mRNA_P-wetherbeei_contig57065.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57065.1.1
Unique NamemRNA_P-wetherbeei_contig57065.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57065.1.1 vs. uniprot
Match: UPI001EF99A35 (hypothetical protein n=1 Tax=Bradyrhizobium sp. I71 TaxID=2590772 RepID=UPI001EF99A35)

HSP 1 Score: 78.6 bits (192), Expect = 9.370e-17
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 MNGHRLSGRYYALQTVNQSEWAENEGRQTVGNAVAREESAAKGVVSLPICSPVLVYERLIS 183
            ++G RLSGRY ALQTV+QSE A NE R+T GNA AR ES+ KG  SL ICSP +VY RLIS
Sbjct:   31 ISGDRLSGRYCALQTVDQSERAANEQRKTAGNAAARAESSGKGAFSLRICSPAMVYGRLIS 91
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BLAST of mRNA_P-wetherbeei_contig57065.1.1 vs. uniprot
Match: UPI0013750E5B (hypothetical protein n=1 Tax=Bradyrhizobium nitroreducens TaxID=709803 RepID=UPI0013750E5B)

HSP 1 Score: 58.9 bits (141), Expect = 3.140e-10
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MNGHRLSGRYYALQTVNQSEWAENEGRQTVGNAVAREESAAKG 129
            MNGHRLSGRY ALQT+NQSE A N+ RQT GN  AR++S   G
Sbjct:    1 MNGHRLSGRYCALQTLNQSERAANDLRQTAGNTAARDDSPTNG 43
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BLAST of mRNA_P-wetherbeei_contig57065.1.1 vs. uniprot
Match: UPI0013026719 (hypothetical protein n=2 Tax=Bradyrhizobium canariense TaxID=255045 RepID=UPI0013026719)

HSP 1 Score: 52.8 bits (125), Expect = 8.570e-8
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 MNGHRLSGRYYALQTVNQSEWAENEGRQTVGNAVAREESAAKGVVS 138
            M G RLSGRY ALQTV+QSE A N+ RQ+V NA AR+ES+  G  S
Sbjct:    1 MTGDRLSGRYCALQTVDQSERAANDLRQSVENATARDESSPDGPAS 46
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BLAST of mRNA_P-wetherbeei_contig57065.1.1 vs. uniprot
Match: UPI001FF99F6A (hypothetical protein n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001FF99F6A)

HSP 1 Score: 51.6 bits (122), Expect = 5.020e-7
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    1 MNGHRLSGRYYALQTVNQSEWAENEGRQTVGNAVAREESAAKG 129
            M G RLSGRY ALQT++QSE A N+ RQ+V NA AR+ES+  G
Sbjct:   32 MTGDRLSGRYCALQTIDQSERAANDLRQSVENATARDESSPDG 74
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57065.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI001EF99A359.370e-1767.21hypothetical protein n=1 Tax=Bradyrhizobium sp. I7... [more]
UPI0013750E5B3.140e-1067.44hypothetical protein n=1 Tax=Bradyrhizobium nitror... [more]
UPI00130267198.570e-863.04hypothetical protein n=2 Tax=Bradyrhizobium canari... [more]
UPI001FF99F6A5.020e-762.79hypothetical protein n=2 Tax=unclassified Bradyrhi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57065contigP-wetherbeei_contig57065:312..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size194
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186847.0003226-CDS-P-wetherbeei_contig57065:311..5031683186847.0003226-CDS-P-wetherbeei_contig57065:311..503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57065 312..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57065.1.1prot_P-wetherbeei_contig57065.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57065 312..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57065.1.1

>prot_P-wetherbeei_contig57065.1.1 ID=prot_P-wetherbeei_contig57065.1.1|Name=mRNA_P-wetherbeei_contig57065.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MNGHRLSGRYYALQTVNQSEWAENEGRQTVGNAVAREESAAKGVVSLPIC
SPVLVYERLISQPG
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mRNA from alignment at P-wetherbeei_contig57065:312..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57065.1.1 ID=mRNA_P-wetherbeei_contig57065.1.1|Name=mRNA_P-wetherbeei_contig57065.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig57065:312..503- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGGTCATCGCCTAAGCGGTCGTTATTACGCGCTGCAAACCGTCAA
TCAGAGTGAATGGGCTGAAAACGAGGGGCGACAAACTGTCGGGAATGCCG
TCGCACGGGAGGAATCCGCGGCGAAAGGCGTTGTCTCTTTACCAATTTGC
AGCCCTGTATTGGTTTACGAGAGATTGATATCGCAGCCGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57065:312..503-

>mRNA_P-wetherbeei_contig57065.1.1 ID=mRNA_P-wetherbeei_contig57065.1.1|Name=mRNA_P-wetherbeei_contig57065.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig57065:312..503- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATGGTCATCGCCTAAGCGGTCGTTATTACGCGCTGCAAACCGTCAA
TCAGAGTGAATGGGCTGAAAACGAGGGGCGACAAACTGTCGGGAATGCCG
TCGCACGGGAGGAATCCGCGGCGAAAGGCGTTGTCTCTTTACCAATTTGC
AGCCCTGTATTGGTTTACGAGAGATTGATATCGCAGCCGGGC
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