mRNA_P-wetherbeei_contig57014.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig57014.1.1
Unique NamemRNA_P-wetherbeei_contig57014.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: UPI00201C8C8C (Flp family type IVb pilin n=2 Tax=Rhodopseudomonas sp. HC1 TaxID=2897386 RepID=UPI00201C8C8C)

HSP 1 Score: 62.0 bits (149), Expect = 1.220e-11
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            +RRLIS FL+D SGATAIEYAL+ATGIS+ I+V+V +IG  L G L++++  LK
Sbjct:    2 VRRLISEFLSDESGATAIEYALIATGISIVILVAVNAIGAKLDGTLTTVNTSLK 55
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A508TM35_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A508TM35_9BRAD)

HSP 1 Score: 60.5 bits (145), Expect = 4.870e-11
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            M+ LI GFL D SGATAIEYAL+ATGI++AII +V  +G  LSG  +SI   LK
Sbjct:    1 MKTLIVGFLHDESGATAIEYALIATGIAIAIIAAVNGVGSKLSGTFNSISSSLK 54
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A1H1TF93_9BRAD (Pilus assembly protein Flp/PilA n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1TF93_9BRAD)

HSP 1 Score: 60.5 bits (145), Expect = 4.870e-11
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            MR+L S FL+D SGATAIEY L+A GI+ AII +VQ IGP L+ K +SI+  LK
Sbjct:    1 MRQLFSRFLSDQSGATAIEYCLIACGIAFAIIATVQGIGPQLNTKFTSINNSLK 54
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A164AE44_9BRAD (Pilus assembly protein n=6 Tax=Tardiphaga TaxID=1395974 RepID=A0A164AE44_9BRAD)

HSP 1 Score: 60.1 bits (144), Expect = 6.920e-11
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            M RLI+ F+ D SGATAIEYAL+A GISLAIIV+VQ +G  L+G+ ++++  LK
Sbjct:    1 MLRLIAKFIDDESGATAIEYALIAAGISLAIIVAVQGLGTTLNGRYAAVNTSLK 54
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A1E3EGB6_BRAEL (Flp family type IVb pilin n=23 Tax=Bradyrhizobium TaxID=374 RepID=A0A1E3EGB6_BRAEL)

HSP 1 Score: 59.7 bits (143), Expect = 9.840e-11
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            M+ L+S F+ D SGATAIEY L+ATGI++AII +V  +G  LSG  +SI G LK
Sbjct:    1 MKNLVSRFVKDESGATAIEYGLIATGIAIAIIAAVNGVGTKLSGTFNSISGSLK 54
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A1M5MN87_9BRAD (Pilus assembly protein Flp/PilA n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5MN87_9BRAD)

HSP 1 Score: 59.7 bits (143), Expect = 9.840e-11
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            MR+L+S FL D +GATAIEY L+A GI+ AII +VQ IGP L+ K +S++  LK
Sbjct:    1 MRQLVSKFLTDQAGATAIEYCLIACGIAFAIIATVQGIGPQLNTKFTSVNSSLK 54
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A0D7ELA3_RHOPL (Pilus assembly protein n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=A0A0D7ELA3_RHOPL)

HSP 1 Score: 59.7 bits (143), Expect = 9.840e-11
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            MRRL+S F AD +GATAIEYAL+A G+S+ I+V+V SIG  L G  +S+  Q+K
Sbjct:    1 MRRLLSRFRADQTGATAIEYALIAVGLSIVILVAVNSIGSTLDGTFASVKTQIK 54
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A525JIV7_BRASZ (Flp family type IVb pilin n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JIV7_BRASZ)

HSP 1 Score: 59.3 bits (142), Expect = 1.400e-10
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            MR L+  FL D SGATAIEY L+ATGI+ AII +VQ IGP LS K ++++  LK
Sbjct:    1 MRPLVFRFLRDQSGATAIEYCLIATGIAFAIIATVQGIGPQLSTKFTAVNNSLK 54
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BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A7W7Z4E4_9BRAD (Pilus assembly protein Flp/PilA n=2 Tax=Rhodopseudomonas rhenobacensis TaxID=87461 RepID=A0A7W7Z4E4_9BRAD)

HSP 1 Score: 59.3 bits (142), Expect = 1.400e-10
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            MRRL+S F+AD SGAT+IEYAL+ATGIS+ I+ +VQ IG  L+ K  S++  LK
Sbjct:    1 MRRLLSKFVADQSGATSIEYALIATGISIVILSAVQLIGTNLNAKYVSVESALK 54
[Close]
BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Match: A0A257KLS9_9BRAD (Flp family type IVb pilin n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A257KLS9_9BRAD)

HSP 1 Score: 59.3 bits (142), Expect = 1.400e-10
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSIDGQLK 162
            M RLIS F  D SGATAIEYAL+A GISLAII +VQ +G  L+G+ ++++  LK
Sbjct:    1 MLRLISTFAKDESGATAIEYALIACGISLAIIAAVQGLGTTLNGRYAAVNASLK 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig57014.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00201C8C8C1.220e-1161.11Flp family type IVb pilin n=2 Tax=Rhodopseudomonas... [more]
A0A508TM35_9BRAD4.870e-1161.11Uncharacterized protein n=2 Tax=Bradyrhizobium Tax... [more]
A0A1H1TF93_9BRAD4.870e-1161.11Pilus assembly protein Flp/PilA n=1 Tax=Bradyrhizo... [more]
A0A164AE44_9BRAD6.920e-1159.26Pilus assembly protein n=6 Tax=Tardiphaga TaxID=13... [more]
A0A1E3EGB6_BRAEL9.840e-1157.41Flp family type IVb pilin n=23 Tax=Bradyrhizobium ... [more]
A0A1M5MN87_9BRAD9.840e-1157.41Pilus assembly protein Flp/PilA n=1 Tax=Bradyrhizo... [more]
A0A0D7ELA3_RHOPL9.840e-1157.41Pilus assembly protein n=1 Tax=Rhodopseudomonas pa... [more]
A0A525JIV7_BRASZ1.400e-1059.26Flp family type IVb pilin n=1 Tax=Bradyrhizobium s... [more]
A0A7W7Z4E4_9BRAD1.400e-1059.26Pilus assembly protein Flp/PilA n=2 Tax=Rhodopseud... [more]
A0A257KLS9_9BRAD1.400e-1059.26Flp family type IVb pilin n=3 Tax=Bradyrhizobiacea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig57014contigP-wetherbeei_contig57014:201..365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1230476.C207_00915
PFAMsFlp_Fap
Model size165
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.99e-12
EggNOG OGsCOG3847@1|root,COG3847@2|Bacteria,1NBIR@1224|Proteobacteria,2UGAM@28211|Alphaproteobacteria,3K1HV@41294|Bradyrhizobiaceae
DescriptionFlp/Fap pilin component
Cds size165
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186846.4085681-CDS-P-wetherbeei_contig57014:200..3651683186846.4085681-CDS-P-wetherbeei_contig57014:200..365Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig57014 201..365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig57014.1.1prot_P-wetherbeei_contig57014.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig57014 201..365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig57014.1.1

>prot_P-wetherbeei_contig57014.1.1 ID=prot_P-wetherbeei_contig57014.1.1|Name=mRNA_P-wetherbeei_contig57014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
MRRLISGFLADTSGATAIEYALLATGISLAIIVSVQSIGPILSGKLSSID
GQLK*
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mRNA from alignment at P-wetherbeei_contig57014:201..365-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig57014.1.1 ID=mRNA_P-wetherbeei_contig57014.1.1|Name=mRNA_P-wetherbeei_contig57014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig57014:201..365- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACGGCTGATCTCCGGCTTCCTGGCGGACACCTCCGGCGCGACCGC
GATCGAATACGCGTTGCTTGCGACCGGCATCAGCCTTGCTATCATCGTTT
CGGTCCAAAGCATCGGCCCGATCCTGAGCGGGAAGCTGTCGTCGATCGAC
GGCCAGCTCAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig57014:201..365-

>mRNA_P-wetherbeei_contig57014.1.1 ID=mRNA_P-wetherbeei_contig57014.1.1|Name=mRNA_P-wetherbeei_contig57014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig57014:201..365- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACGGCTGATCTCCGGCTTCCTGGCGGACACCTCCGGCGCGACCGC
GATCGAATACGCGTTGCTTGCGACCGGCATCAGCCTTGCTATCATCGTTT
CGGTCCAAAGCATCGGCCCGATCCTGAGCGGGAAGCTGTCGTCGATCGAC
GGCCAGCTCAAGTAA
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