mRNA_P-wetherbeei_contig57034.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57034.1.1
Unique NamemRNA_P-wetherbeei_contig57034.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A3N9UWV0_9EURY (Uncharacterized protein n=1 Tax=Methanothrix sp. TaxID=90426 RepID=A0A3N9UWV0_9EURY)

HSP 1 Score: 66.2 bits (160), Expect = 3.930e-11
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 MDPFAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDI----RQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADGI 237
            MDPF + V++WHD + L GTAA TL+GL+FVA+SL  D+    ++ +D   L R T  N   F+ +   +  FM+P  +  GI
Sbjct:    1 MDPFIETVESWHDFYMLAGTAAATLIGLIFVAVSLHIDVIATAKKSSDISVLARQTFSN---FIFILSFAFIFMVPSDTPFGI 80          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A1V4V6H1_9EURY (Uncharacterized protein n=2 Tax=unclassified Methanothrix TaxID=2620051 RepID=A0A1V4V6H1_9EURY)

HSP 1 Score: 64.7 bits (156), Expect = 1.490e-10
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   10 FAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDD-IRQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADG 234
            FA  +++WHD + L G+AA TLLGLLFVA+SL  D I    +++ L   + Q L +F+++ L+++ FMIPE S  G
Sbjct:   15 FAAVIESWHDFYMLAGSAAFTLLGLLFVAVSLNIDLIAAPRNSEDLTVFSLQTLMNFLSILLIALVFMIPEQSEYG 90          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A7W0TX47_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TX47_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 1.690e-9
Identity = 27/80 (33.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   10 FAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDIRQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADGIALSI 249
            F + +  WHD + L GTAA TL+GLLFVA+SLR ++        L+    Q +++ + + ++S+F ++P+     +A+S+
Sbjct:   12 FGEQLKPWHDFYALAGTAAATLMGLLFVALSLRPEVMTDGGPVGLRAWAGQTMSNLIALLIISLFCLMPDLDYPTLAISL 91          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A2W6AK42_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W6AK42_9CHLR)

HSP 1 Score: 57.0 bits (136), Expect = 2.060e-8
Identity = 28/94 (29.79%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   10 FAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDIRQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADGIALSIVATVAAPLVNSLRS 291
            F+  + +W   + L G+A+ TL+GLLFVA+SL  D+  ++    +  M  +    F+ V L+++ F++P  +  G+ L +   +A  +V++LR+
Sbjct:    5 FSSTIASWQSFYVLAGSASATLIGLLFVAVSLHIDLIGESGAAVILSMARRTFIRFILVVLVALLFLVPHQNPQGLGLPL---LALGVVDALRT 95          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A5E4J543_9ARCH (Uncharacterized protein n=1 Tax=uncultured archaeon TaxID=115547 RepID=A0A5E4J543_9ARCH)

HSP 1 Score: 57.4 bits (137), Expect = 7.200e-8
Identity = 28/95 (29.47%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    1 MDPFAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDI-RQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADGIALSIVATVAAPLVNS 282
            M+ F   +DAW D + L G+A  TL+GL+FVA++L  DI  +   +  ++ +  Q  T+F+ +   +  FM+P  +  GI   ++   A  ++ +
Sbjct:    1 MNDFIDTIDAWRDFYMLTGSATATLIGLIFVAVTLHIDIIAESKKSSEIRMLAEQVFTNFLLILSFAFIFMVPSDTPYGIGFPLLILGAMEIIQT 95          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A536KD61_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536KD61_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 2.520e-7
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   10 FAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDIR-QQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASAD--GIALSIVATVA 264
            + QAV  WHD +   G AA TL+GLLFV +SL   +     D + L R+T   LT FV V L+++  + P       GIAL IVA V+
Sbjct:    3 YGQAVQGWHDFYVTAGAAAATLVGLLFVGLSLHIRVVVAHPDVRSLARVT---LTDFVVVLLVALLLLSPAGGDQTAGIALMIVAGVS 87          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A7W1S3H0_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7W1S3H0_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 3.890e-7
Identity = 26/84 (30.95%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 MDPFAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDIRQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADGIALSIV 252
            +DPF QA+  W   + ++GTA+ TL+GL+F+A+SL  D+    D   +    +  L  F +V ++S   +IP      + +++V
Sbjct:    2 IDPFVQALHDWQTFYFMMGTASATLIGLMFIAVSLGADLPAATDESGISAFVTPMLIHFGSVLMISALMLIPTFRLMSLGIAVV 85          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: A0A537UFH5_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UFH5_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 1.100e-6
Identity = 26/69 (37.68%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   10 FAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDIRQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIP 216
            FA+ VD WHD   L+GTAA TL+GL+FVA S+   +  +     ++   S  +  F TV +++V  ++P
Sbjct:    5 FAELVDNWHDFDLLIGTAAATLVGLMFVAASIGASVFTEKSRAAMQAFISPTVVHFTTVLVIAVLAVVP 73          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: I4EM69_9CHLR (Uncharacterized protein n=1 Tax=Nitrolancea hollandica Lb TaxID=1129897 RepID=I4EM69_9CHLR)

HSP 1 Score: 53.9 bits (128), Expect = 1.520e-6
Identity = 23/82 (28.05%), Postives = 45/82 (54.88%), Query Frame = 1
Query:    1 MDPFAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDIRQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADGIALS 246
            M+   QA++ WH+ +  +   + TL+GLLFV++SL   +        ++ +  Q   +F  V ++S+ F+IP  S  G+ ++
Sbjct:    1 METLGQAIEPWHEFYAAVSATSATLVGLLFVSLSLNLKLVTGEQHAEIRALAIQTFVNFTYVLIISLIFLIPNLSPSGVGIT 82          
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Match: F4BY34_METSG (Uncharacterized protein n=6 Tax=root TaxID=1 RepID=F4BY34_METSG)

HSP 1 Score: 53.9 bits (128), Expect = 1.560e-6
Identity = 27/82 (32.93%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    4 DPFAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDD----IRQQADTQYLKRMTSQNLTSFVTVFLMSVFFMIPEASADGI 237
            DPF + +D+W + F L G+ A TL+GL+FV++SL  D    +R+ +D   +  M  Q    F+ +   +  FM+P  +  G+
Sbjct:    3 DPFVETIDSWTNFFMLTGSVAATLIGLIFVSVSLHIDFIASVRKDSD---MNTMARQTFGDFLMILSFAFIFMVPFETPMGV 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57034.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N9UWV0_9EURY3.930e-1140.96Uncharacterized protein n=1 Tax=Methanothrix sp. T... [more]
A0A1V4V6H1_9EURY1.490e-1044.74Uncharacterized protein n=2 Tax=unclassified Metha... [more]
A0A7W0TX47_9CHLR1.690e-933.75Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
A0A2W6AK42_9CHLR2.060e-829.79Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A5E4J543_9ARCH7.200e-829.47Uncharacterized protein n=1 Tax=uncultured archaeo... [more]
A0A536KD61_9CHLR2.520e-742.05Uncharacterized protein n=2 Tax=Chloroflexi bacter... [more]
A0A7W1S3H0_9CHLR3.890e-730.95Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A537UFH5_9PROT1.100e-637.68Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
I4EM69_9CHLR1.520e-628.05Uncharacterized protein n=1 Tax=Nitrolancea hollan... [more]
F4BY34_METSG1.560e-632.93Uncharacterized protein n=6 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57034contigP-wetherbeei_contig57034:112..429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size318
Hectar predicted targeting categorysignal anchor
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.604051-CDS-P-wetherbeei_contig57034:111..4291683186846.604051-CDS-P-wetherbeei_contig57034:111..429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57034 112..429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57034.1.1prot_P-wetherbeei_contig57034.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57034 112..429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57034.1.1

>prot_P-wetherbeei_contig57034.1.1 ID=prot_P-wetherbeei_contig57034.1.1|Name=mRNA_P-wetherbeei_contig57034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MDPFAQAVDAWHDVFTLLGTAAVTLLGLLFVAMSLRDDIRQQADTQYLKR
MTSQNLTSFVTVFLMSVFFMIPEASADGIALSIVATVAAPLVNSLRSIPL
YRQQLD
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mRNA from alignment at P-wetherbeei_contig57034:112..429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57034.1.1 ID=mRNA_P-wetherbeei_contig57034.1.1|Name=mRNA_P-wetherbeei_contig57034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig57034:112..429+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCCCTTCGCCCAGGCCGTCGATGCATGGCACGATGTCTTCACGTT GCTGGGCACGGCGGCGGTCACGCTGCTCGGGCTGCTCTTCGTGGCGATGT CGCTGCGCGACGATATCCGCCAGCAGGCGGACACCCAGTACCTGAAGCGG ATGACCTCGCAGAACCTCACGAGCTTCGTGACGGTCTTCCTGATGTCCGT CTTCTTCATGATCCCGGAGGCCTCGGCGGACGGGATCGCCCTCTCGATCG TGGCGACCGTGGCGGCGCCGCTCGTCAACTCGCTGCGCTCGATCCCGCTC TACCGGCAGCAGCTGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57034:112..429+

>mRNA_P-wetherbeei_contig57034.1.1 ID=mRNA_P-wetherbeei_contig57034.1.1|Name=mRNA_P-wetherbeei_contig57034.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig57034:112..429+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCCCTTCGCCCAGGCCGTCGATGCATGGCACGATGTCTTCACGTT
GCTGGGCACGGCGGCGGTCACGCTGCTCGGGCTGCTCTTCGTGGCGATGT
CGCTGCGCGACGATATCCGCCAGCAGGCGGACACCCAGTACCTGAAGCGG
ATGACCTCGCAGAACCTCACGAGCTTCGTGACGGTCTTCCTGATGTCCGT
CTTCTTCATGATCCCGGAGGCCTCGGCGGACGGGATCGCCCTCTCGATCG
TGGCGACCGTGGCGGCGCCGCTCGTCAACTCGCTGCGCTCGATCCCGCTC
TACCGGCAGCAGCTGGAC
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