mRNA_P-wetherbeei_contig57093.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57093.2.1
Unique NamemRNA_P-wetherbeei_contig57093.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57093.2.1 vs. uniprot
Match: A0A6P1R9I1_9BRAD (Uncharacterized protein n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A6P1R9I1_9BRAD)

HSP 1 Score: 57.4 bits (137), Expect = 3.110e-9
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 MKKSILAIAAAALIASTPFALAKNAKSSAPGQMMQKNGSVAGSPGASGYAPGHLKK 168
            MK  I+A++AAAL+A+ P   A+   S APGQ MQ+ GS  G PGAS YAPGH K+
Sbjct:    1 MKAKIIALSAAALVATAPAVFAQGVSSKAPGQEMQQMGSKTGEPGASSYAPGHKKR 56
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BLAST of mRNA_P-wetherbeei_contig57093.2.1 vs. uniprot
Match: UPI00048966FE (hypothetical protein n=1 Tax=Bradyrhizobium sp. WSM2254 TaxID=1188263 RepID=UPI00048966FE)

HSP 1 Score: 57.4 bits (137), Expect = 3.410e-9
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 MKKSILAIAAAALIASTPFALAKNAKSSAPGQMMQKNGSVAGSPGASGYAPGHLK 165
            MK  I+A++AAAL+A+ P   A+ A S APGQ MQ+ GS  G PGAS YAPGH K
Sbjct:    1 MKAKIIALSAAALMATAPAVFAQGASSKAPGQEMQQMGSKKGEPGASSYAPGHKK 55
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BLAST of mRNA_P-wetherbeei_contig57093.2.1 vs. uniprot
Match: UPI001EE2AE39 (hypothetical protein n=1 Tax=Methylobacterium iners TaxID=418707 RepID=UPI001EE2AE39)

HSP 1 Score: 52.0 bits (123), Expect = 2.970e-7
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    1 MKKSILAIAAAALIASTPFALAKNAKSSAPGQMMQKNGSVAGSPGASGYAPGHLKKKRT 177
            MK+  +A+     +A    A  + A S APGQ MQ+ GSV GSPGASGYAPG  KK  T
Sbjct:    1 MKRLSIAVVTTFALAGAALAAEQGASSKAPGQQMQEKGSVPGSPGASGYAPGQEKKSDT 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57093.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6P1R9I1_9BRAD3.110e-955.36Uncharacterized protein n=5 Tax=Bradyrhizobium Tax... [more]
UPI00048966FE3.410e-958.18hypothetical protein n=1 Tax=Bradyrhizobium sp. WS... [more]
UPI001EE2AE392.970e-750.85hypothetical protein n=1 Tax=Methylobacterium iner... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57093contigP-wetherbeei_contig57093:287..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size189
Hectar predicted targeting categorysignal peptide
Exons1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.3253808-CDS-P-wetherbeei_contig57093:286..4751683186847.3253808-CDS-P-wetherbeei_contig57093:286..475Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57093 287..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57093.2.1prot_P-wetherbeei_contig57093.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57093 287..475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57093.2.1

>prot_P-wetherbeei_contig57093.2.1 ID=prot_P-wetherbeei_contig57093.2.1|Name=mRNA_P-wetherbeei_contig57093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MKKSILAIAAAALIASTPFALAKNAKSSAPGQMMQKNGSVAGSPGASGYA
PGHLKKKRTSAAK
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mRNA from alignment at P-wetherbeei_contig57093:287..475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57093.2.1 ID=mRNA_P-wetherbeei_contig57093.2.1|Name=mRNA_P-wetherbeei_contig57093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig57093:287..475- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAATCAATTCTTGCCATTGCTGCCGCCGCCCTTATCGCGTCTAC
GCCCTTCGCTCTTGCCAAGAACGCTAAATCAAGCGCGCCTGGCCAGATGA
TGCAGAAGAACGGCTCCGTCGCCGGCAGCCCAGGTGCCTCGGGTTATGCT
CCGGGCCATCTGAAGAAAAAAAGAACCAGCGCCGCGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57093:287..475-

>mRNA_P-wetherbeei_contig57093.2.1 ID=mRNA_P-wetherbeei_contig57093.2.1|Name=mRNA_P-wetherbeei_contig57093.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig57093:287..475- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGAAATCAATTCTTGCCATTGCTGCCGCCGCCCTTATCGCGTCTAC
GCCCTTCGCTCTTGCCAAGAACGCTAAATCAAGCGCGCCTGGCCAGATGA
TGCAGAAGAACGGCTCCGTCGCCGGCAGCCCAGGTGCCTCGGGTTATGCT
CCGGGCCATCTGAAGAAAAAAAGAACCAGCGCCGCGAAG
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