mRNA_P-wetherbeei_contig57059.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57059.1.1
Unique NamemRNA_P-wetherbeei_contig57059.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A7K0VJR2_9ACTN (Toprim domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K0VJR2_9ACTN)

HSP 1 Score: 197 bits (500), Expect = 1.190e-58
Identity = 103/162 (63.58%), Postives = 129/162 (79.63%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            PD NVR LYAGQVA+H GLPV  LVR+A+Q   +P++ VAP R +G +EN EFVAV+LLLQRWD IAPWL E LF+ ++ RRAF A+A A GVLDAALELADP+ARE+LERAAVADLDADP +EA +L++AAVRR+L   +R+TD  E   D++AR++L  L
Sbjct:  232 PDLNVRKLYAGQVASHTGLPVIDLVRVAEQPKRKPTLNVAPARTVGAAENGEFVAVSLLLQRWDGIAPWLTEELFAADVHRRAFAAVAAAAGVLDAALELADPEAREILERAAVADLDADPEIEAFNLIAAAVRRKLGTRLRITDHDEIRADSEARKQLDNL 393          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A6I3F5V3_9ACTN (DNA primase n=2 Tax=root TaxID=1 RepID=A0A6I3F5V3_9ACTN)

HSP 1 Score: 197 bits (501), Expect = 2.640e-57
Identity = 99/162 (61.11%), Postives = 132/162 (81.48%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            P+A VR LYAGQVA HVG+P   LV IA++R   PS++VAP RR+G +ENAEFVA+A+LLQRWDDIAPW++E LF+DE++RRAFLA+A+A G ++AALELADP+ARELLERA+VAD+DADP +EAR+L++AA RR L  +V++T+  +     DAR  L ++
Sbjct:  400 PNAEVRKLYAGQVATHVGIPAGDLVAIAERRTRAPSIKVAPLRRVGAAENAEFVALAMLLQRWDDIAPWMLEDLFADEIARRAFLAVAEAGGAVEAALELADPEARELLERASVADVDADPIIEARNLIAAATRRRLTRSVQLTEPNQLLAVRDARLALEEI 561          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A3C2BA82_9ACTN (DNA primase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2BA82_9ACTN)

HSP 1 Score: 192 bits (487), Expect = 2.700e-55
Identity = 100/162 (61.73%), Postives = 125/162 (77.16%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            P+ +VR +YAGQVA HVGLPV  LV++A++    P++RVAP RR+G  ENAEFVAV +LLQRWDDIAPWLVE LF+D+++RRAFLA+A+A+G ++AALELADP+ARE LERAAVADLD DP VEAR+L++AA RR LA      D  E     DAR  L  +
Sbjct:  395 PNQDVRKIYAGQVATHVGLPVADLVKVAERGVRAPTIRVAPARRVGAKENAEFVAVVMLLQRWDDIAPWLVEDLFADDVARRAFLAVAEANGAVEAALELADPEAREFLERAAVADLDVDPVVEARNLIAAATRRRLAQRRSSVDIEELRAMRDARLALEAI 556          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A7K1B5T6_9ACTN (DNA primase n=2 Tax=root TaxID=1 RepID=A0A7K1B5T6_9ACTN)

HSP 1 Score: 180 bits (456), Expect = 8.760e-51
Identity = 100/162 (61.73%), Postives = 122/162 (75.31%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            P+ +VR LYAG+VA  VG+PV  LV +A  R  +  VR AP R++G SENAEFVAVALLLQRW+DIA WL+E LF D+++RRAFLALADA G L AAL  ADP+ARE+LERAAV DLDADP VEA +L++AA RRELA + R+ D     E  +ARR+L  L
Sbjct:  395 PNVDVRKLYAGEVATRVGMPVNDLVAVAV-RGGKAVVRTAPARQVGVSENAEFVAVALLLQRWNDIADWLIEALFHDDVARRAFLALADAGGALTAALTDADPEAREMLERAAVVDLDADPFVEACNLIAAATRRELARSTRLVDPEAMREATEARRQLEFL 555          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A539E920_9ACTN (DNA primase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E920_9ACTN)

HSP 1 Score: 178 bits (452), Expect = 3.340e-50
Identity = 97/162 (59.88%), Postives = 123/162 (75.93%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            P  +VR LYAGQVA  VGLPV  LV +A +   R  VRVAPTR++G SENAEFVAVA+LLQ+W+D+A WL+E LF+D+++RRAF+ALA  +GVL+ AL+ ADP+ARE+LERAAVAD DA+P  EA +L++AAVRREL   V +TD      D +ARR L  L
Sbjct:  395 PSVDVRKLYAGQVATKVGLPVNDLVAVAAK-GGRAYVRVAPTRQVGLSENAEFVAVAMLLQQWNDVAAWLIEALFADDVARRAFVALAAGNGVLNTALDTADPEAREMLERAAVADFDAEPLAEACNLIAAAVRRELGRRVHVTDPDVIRADTEARRSLELL 555          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A6J6VKR9_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6VKR9_9ZZZZ)

HSP 1 Score: 176 bits (445), Expect = 3.890e-50
Identity = 92/162 (56.79%), Postives = 123/162 (75.93%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            PD NVR LYAG+VA+HVG+P   L+ +A++ + +P V VA   R    ENAEFVA+ALL+Q+WDDIAPW+VE LF D++ RRAFLALA+  GV++ ALE ADP+ARE +ERAAVAD+D++P +EA +L+SAAVRREL   V+++D  +   D DAR  L +L
Sbjct:  269 PDKNVRKLYAGEVASHVGIPAADLMTLAERGSRKPVVAVAAPARSTRRENAEFVAIALLIQQWDDIAPWMVEALFQDDVYRRAFLALAETQGVVNTALESADPEAREAIERAAVADVDSEPMLEALNLISAAVRRELTARVKISDPEQIRLDRDARLLLERL 430          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A2G6K6R2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A2G6K6R2_9ACTN)

HSP 1 Score: 168 bits (425), Expect = 7.220e-50
Identity = 89/163 (54.60%), Postives = 119/163 (73.01%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVA-PTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            P+ N+R LYAG+VA  +GLPV  +VR+A+Q + RP V    P RR    +NAEFVA+ALL+ RW+DIAPWL+E LFSD++ RRAFLA+A++ G +  A+  +DPDAR+LLERAAV D+DADP  EAR+L+SAAVRREL      TD  +  +DA AR +  ++
Sbjct:   20 PNINIRKLYAGEVATRLGLPVTDMVRLAEQGSRRPRVNTPRPQRRDQPRQNAEFVALALLIHRWNDIAPWLIESLFSDDVCRRAFLAVAESGGDITVAIAESDPDARDLLERAAVVDIDADPITEARNLVSAAVRRELTTGATATDPDQIRDDAQARLKAEEM 182          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A7K1C873_9ACTN (DNA primase n=2 Tax=root TaxID=1 RepID=A0A7K1C873_9ACTN)

HSP 1 Score: 176 bits (445), Expect = 4.350e-49
Identity = 97/167 (58.08%), Postives = 119/167 (71.26%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAH-----GVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            PD NVR LYAG+VA  VGLPV  L R+A++RN RP VRV+ TR +G +ENAEFVA+ LLLQ WD+IAPWL+E LF  E+ RRAFLALA+A       ++DAAL +ADP+ RELLERAAVAD+D D    A +L+  AVRR L+    +TD  E   D DAR RL +L
Sbjct:  398 PDVNVRKLYAGEVATRVGLPVADLSRLAERRNERPEVRVSSTREVGVAENAEFVAITLLLQTWDEIAPWLIEELFDAEVPRRAFLALAEASQSQSANLVDAALAIADPEVRELLERAAVADVDVDAMSVAFNLIGVAVRRVLSRRTGITDPDEIRADRDARIRLEEL 564          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A6L6D6R8_9ACTN (DNA primase n=3 Tax=root TaxID=1 RepID=A0A6L6D6R8_9ACTN)

HSP 1 Score: 176 bits (445), Expect = 4.350e-49
Identity = 92/162 (56.79%), Postives = 123/162 (75.93%), Query Frame = 1
Query:    1 PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENPEDADARRRLHQL 486
            PD NVR LYAG+VA+HVG+P   L+ +A++ + +P V VA   R    ENAEFVA+ALL+Q+WDDIAPW+VE LF D++ RRAFLALA+  GV++ ALE ADP+ARE +ERAAVAD+D++P +EA +L+SAAVRREL   V+++D  +   D DAR  L +L
Sbjct:  410 PDKNVRKLYAGEVASHVGIPAADLMTLAERGSRKPVVAVAAPARSTRRENAEFVAIALLIQQWDDIAPWMVEALFQDDVYRRAFLALAETQGVVNTALESADPEAREAIERAAVADVDSEPMLEALNLISAAVRRELTARVKISDPEQIRLDRDARLLLERL 571          
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Match: A0A3C1LAL7_9ACTN (DNA primase n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1LAL7_9ACTN)

HSP 1 Score: 174 bits (442), Expect = 9.680e-49
Identity = 87/138 (63.04%), Postives = 112/138 (81.16%), Query Frame = 1
Query:   10 NVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSENAEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALELADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNV 423
             VR LYAGQVA HVG+P   LV +A +R   P+V +AP RRIG +ENAEFV +A+LLQRWDDIAPWL+E LF++E++RRAFLA+A++ G ++ AL+ ADP+ARE LERAAVAD+DADP +EAR+L++AA RR LA  V
Sbjct:  399 EVRKLYAGQVATHVGIPPADLVALAARRVKAPTVHIAPVRRIGAAENAEFVCIAMLLQRWDDIAPWLMEELFAEEVARRAFLAVAESGGAIEPALDRADPEAREFLERAAVADVDADPVLEARNLIAAATRRRLAQMV 536          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57059.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K0VJR2_9ACTN1.190e-5863.58Toprim domain-containing protein n=2 Tax=root TaxI... [more]
A0A6I3F5V3_9ACTN2.640e-5761.11DNA primase n=2 Tax=root TaxID=1 RepID=A0A6I3F5V3_... [more]
A0A3C2BA82_9ACTN2.700e-5561.73DNA primase n=1 Tax=Acidimicrobiaceae bacterium Ta... [more]
A0A7K1B5T6_9ACTN8.760e-5161.73DNA primase n=2 Tax=root TaxID=1 RepID=A0A7K1B5T6_... [more]
A0A539E920_9ACTN3.340e-5059.88DNA primase n=1 Tax=Acidimicrobiaceae bacterium Ta... [more]
A0A6J6VKR9_9ZZZZ3.890e-5056.79Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A2G6K6R2_9ACTN7.220e-5054.60Uncharacterized protein (Fragment) n=1 Tax=Ilumato... [more]
A0A7K1C873_9ACTN4.350e-4958.08DNA primase n=2 Tax=root TaxID=1 RepID=A0A7K1C873_... [more]
A0A6L6D6R8_9ACTN4.350e-4956.79DNA primase n=3 Tax=root TaxID=1 RepID=A0A6L6D6R8_... [more]
A0A3C1LAL7_9ACTN9.680e-4963.04DNA primase n=3 Tax=Actinobacteria TaxID=201174 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57059contigP-wetherbeei_contig57059:27..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1313172.YM304_22780
Preferred namednaG
PFAMsDnaB_bind,Toprim_4,Toprim_N,zf-CHC2
Model size486
Max annot lvl84992|Acidimicrobiia
KEGG koko:K02316
KEGG Pathwayko03030,map03030
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.95e-44
EggNOG OGsCOG0358@1|root,COG0358@2|Bacteria,2GJFX@201174|Actinobacteria,4CMWH@84992|Acidimicrobiia
DescriptionRNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication
Cds size486
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.8699224-CDS-P-wetherbeei_contig57059:26..5121683186846.8699224-CDS-P-wetherbeei_contig57059:26..512Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57059 27..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57059.1.1prot_P-wetherbeei_contig57059.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57059 27..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57059.1.1

>prot_P-wetherbeei_contig57059.1.1 ID=prot_P-wetherbeei_contig57059.1.1|Name=mRNA_P-wetherbeei_contig57059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
PDANVRTLYAGQVAAHVGLPVEQLVRIAQQRNTRPSVRVAPTRRIGTSEN
AEFVAVALLLQRWDDIAPWLVEPLFSDELSRRAFLALADAHGVLDAALEL
ADPDARELLERAAVADLDADPTVEARSLLSAAVRRELAHNVRMTDGAENP
EDADARRRLHQL
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mRNA from alignment at P-wetherbeei_contig57059:27..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57059.1.1 ID=mRNA_P-wetherbeei_contig57059.1.1|Name=mRNA_P-wetherbeei_contig57059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig57059:27..512- (Phaeothamnion wetherbeei SAG_119_79)
CCCGACGCCAACGTGCGCACGCTGTACGCCGGTCAGGTCGCCGCGCACGT CGGGCTGCCCGTCGAGCAGCTGGTGCGCATCGCCCAGCAGCGCAACACGC GCCCCTCGGTGCGCGTCGCCCCGACTCGTCGCATCGGCACGTCGGAGAAC GCCGAGTTCGTCGCCGTCGCGTTGTTGTTGCAGCGCTGGGACGACATCGC TCCGTGGCTCGTGGAGCCGTTGTTCTCCGACGAACTGTCGCGTCGCGCCT TCCTTGCGCTGGCCGACGCGCACGGTGTGCTCGACGCTGCGCTCGAGCTG GCCGACCCCGATGCGCGTGAGCTGCTGGAGCGTGCAGCCGTGGCCGACCT CGATGCCGATCCCACCGTCGAGGCGCGCAGTCTGCTGTCTGCCGCGGTGC GTCGCGAGCTCGCTCACAACGTGCGAATGACCGACGGCGCGGAGAACCCG GAGGACGCCGACGCACGTCGTCGGCTGCACCAGTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57059:27..512-

>mRNA_P-wetherbeei_contig57059.1.1 ID=mRNA_P-wetherbeei_contig57059.1.1|Name=mRNA_P-wetherbeei_contig57059.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig57059:27..512- (Phaeothamnion wetherbeei SAG_119_79)
CCCGACGCCAACGTGCGCACGCTGTACGCCGGTCAGGTCGCCGCGCACGT
CGGGCTGCCCGTCGAGCAGCTGGTGCGCATCGCCCAGCAGCGCAACACGC
GCCCCTCGGTGCGCGTCGCCCCGACTCGTCGCATCGGCACGTCGGAGAAC
GCCGAGTTCGTCGCCGTCGCGTTGTTGTTGCAGCGCTGGGACGACATCGC
TCCGTGGCTCGTGGAGCCGTTGTTCTCCGACGAACTGTCGCGTCGCGCCT
TCCTTGCGCTGGCCGACGCGCACGGTGTGCTCGACGCTGCGCTCGAGCTG
GCCGACCCCGATGCGCGTGAGCTGCTGGAGCGTGCAGCCGTGGCCGACCT
CGATGCCGATCCCACCGTCGAGGCGCGCAGTCTGCTGTCTGCCGCGGTGC
GTCGCGAGCTCGCTCACAACGTGCGAATGACCGACGGCGCGGAGAACCCG
GAGGACGCCGACGCACGTCGTCGGCTGCACCAGTTG
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