mRNA_P-wetherbeei_contig57070.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57070.1.1
Unique NamemRNA_P-wetherbeei_contig57070.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A7V5JGT4_9GAMM (Thymidylate kinase n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7V5JGT4_9GAMM)

HSP 1 Score: 191 bits (484), Expect = 7.540e-59
Identity = 98/159 (61.64%), Postives = 118/159 (74.21%), Query Frame = 1 
Query:    1 MNRAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            M R  FIT+EG EGVGKT+ +E V A +R+ G+ +  TREPGGT LGER+R L+L+     +AP  ELL+MFAARAQHLE+RIRPALARG  V+CDRFTDATYAYQG GRGLP+ HI+   ++V   L P LT++LD PP  GL RA ARS  DRFE E
Sbjct:    1 MKRGCFITIEGGEGVGKTTNMEFVAALIRSAGKTLVCTREPGGTPLGERLRELLLDPRYRGMAPDCELLMMFAARAQHLEERIRPALARGEWVLCDRFTDATYAYQGYGRGLPLAHIETLERMVQQGLQPDLTLILDLPPARGLARAEARSTPDRFERE 159
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A7V5UAY5_9GAMM (Thymidylate kinase n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V5UAY5_9GAMM)

HSP 1 Score: 183 bits (464), Expect = 8.680e-56
Identity = 95/159 (59.75%), Postives = 114/159 (71.70%), Query Frame = 1 
Query:    1 MNRAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            M+R  FIT+EG+EGVGK++ +E +V  LRA G  V  TREPGGTELGE IRAL+L     A+ P  ELLLMFAAR++HL +RI PAL  G  VVCDRFTDA+YAYQG GRG+P+  I+   +    D  P  T+LLDAPP+VGL RARAR   DRFE E
Sbjct:    1 MSRGCFITVEGVEGVGKSTQIEALVERLRAHGHRVVLTREPGGTELGEAIRALLLSDRYPAMHPDTELLLMFAARSEHLHRRILPALEAGEWVVCDRFTDASYAYQGGGRGMPLARIEALERWTLGDFRPDATLLLDAPPEVGLARARARGPQDRFEQE 159
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A3B9AGG2_9GAMM (Thymidylate kinase n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A3B9AGG2_9GAMM)

HSP 1 Score: 182 bits (462), Expect = 1.540e-55
Identity = 92/154 (59.74%), Postives = 112/154 (72.73%), Query Frame = 1 
Query:   16 FITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            FITLEG EGVGK++ +  +  WL+ +G +  +TREPGGT LGE +R L+L H  + +APL ELLL+FAARAQHL ++IRP LA G  V+CDRFTDAT+AYQGAGRGL    I    +LVH DL P LTILLD  P+VGL+RA  R   DRFE E
Sbjct:    5 FITLEGTEGVGKSTCIAVIEDWLKGRGVQFVSTREPGGTSLGEELRELLLAHRAIDMAPLTELLLVFAARAQHLAEKIRPTLASGAWVLCDRFTDATFAYQGAGRGLDEGSILTLAKLVHDDLAPDLTILLDVDPEVGLKRAGRRGGLDRFERE 158
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A3M1URF8_9GAMM (Thymidylate kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1URF8_9GAMM)

HSP 1 Score: 182 bits (461), Expect = 2.330e-55
Identity = 94/159 (59.12%), Postives = 114/159 (71.70%), Query Frame = 1 
Query:    1 MNRAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            M R  FIT+EG EGVGKT+++  +  ++RA+G  V  TREPGGT LGE +R L+L+     + P  ELLLMFAARAQHL +RIRPALARG  V+CDRFTDATYAYQG GRGLP+  I+   ++V   L P LT++LD PP  GL RA  RSA DRFE E
Sbjct:    1 MRRGRFITVEGGEGVGKTTSLAFIAEYIRARGHRVVCTREPGGTPLGEALRGLLLDPRYQGMDPECELLLMFAARAQHLSERIRPALARGEWVLCDRFTDATYAYQGYGRGLPLAQIEALERMVQQGLQPDLTLVLDMPPAEGLERAGKRSAPDRFEQE 159
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: UPI001C986398 (dTMP kinase n=1 Tax=Marinobacterium sp. CAU 1594 TaxID=2862496 RepID=UPI001C986398)

HSP 1 Score: 181 bits (459), Expect = 5.290e-55
Identity = 97/154 (62.99%), Postives = 111/154 (72.08%), Query Frame = 1 
Query:   16 FITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            FIT+EGIEGVGKT+ +E V  WL  +G EV  TREPGGT L E +RAL+L   D  ++   ELLLMFAARAQHL Q I+PAL RG  V+CDRFTDATYAYQG GRGL  T I+   QLV   L P LT+LLD P +VGL+RA  RSA DRFE E
Sbjct:    9 FITIEGIEGVGKTTNIEFVRQWLAERGIEVIMTREPGGTPLAEELRALLLSPRDEEVSHDTELLLMFAARAQHLNQVIKPALQRGAWVLCDRFTDATYAYQGGGRGLDTTPIETLEQLVQQGLNPDLTLLLDLPVEVGLQRANQRSAPDRFEQE 162
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A7Y2YXE6_9GAMM (Thymidylate kinase n=2 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2YXE6_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 6.230e-55
Identity = 95/159 (59.75%), Postives = 118/159 (74.21%), Query Frame = 1 
Query:    1 MNRAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            M R  FIT+EG EG GK++ +  +  WL++ G  V  TREPGGT L E++R ++L++++LA++  AELLLMFAARAQHLE+ IRPALARG  V+CDRFTDAT+AYQG GR LP   I     LVH DL P LT+LLD P + GL+RA ARSAADRFE E
Sbjct:    1 MKRGKFITVEGGEGAGKSTMMVRLEEWLKSAGHRVVCTREPGGTVLAEKLRDILLDNNNLALSGQAELLLMFAARAQHLEELIRPALARGDWVLCDRFTDATWAYQGGGRRLPDGDIATLETLVHDDLQPDLTLLLDLPVEQGLQRASARSAADRFEQE 159
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A1Y5FZ90_9GAMM (Thymidylate kinase n=1 Tax=Gammaproteobacteria bacterium 50_400_T64 TaxID=1856294 RepID=A0A1Y5FZ90_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 6.630e-55
Identity = 90/157 (57.32%), Postives = 114/157 (72.61%), Query Frame = 1 
Query:    7 RAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            +  FIT+EG EGVGKT+ ++C+ +WL  +G    +TREPGGT LGE+IR L+L+  +  +A  AELLLMFAARAQHLE++I PAL  G  V+CDRFTDATYAYQG GRGL + HI R   LV  DL P  T++LD  P++G+ R RAR   DRFE+E
Sbjct:    2 KGKFITVEGTEGVGKTTNIQCIASWLDERGIAYISTREPGGTALGEKIRGLLLDKENTGMAASAELLLMFAARAQHLEEKIIPALEVGTWVLCDRFTDATYAYQGFGRGLNLEHIKRLEALVQGDLHPDFTLILDIDPELGMSRVRARGELDRFESE 158
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A6N7QQ80_9GAMM (Thymidylate kinase n=1 Tax=Spiribacter sp. C176 TaxID=2664894 RepID=A0A6N7QQ80_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 7.050e-55
Identity = 96/158 (60.76%), Postives = 113/158 (71.52%), Query Frame = 1 
Query:    7 RAAFITLEGIEGVGKTSAVECVVAWLRAQ-GREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            R  FIT+EG+EG GKTSAV  +V W+  Q G +V ATREPGGT LGE +RA++L H +  ++  AELLLMFAARA+HLE+ IRPALA G  VVCDRFTDA++AYQG GRGL    ID   Q  H DL P LT+ LD P  VGL RA  RS  DRFE+E
Sbjct:    4 RNRFITVEGVEGAGKTSAVASIVNWIETQQGGQVVATREPGGTSLGEDLRAILLSHREEGMSSDAELLLMFAARAEHLERVIRPALAAGQWVVCDRFTDASFAYQGGGRGLDKDRIDALAQWTHPDLAPGLTLWLDVPVAVGLARAAGRSTPDRFESE 161
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A2A4LWP0_9GAMM (Thymidylate kinase n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A4LWP0_9GAMM)

HSP 1 Score: 180 bits (457), Expect = 9.120e-55
Identity = 89/157 (56.69%), Postives = 110/157 (70.06%), Query Frame = 1 
Query:    7 RAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            +  FITLEG EGVGK++ + C+  WL  +     +TREPGGTELGE IRAL+L H D ++  + ELLLMFAARAQHL ++I PAL+ GV V+CDRFTDAT+AYQG GRG+    I    +LVH DL P LT++LD  P +GL R   R   DRFETE
Sbjct:    2 KGKFITLEGTEGVGKSTNIACIEEWLARRAINYISTREPGGTELGEEIRALLLNHRDQSVDVMTELLLMFAARAQHLSEKILPALSSGVWVLCDRFTDATFAYQGGGRGIDTALIQTLAELVHRDLQPDLTLVLDIDPKIGLSRIEQRGERDRFETE 158
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BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Match: A0A1F6T7L7_9PROT (Thymidylate kinase n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_64_10 TaxID=1817757 RepID=A0A1F6T7L7_9PROT)

HSP 1 Score: 179 bits (455), Expect = 1.830e-54
Identity = 96/159 (60.38%), Postives = 107/159 (67.30%), Query Frame = 1 
Query:    1 MNRAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERIRALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTDATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARARSAADRFETE 477
            M R  FITLEG EG GK++A+  V  WLR  G EV  TREPGGTELGER+R L+L   +L +    E LLMFAARA+HL Q IRPALA G  V+CDRFTDATYAYQG GRGLP   I      V   L P LT+LLD P + GL RA  RSA DRFE E
Sbjct:    1 MKRGYFITLEGGEGAGKSTALPFVRDWLRQAGHEVVVTREPGGTELGERVRELLLHRRELHMCTETETLLMFAARAEHLAQVIRPALAAGKTVLCDRFTDATYAYQGGGRGLPAARIAELESWVQGALRPDLTLLLDVPVETGLMRANQRSAPDRFERE 159
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V5JGT4_9GAMM7.540e-5961.64Thymidylate kinase n=1 Tax=Thiotrichales bacterium... [more]
A0A7V5UAY5_9GAMM8.680e-5659.75Thymidylate kinase n=1 Tax=Chromatiales bacterium ... [more]
A0A3B9AGG2_9GAMM1.540e-5559.74Thymidylate kinase n=1 Tax=Porticoccaceae bacteriu... [more]
A0A3M1URF8_9GAMM2.330e-5559.12Thymidylate kinase n=1 Tax=Gammaproteobacteria bac... [more]
UPI001C9863985.290e-5562.99dTMP kinase n=1 Tax=Marinobacterium sp. CAU 1594 T... [more]
A0A7Y2YXE6_9GAMM6.230e-5559.75Thymidylate kinase n=2 Tax=Xanthomonadales bacteri... [more]
A0A1Y5FZ90_9GAMM6.630e-5557.32Thymidylate kinase n=1 Tax=Gammaproteobacteria bac... [more]
A0A6N7QQ80_9GAMM7.050e-5560.76Thymidylate kinase n=1 Tax=Spiribacter sp. C176 Ta... [more]
A0A2A4LWP0_9GAMM9.120e-5556.69Thymidylate kinase n=1 Tax=Cellvibrionales bacteri... [more]
A0A1F6T7L7_9PROT1.830e-5460.38Thymidylate kinase n=1 Tax=Candidatus Muproteobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57070contigP-wetherbeei_contig57070:3..479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1042375.AFPL01000034_gene3117
Preferred nametmk
PFAMsThymidylate_kin
Model size477
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0015949,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons1
Evalue7.67e-56
EggNOG OGsCOG0125@1|root,COG0125@2|Bacteria,1MV9C@1224|Proteobacteria,1S26C@1236|Gammaproteobacteria,466N6@72275|Alteromonadaceae
EC2.7.4.9
DescriptionPhosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Cds size477
COG categoryF
BiGG ReactioniECABU_c1320.ECABU_c13120,ic_1306.c1370
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.107554-CDS-P-wetherbeei_contig57070:2..4791683186847.107554-CDS-P-wetherbeei_contig57070:2..479Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57070 3..479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57070.1.1prot_P-wetherbeei_contig57070.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57070 3..479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57070.1.1

>prot_P-wetherbeei_contig57070.1.1 ID=prot_P-wetherbeei_contig57070.1.1|Name=mRNA_P-wetherbeei_contig57070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MNRAAFITLEGIEGVGKTSAVECVVAWLRAQGREVTATREPGGTELGERI
RALVLEHHDLAIAPLAELLLMFAARAQHLEQRIRPALARGVAVVCDRFTD
ATYAYQGAGRGLPVTHIDRAVQLVHSDLMPTLTILLDAPPDVGLRRARAR
SAADRFETE
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mRNA from alignment at P-wetherbeei_contig57070:3..479-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57070.1.1 ID=mRNA_P-wetherbeei_contig57070.1.1|Name=mRNA_P-wetherbeei_contig57070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig57070:3..479- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATCGCGCCGCATTCATTACCCTTGAAGGCATCGAGGGCGTCGGCAA
AACCAGCGCGGTCGAATGCGTAGTCGCCTGGTTGCGCGCGCAGGGTCGTG
AGGTCACCGCCACCCGCGAGCCCGGCGGTACCGAGCTCGGCGAACGCATT
CGCGCTCTGGTGCTGGAACACCATGACCTTGCCATTGCGCCACTTGCCGA
ACTACTGTTGATGTTCGCCGCCCGCGCTCAACATCTCGAACAACGCATAC
GCCCGGCGCTGGCGCGCGGCGTAGCGGTGGTCTGTGATCGCTTTACTGAC
GCCACTTATGCCTATCAGGGCGCTGGCCGCGGTCTGCCCGTCACGCATAT
CGACCGCGCCGTGCAGCTGGTGCACAGCGATCTCATGCCGACCCTGACCA
TCCTGCTCGACGCGCCACCCGACGTGGGCCTGCGCCGCGCCCGCGCGCGC
AGCGCTGCAGATCGGTTCGAGACTGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57070:3..479-

>mRNA_P-wetherbeei_contig57070.1.1 ID=mRNA_P-wetherbeei_contig57070.1.1|Name=mRNA_P-wetherbeei_contig57070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig57070:3..479- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATCGCGCCGCATTCATTACCCTTGAAGGCATCGAGGGCGTCGGCAA
AACCAGCGCGGTCGAATGCGTAGTCGCCTGGTTGCGCGCGCAGGGTCGTG
AGGTCACCGCCACCCGCGAGCCCGGCGGTACCGAGCTCGGCGAACGCATT
CGCGCTCTGGTGCTGGAACACCATGACCTTGCCATTGCGCCACTTGCCGA
ACTACTGTTGATGTTCGCCGCCCGCGCTCAACATCTCGAACAACGCATAC
GCCCGGCGCTGGCGCGCGGCGTAGCGGTGGTCTGTGATCGCTTTACTGAC
GCCACTTATGCCTATCAGGGCGCTGGCCGCGGTCTGCCCGTCACGCATAT
CGACCGCGCCGTGCAGCTGGTGCACAGCGATCTCATGCCGACCCTGACCA
TCCTGCTCGACGCGCCACCCGACGTGGGCCTGCGCCGCGCCCGCGCGCGC
AGCGCTGCAGATCGGTTCGAGACTGAA
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