mRNA_P-wetherbeei_contig57091.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57091.1.1
Unique NamemRNA_P-wetherbeei_contig57091.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: Q89KC1_BRADU (Bll4986 protein n=215 Tax=Proteobacteria TaxID=1224 RepID=Q89KC1_BRADU)

HSP 1 Score: 316 bits (810), Expect = 1.490e-106
Identity = 163/171 (95.32%), Postives = 165/171 (96.49%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQS DGSERLN DEV LTRKRMVA GVPDADKMSDEDIQA FAERARSFLEDAPTTAA+AA IILDGVKAERWRILVGEDA+RLDE
Sbjct:  126 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSADGSERLNADEVALTRKRMVAAGVPDADKMSDEDIQAAFAERARSFLEDAPTTAARAAKIILDGVKAERWRILVGEDAKRLDE 296
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: A0A1G8NSP3_9BRAD (Short-chain dehydrogenase n=2 Tax=Bradyrhizobium sp. Rc2d TaxID=1855321 RepID=A0A1G8NSP3_9BRAD)

HSP 1 Score: 311 bits (798), Expect = 3.770e-104
Identity = 160/171 (93.57%), Postives = 164/171 (95.91%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            LGVRTFLPMLVAADEAHIVNTASVNGFWASIGM QAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQS+DGS+RLN DEV LTRKRMVA GVPDADKMSD DIQA FAERARSFLEDAPTTAA+AA IILDGVKAERWRILVGEDA+RLDE
Sbjct:  167 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMNQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSSDGSDRLNADEVALTRKRMVAAGVPDADKMSDNDIQAAFAERARSFLEDAPTTAAEAAKIILDGVKAERWRILVGEDAKRLDE 337
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: UPI00055208EB (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Bradyrhizobium sp. CCBAU 43298 TaxID=1128178 RepID=UPI00055208EB)

HSP 1 Score: 290 bits (743), Expect = 2.240e-98
Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 1 
Query:   37 ADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            ADEAHIVNTASVNGFWASIGM QAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQS DGSERLN DEV LTRKRMVA GVPDAD+MSDEDIQAVFAERARSFLEDAPTTAA+AA IILDGV+AERWRILVGEDA+RLDE
Sbjct:    1 ADEAHIVNTASVNGFWASIGMNQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSADGSERLNADEVALTRKRMVAAGVPDADRMSDEDIQAVFAERARSFLEDAPTTAAEAAKIILDGVRAERWRILVGEDAKRLDE 159
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: UPI000467C351 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Bradyrhizobium sp. ARR65 TaxID=1040989 RepID=UPI000467C351)

HSP 1 Score: 265 bits (676), Expect = 3.070e-86
Identity = 135/171 (78.95%), Postives = 153/171 (89.47%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            LGVRTFLPML+ ADEAHI+NT+SVNGFWAS+GMG AHTAYS+AKFAVKGFTEALINDLRL+APH+KCSVVMPGHIGT+IVSN+RKVQS  GSERL+ +E+  TR R+  NGV   D+MSDE IQ++ AERAR FLEDAPTTAAQAA IILDGV+AE+WRILVGEDA RLDE
Sbjct:  126 LGVRTFLPMLMKADEAHIINTSSVNGFWASVGMGVAHTAYSAAKFAVKGFTEALINDLRLNAPHIKCSVVMPGHIGTAIVSNTRKVQS--GSERLSENEIAQTRVRLKTNGVEGVDQMSDEQIQSLAAERARIFLEDAPTTAAQAAKIILDGVRAEKWRILVGEDAHRLDE 294
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: UPI000496C134 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI000496C134)

HSP 1 Score: 262 bits (670), Expect = 2.580e-85
Identity = 135/171 (78.95%), Postives = 151/171 (88.30%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            LGVRTFLPMLV ADE HIVNT+SVNGFWAS+G+G +HTAYS+AKFAVKGFTEALINDLRL+APH+KCSVVMPGHIGTSIVSNSRKVQ+   SERL  +E+  TR R+ A G+ DA KMSDED+QA  AERARSF E+APTTAAQAA IILDGVKA RWRILVG+DA+RLDE
Sbjct:  126 LGVRTFLPMLVKADEGHIVNTSSVNGFWASVGLGVSHTAYSAAKFAVKGFTEALINDLRLNAPHIKCSVVMPGHIGTSIVSNSRKVQNGTDSERLGENEIAQTRVRLTAAGI-DASKMSDEDVQAAAAERARSFREEAPTTAAQAAKIILDGVKAGRWRILVGDDAQRLDE 295
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: A0A1M7EIM1_9BRAD (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M7EIM1_9BRAD)

HSP 1 Score: 259 bits (661), Expect = 5.960e-84
Identity = 133/171 (77.78%), Postives = 150/171 (87.72%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            LGVRTFLPML+ ADE HIVNT+SVNGFWAS+GMG AHTAYS+AKFAVKGFTEALINDLRL+APH+KCSVVMPGHIGTSIVSNSRK+QS   SERLN +E++ TR+R+   GV D   MSDEDIQ +  +RARSF ++APTTAAQAA IILDGVKAERWRILVG+DA RLDE
Sbjct:  126 LGVRTFLPMLLKADEGHIVNTSSVNGFWASVGMGVAHTAYSAAKFAVKGFTEALINDLRLNAPHIKCSVVMPGHIGTSIVSNSRKIQSGSESERLNDNELLATRQRLKGMGV-DTAPMSDEDIQQIALDRARSFRDEAPTTAAQAAKIILDGVKAERWRILVGDDAHRLDE 295
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: A4YVR6_BRASO (Putative short-chain dehydrogenase n=15 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A4YVR6_BRASO)

HSP 1 Score: 258 bits (659), Expect = 7.020e-84
Identity = 133/170 (78.24%), Postives = 148/170 (87.06%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLD 510
            LGVRTFLPML+ ADEAHIVNT+SVNGFWAS+GMG +HTAYS+AKFAVKGFTEALINDLRL+APH+KCSVVMPGHIGTSIVSNSRKVQS  GS+ L+  E+ L R+RM   G+ D   MSD+DIQ    ERARSFLEDAPTTAAQAA IILDGVKAE+WRILVGEDA+ LD
Sbjct:  109 LGVRTFLPMLLKADEAHIVNTSSVNGFWASVGMGVSHTAYSAAKFAVKGFTEALINDLRLNAPHIKCSVVMPGHIGTSIVSNSRKVQSGGGSDELSETEIALARQRMKGMGI-DVSAMSDQDIQNAARERARSFLEDAPTTAAQAAKIILDGVKAEQWRILVGEDAKLLD 277
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: A0A1M5STE7_9BRAD (Short-chain dehydrogenase n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5STE7_9BRAD)

HSP 1 Score: 255 bits (652), Expect = 1.380e-82
Identity = 130/171 (76.02%), Postives = 151/171 (88.30%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            LGVRTFLP+LV ADE HI+NT+SVNGFWASIGMG +HTAYSSAKFAVKGFTEALINDLRL+APH+KCSVVMPGH+GTSIVSNSRKVQS   S+RL+ +EV LTR R+ A G+ DA  MSD+++QA+ AERARSF +DAP TAA AA +ILDGVKA +WRILVG+DAR+LDE
Sbjct:  126 LGVRTFLPLLVKADEGHIINTSSVNGFWASIGMGVSHTAYSSAKFAVKGFTEALINDLRLNAPHIKCSVVMPGHVGTSIVSNSRKVQSGTDSDRLSDNEVALTRVRLSAGGI-DASTMSDDEVQALAAERARSFRDDAPMTAAAAAKVILDGVKAGQWRILVGDDARQLDE 295
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: H0TLK7_9BRAD (Putative short-chain dehydrogenase n=2 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TLK7_9BRAD)

HSP 1 Score: 251 bits (642), Expect = 2.660e-81
Identity = 128/169 (75.74%), Postives = 147/169 (86.98%), Query Frame = 1 
Query:    4 GVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLD 510
            GVRTFLPML+ A+EAHI+NT+SVNGFWAS+G G AHTAYS+AKFAVKGFTEALINDLRL+APH+KCSVVMPGHIGT+IVSNSRKVQS   S+RL+  E++  R+RM   G+ D D MSDED+QA  AERAR F+EDAPTTAAQAA IILDGVK E+WRILVGEDA+ LD
Sbjct:  110 GVRTFLPMLMRAEEAHIINTSSVNGFWASVGTGVAHTAYSAAKFAVKGFTEALINDLRLNAPHIKCSVVMPGHIGTAIVSNSRKVQSGTDSDRLSETELLQARQRMKGIGI-DVDTMSDEDVQAAAAERARRFMEDAPTTAAQAARIILDGVKTEQWRILVGEDAKLLD 277
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BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Match: UPI001BA64FA5 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA64FA5)

HSP 1 Score: 250 bits (639), Expect = 1.290e-80
Identity = 126/171 (73.68%), Postives = 149/171 (87.13%), Query Frame = 1 
Query:    1 LGVRTFLPMLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDLRLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMVANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERWRILVGEDARRLDE 513
            LGVRTFLP+L+ ADEAHIVNT+SVNGFWAS+GMG AHTAYS+AKFAVKGFTEALINDLRL+APH+KCSVVMPGHIGTSIVSNSRK+QS   S +L+ +E++ TR+R+   G+ D   MSD+DIQ +  +RAR+FLE APTTAA AA +ILDGVKA+RWRILVG+DA RLDE
Sbjct:  126 LGVRTFLPLLMKADEAHIVNTSSVNGFWASVGMGVAHTAYSAAKFAVKGFTEALINDLRLNAPHIKCSVVMPGHIGTSIVSNSRKIQSGSESGQLSSNEILATRQRLKGMGI-DTGPMSDDDIQQIALDRARTFLEQAPTTAAAAAKVILDGVKADRWRILVGDDAHRLDE 295
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57091.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q89KC1_BRADU1.490e-10695.32Bll4986 protein n=215 Tax=Proteobacteria TaxID=122... [more]
A0A1G8NSP3_9BRAD3.770e-10493.57Short-chain dehydrogenase n=2 Tax=Bradyrhizobium s... [more]
UPI00055208EB2.240e-9893.71SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI000467C3513.070e-8678.95SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
UPI000496C1342.580e-8578.95SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A1M7EIM1_9BRAD5.960e-8477.78NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]
A4YVR6_BRASO7.020e-8478.24Putative short-chain dehydrogenase n=15 Tax=Bradyr... [more]
A0A1M5STE7_9BRAD1.380e-8276.02Short-chain dehydrogenase n=1 Tax=Bradyrhizobium e... [more]
H0TLK7_9BRAD2.660e-8175.74Putative short-chain dehydrogenase n=2 Tax=Bradyrh... [more]
UPI001BA64FA51.290e-8073.68SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57091contigP-wetherbeei_contig57091:1..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog335659.S23_31980
Preferred nameMA20_36825
PFAMsadh_short
Model size513
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-102
EggNOG OGsCOG4221@1|root,COG4221@2|Bacteria,1QTXD@1224|Proteobacteria,2TVH8@28211|Alphaproteobacteria,3JS6S@41294|Bradyrhizobiaceae
DescriptionKR domain
Cds size489
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.253374-UTR-P-wetherbeei_contig57091:0..241683186847.253374-UTR-P-wetherbeei_contig57091:0..24Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig57091 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.270027-CDS-P-wetherbeei_contig57091:24..5131683186847.270027-CDS-P-wetherbeei_contig57091:24..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57091 25..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57091.1.1prot_P-wetherbeei_contig57091.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57091 25..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57091.1.1

>prot_P-wetherbeei_contig57091.1.1 ID=prot_P-wetherbeei_contig57091.1.1|Name=mRNA_P-wetherbeei_contig57091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MLVAADEAHIVNTASVNGFWASIGMGQAHTAYSSAKFAVKGFTEALINDL
RLHAPHVKCSVVMPGHIGTSIVSNSRKVQSTDGSERLNPDEVVLTRKRMV
ANGVPDADKMSDEDIQAVFAERARSFLEDAPTTAAQAATIILDGVKAERW
RILVGEDARRLDE
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mRNA from alignment at P-wetherbeei_contig57091:1..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57091.1.1 ID=mRNA_P-wetherbeei_contig57091.1.1|Name=mRNA_P-wetherbeei_contig57091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig57091:1..513+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGGCGTGCGCACCTTCCTGCCGATGCTGGTGGCCGCCGACGAGGCGCA
CATCGTCAACACCGCAAGCGTCAACGGCTTCTGGGCCTCGATCGGCATGG
GACAGGCGCACACCGCCTACAGCTCGGCCAAGTTCGCGGTGAAAGGATTT
ACCGAAGCGCTCATCAACGACCTTCGGCTGCACGCGCCGCATGTCAAATG
CTCGGTGGTGATGCCCGGTCATATCGGCACCTCGATCGTCTCTAACTCGC
GCAAGGTGCAGAGCACCGACGGATCGGAACGCCTCAATCCCGACGAGGTC
GTGCTGACGCGCAAGCGCATGGTCGCGAACGGCGTACCGGACGCCGACAA
GATGTCGGACGAGGACATTCAGGCGGTGTTCGCCGAGCGCGCCCGCAGCT
TCCTCGAGGATGCGCCGACAACGGCGGCGCAGGCTGCAACAATCATCCTC
GACGGCGTGAAGGCCGAGCGCTGGCGCATTCTCGTGGGCGAGGATGCGAG
GCGCCTCGACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57091:1..513+

>mRNA_P-wetherbeei_contig57091.1.1 ID=mRNA_P-wetherbeei_contig57091.1.1|Name=mRNA_P-wetherbeei_contig57091.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig57091:1..513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGTGGCCGCCGACGAGGCGCACATCGTCAACACCGCAAGCGTCAA
CGGCTTCTGGGCCTCGATCGGCATGGGACAGGCGCACACCGCCTACAGCT
CGGCCAAGTTCGCGGTGAAAGGATTTACCGAAGCGCTCATCAACGACCTT
CGGCTGCACGCGCCGCATGTCAAATGCTCGGTGGTGATGCCCGGTCATAT
CGGCACCTCGATCGTCTCTAACTCGCGCAAGGTGCAGAGCACCGACGGAT
CGGAACGCCTCAATCCCGACGAGGTCGTGCTGACGCGCAAGCGCATGGTC
GCGAACGGCGTACCGGACGCCGACAAGATGTCGGACGAGGACATTCAGGC
GGTGTTCGCCGAGCGCGCCCGCAGCTTCCTCGAGGATGCGCCGACAACGG
CGGCGCAGGCTGCAACAATCATCCTCGACGGCGTGAAGGCCGAGCGCTGG
CGCATTCTCGTGGGCGAGGATGCGAGGCGCCTCGACGAG
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