMIEKTLRYPGCIEYLRVLR 243
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A1M5S342_9BACT (Saccharopine dehydrogenase, NADP-dependent n=2 Tax=Chryseolinea TaxID=1433993 RepID=A0A1M5S342_9BACT)

HSP 1 Score: 299 bits (766), Expect = 3.550e-99
Identity = 142/170 (83.53%), Postives = 153/170 (90.00%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMG +TV+TVIE+GKN+ DISFFPEDPF LD+LAKK NVTVITDCGVAPGMGNIILGYH  RM +  YECLVGGLP+VREWPY+YKAVFSPIDVIEEY+RPARYVQ   ++ KEALSD ELI FDGVGTLESWNSDGLRSLIKTMP IPNMIEKTLRYPG IEYLRVLR
Sbjct:   73 GFMGLQTVRTVIEAGKNIADISFFPEDPFQLDELAKKKNVTVITDCGVAPGMGNIILGYHYHRMKITDYECLVGGLPVVREWPYEYKAVFSPIDVIEEYIRPARYVQQGAVIVKEALSDPELIHFDGVGTLESWNSDGLRSLIKTMPGIPNMIEKTLRYPGCIEYLRVLR 242
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A364Y033_9BACT (Saccharopine dehydrogenase n=1 Tax=Chryseolinea flava TaxID=2059302 RepID=A0A364Y033_9BACT)

HSP 1 Score: 293 bits (750), Expect = 1.010e-96
Identity = 135/170 (79.41%), Postives = 156/170 (91.76%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GF+GF+ VK VIE+GKN+VDISFFPED FLLDD+AK++NVTV+TDCGVAPGM N+ILGYH+ RM + +YECLVGGLP+VREWPY+YKAVFSPIDVIEEY+RPARYVQ+  +V KEALSD ELI F+G+GTLESWNSDGLRSLIKT+P +PNMIEKTLRYPG IEYLRVLR
Sbjct:   73 GFLGFQMVKNVIEAGKNIVDISFFPEDSFLLDDIAKQNNVTVVTDCGVAPGMSNLILGYHHPRMKIDTYECLVGGLPVVREWPYEYKAVFSPIDVIEEYIRPARYVQNGAVVVKEALSDPELIHFEGIGTLESWNSDGLRSLIKTIPGVPNMIEKTLRYPGCIEYLRVLR 242
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A6I6JRI0_9BACT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Maribellus comscasis TaxID=2681766 RepID=A0A6I6JRI0_9BACT)

HSP 1 Score: 291 bits (745), Expect = 5.760e-96
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMG++T+K VI+SGKNMVDISF PED   LD LAKKH VTV+ DCGVAPGMGNIILGYHNK M VKSYECLVGGLP++REWPY+YKAVFSPIDVIEEY RPAR+VQ+ E+VTKEALSD ELI F+G+GTLESWNSDGLRSL++TM NIP+MIEKTLRYPG IEYLRVLR
Sbjct:   74 GFMGYQTMKAVIQSGKNMVDISFMPEDFMQLDGLAKKHRVTVVADCGVAPGMGNIILGYHNKNMQVKSYECLVGGLPVIREWPYEYKAVFSPIDVIEEYTRPARFVQNYEMVTKEALSDPELIHFEGIGTLESWNSDGLRSLMQTMKNIPDMIEKTLRYPGCIEYLRVLR 243
[Close]
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Match: A0A2E6BUZ1_9FLAO (Saccharopine dehydrogenase n=3 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E6BUZ1_9FLAO)

HSP 1 Score: 288 bits (738), Expect = 5.320e-95
Identity = 131/170 (77.06%), Postives = 154/170 (90.59%), Query Frame = 1 
Query:    1 GFMGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGMGNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRPARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNMIEKTLRYPGNIEYLRVLR 510
            GFMG++T++T+I++GKN VDISFFPEDPF LD+LAK+  V  + DCGVAPGMGNIILGYHN  M +  YECLVGGLP +REWPY+YKAVFSPIDVIEEY+RPARYVQ+ ++VTKEALSD+ELIKF+G+GTLESWNSDGLRSLI TMP+IPNMIEKTLRYPG +EYL+VLR
Sbjct:   73 GFMGYQTLETIIKAGKNCVDISFFPEDPFGLDELAKEMGVVAVMDCGVAPGMGNIILGYHNNHMKISDYECLVGGLPEIREWPYEYKAVFSPIDVIEEYIRPARYVQNGQVVTKEALSDTELIKFEGIGTLESWNSDGLRSLINTMPHIPNMIEKTLRYPGCVEYLKVLR 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57107.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D4ISJ6_9BACT8.700e-10587.06Saccharopine dehydrogenase n=1 Tax=Cytophagales ba... [more]
A0A401U5L6_9BACT4.990e-10485.88Saccharopine dehydrogenase n=2 Tax=Chryseotalea sa... [more]
UPI00191F62752.330e-10284.71saccharopine dehydrogenase NADP-binding domain-con... [more]
A0A136LVU8_9BACT4.390e-10284.12Saccharopine dehydrogenase n=2 Tax=Bacteroidetes T... [more]
A0A3D5KNN9_9BACT6.440e-10181.76Saccharopine dehydrogenase (Fragment) n=1 Tax=Cyto... [more]
UPI0019F8E0F91.580e-10082.35Saccharopine reductase n=1 Tax=Cytophagales bacter... [more]
A0A1M5S342_9BACT3.550e-9983.53Saccharopine dehydrogenase, NADP-dependent n=2 Tax... [more]
A0A364Y033_9BACT1.010e-9679.41Saccharopine dehydrogenase n=1 Tax=Chryseolinea fl... [more]
A0A6I6JRI0_9BACT5.760e-9681.18NAD-dependent epimerase/dehydratase family protein... [more]
A0A2E6BUZ1_9FLAO5.320e-9577.06Saccharopine dehydrogenase n=3 Tax=Flavobacteriale... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57107contigP-wetherbeei_contig57107:2..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121904.ARBP01000005_gene4880
PFAMsSacchrp_dh_C,Sacchrp_dh_NADP
Model size510
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.26e-87
EggNOG OGsCOG1748@1|root,COG1748@2|Bacteria,4NFM8@976|Bacteroidetes
DescriptionSaccharopine dehydrogenase
Cds size504
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.5654109-CDS-P-wetherbeei_contig57107:1..5051683186847.5654109-CDS-P-wetherbeei_contig57107:1..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57107 2..505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.576245-UTR-P-wetherbeei_contig57107:505..5111683186847.576245-UTR-P-wetherbeei_contig57107:505..511Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57107 506..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57107.1.1prot_P-wetherbeei_contig57107.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57107 2..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57107.1.1

>prot_P-wetherbeei_contig57107.1.1 ID=prot_P-wetherbeei_contig57107.1.1|Name=mRNA_P-wetherbeei_contig57107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MGFKTVKTVIESGKNMVDISFFPEDPFLLDDLAKKHNVTVITDCGVAPGM
GNIILGYHNKRMTVKSYECLVGGLPLVREWPYDYKAVFSPIDVIEEYVRP
ARYVQSSEIVTKEALSDSELIKFDGVGTLESWNSDGLRSLIKTMPNIPNM
IEKTLRYPGNIEYLRVLR
back to top

mRNA from alignment at P-wetherbeei_contig57107:2..511-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57107.1.1 ID=mRNA_P-wetherbeei_contig57107.1.1|Name=mRNA_P-wetherbeei_contig57107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig57107:2..511- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCATGGGCTTTAAAACCGTGAAGACAGTTATTGAAAGCGGAAAGAA
TATGGTTGACATTTCTTTCTTCCCGGAAGATCCGTTTTTACTGGATGACC
TTGCCAAAAAACATAATGTAACGGTTATAACGGATTGTGGCGTTGCGCCA
GGCATGGGCAATATCATATTAGGTTATCATAATAAACGTATGACCGTAAA
ATCATATGAATGTCTTGTAGGCGGATTGCCCCTTGTACGTGAATGGCCTT
ATGATTACAAAGCTGTTTTTTCACCGATTGATGTTATTGAGGAATACGTT
CGCCCTGCGCGCTATGTTCAGAGCAGTGAGATTGTAACGAAAGAAGCATT
ATCTGATTCAGAGCTGATCAAGTTTGACGGTGTAGGAACGTTAGAGTCGT
GGAATTCAGACGGACTTCGGTCATTGATTAAAACGATGCCCAACATTCCG
AACATGATTGAAAAGACTTTACGCTATCCAGGCAACATTGAATATCTCCG
CGTATTGCGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig57107:2..511-

>mRNA_P-wetherbeei_contig57107.1.1 ID=mRNA_P-wetherbeei_contig57107.1.1|Name=mRNA_P-wetherbeei_contig57107.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig57107:2..511- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCTTTAAAACCGTGAAGACAGTTATTGAAAGCGGAAAGAATATGGT
TGACATTTCTTTCTTCCCGGAAGATCCGTTTTTACTGGATGACCTTGCCA
AAAAACATAATGTAACGGTTATAACGGATTGTGGCGTTGCGCCAGGCATG
GGCAATATCATATTAGGTTATCATAATAAACGTATGACCGTAAAATCATA
TGAATGTCTTGTAGGCGGATTGCCCCTTGTACGTGAATGGCCTTATGATT
ACAAAGCTGTTTTTTCACCGATTGATGTTATTGAGGAATACGTTCGCCCT
GCGCGCTATGTTCAGAGCAGTGAGATTGTAACGAAAGAAGCATTATCTGA
TTCAGAGCTGATCAAGTTTGACGGTGTAGGAACGTTAGAGTCGTGGAATT
CAGACGGACTTCGGTCATTGATTAAAACGATGCCCAACATTCCGAACATG
ATTGAAAAGACTTTACGCTATCCAGGCAACATTGAATATCTCCGCGTATT
GCGT
back to top