mRNA_P-wetherbeei_contig56994.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56994.1.1
Unique NamemRNA_P-wetherbeei_contig56994.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A0A7V9VWJ8_9CHLR (Alpha/beta hydrolase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VWJ8_9CHLR)

HSP 1 Score: 125 bits (313), Expect = 3.850e-34
Identity = 63/134 (47.01%), Postives = 87/134 (64.93%), Query Frame = 1
Query:    7 YAVMCQDEIPYIDEDAVMEAIEDADVSQAVID-DELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            Y+V+CQDE P+  E  V    + ADVS  VI+   L+++    ++C  WDL  S  I NEPV+S  PTLIVTG +DPITPT  G++ +  L NA LVES +A H P+ TSG CGV+++ +FL +P   +D +CL
Sbjct:    3 YSVLCQDETPFTSEAEVFAFAKSADVSDLVIEYGSLSTLTGIFDVCTRWDLPASSSIENEPVISGAPTLIVTGAYDPITPTSYGDVAMATLPNATLVESGIAGHDPLSTSGDCGVNVMHSFLINPAAVLDTTCL 136          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A0A7V9VUH5_9CHLR (Alpha/beta fold hydrolase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VUH5_9CHLR)

HSP 1 Score: 126 bits (317), Expect = 1.040e-31
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    7 YAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDD-ELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            Y+V+CQDE P+  E  V    + ADVS  VI+   L+++    ++C AWDL  S  I NEPVV D PTLI+TG +DPITPT  GE  +  L NA LVES +A H P+ TSG CGV ++ +FL  P   +D SCL
Sbjct:  346 YSVLCQDETPFTSEAEVFAVAKSADVSDLVIEHGSLSTLTGIFDVCAAWDLAASPAIENEPVVGDAPTLIMTGTYDPITPTSYGEDAMATLPNATLVESGIAGHDPLSTSGDCGVSVMHSFLIDPEAVLDTSCL 479          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A0A1F8LTS6_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_13_46_14 TaxID=1797618 RepID=A0A1F8LTS6_9CHLR)

HSP 1 Score: 95.9 bits (237), Expect = 2.150e-20
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 LHYAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            +HY+V C +E+P+  ++ +  ++E+    +  ++  L   ++   IC+ W  T    I NEPV SDIPTLI++G FDPITP   G+L  + LTN+   E P   H  + +  +C +DI + FL++P  E D +CL
Sbjct:  376 MHYSVQCAEELPFSSQEEITASLEEYPEIREYLEGSLG--ESSLAICEYWTNTRPDPIENEPVPSDIPTLILSGEFDPITPPAWGKLASETLTNSWFFEFPGLGHDVLVSGTECPLDIALEFLDNPYSEPDRTCL 508          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A0A7C3FYA1_9CHLR (Alpha/beta hydrolase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C3FYA1_9CHLR)

HSP 1 Score: 95.9 bits (237), Expect = 2.150e-20
Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 1
Query:    1 LHYAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            +HY+V C +E+P+  E+ +  ++E     +  ++D L   ++   +C+ W  T    + NEPV S IPTLI++G FDPITP   G+L  + LTN+   E P   H  + +  +C VDI + FL++P  E D +CL
Sbjct:  376 MHYSVQCNEELPFNSEEKIAASLEGHPDIREYLEDSLG--ESSLAVCEYWTNTIPDPVENEPVHSAIPTLILSGEFDPITPPAWGKLAAETLTNSRFFEFPGLGHDVLVSGNECPVDIALEFLDNPYSEPDRTCL 508          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A5UX42_ROSS1 (TAP domain protein n=2 Tax=Roseiflexus sp. (strain RS-1) TaxID=357808 RepID=A5UX42_ROSS1)

HSP 1 Score: 95.1 bits (235), Expect = 4.040e-20
Identity = 50/135 (37.04%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 LHYAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            +HY+V+C ++  +  EDA +E      V   +  D   S++ Y E C  W + P     +EPVVSD+PTL+++GRFDPITP   G+++   L+ A +   P   H+ V +S  C   I+ +FL++P ++ DASCL
Sbjct:  386 MHYSVICAEDADFTPEDAPLEG-----VRPFIALDARRSLEGYLERCAVWQVEPLEPFVDEPVVSDVPTLVLSGRFDPITPPAFGDVVARTLSRAYVYTFPDTGHAAVGSSA-CADTILASFLDNPSQQPDASCL 514          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: UPI0019E63C2D (Uncharacterized protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019E63C2D)

HSP 1 Score: 91.3 bits (225), Expect = 8.960e-19
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 LHYAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            ++Y+V+C ++      D  +E     D+   + +  L S+DA  +ICD WD+       +EPV S+IPTL+++GRFDPITP    EL    L  + L   P   H    T G+C   I+ AFLE P    DA+C+
Sbjct:  373 MYYSVVCSEDADIDLTDLALE-----DIYPEIAESGLLSIDAITQICDLWDVEELSSSVDEPVSSEIPTLLLSGRFDPITPPAFAELAAGTLEQSYLFTFPTVGHGAA-TDGECSASIIFAFLEDPELPPDATCI 501          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A0A2W4LQI0_9CHLR (Transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W4LQI0_9CHLR)

HSP 1 Score: 90.9 bits (224), Expect = 1.170e-18
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 LHYAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            + Y+V C +EI ++ E+ +  A +     + V D        Y  ICDAW    +  + NEPVVSD+PTL++ G +DP TP  DG +    LT +V  E P   H  V   G C + I +AFL +P    D+SC+
Sbjct:  312 MFYSVRCHEEIAFLSEEELAAADDAFPQLRGVFD-----QSTYTPICDAWGAGAADPVENEPVVSDLPTLVLAGEYDPATPPEDGRIAAATLTRSVFFEFPGRGHG-VSADGGCPLQITLAFLRNPDAVPDSSCI 440          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: UPI001C900DF8 (alpha/beta fold hydrolase n=1 Tax=Modestobacter lapidis TaxID=1608613 RepID=UPI001C900DF8)

HSP 1 Score: 90.5 bits (223), Expect = 1.650e-18
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   10 AVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            AV CQ+E+P+  E  V  A +D  + +   +          ++C  WD    GE  NEP+VS+IPTL++ G  DPITP   GE + D+L N+     PV  H  V    +C V +  AFL+ P    DA+C+
Sbjct:  370 AVQCQEEVPFSSEQTVAAAADDHPLVEGFFESAPTLGAGIFDVCATWDAGEPGEAENEPLVSEIPTLVLAGDLDPITPPRWGESISDDLPNSFFFSFPVTGHGSVAVH-ECAVQLTSAFLDDPGAAPDAACI 500          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A0A7S8ECI9_9CHLR (Alpha/beta hydrolase n=1 Tax=Phototrophicus methaneseepsis TaxID=2710758 RepID=A0A7S8ECI9_9CHLR)

HSP 1 Score: 89.0 bits (219), Expect = 4.970e-18
Identity = 48/135 (35.56%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    1 LHYAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            ++ AV C DEI +++ ++ ++  +      + +D  L   +A  ++C  W    + E+ NEPV SDIPTL++ G +DPITP    EL    LTN  L E P   H+   +SG CG  I + FL  P    D++CL
Sbjct:  336 MYQAVQCYDEISFLEPESFIKIRDTFPQYASTLDRMLTQHEALLDVCTGWQPVRAAELENEPVRSDIPTLLLVGEYDPITPPAWAELAAQTLTNGYLYEVPGVGHAVTFSSG-CGQQIALRFLWEPSTAPDSACL 469          
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Match: A7NM62_ROSCS (TAP domain protein n=2 Tax=Roseiflexus castenholzii TaxID=120962 RepID=A7NM62_ROSCS)

HSP 1 Score: 89.0 bits (219), Expect = 5.780e-18
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    1 LHYAVMCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPSGEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASHSPVQTSGQCGVDIVVAFLEHPRKEVDASCL 405
            +HYAV+C ++  +  EDA ++      V   +  D   S++ Y E C+ W +     + +EPV SDIPTL+++GRFDPITP   G+++   L+ A +   P   H  V +S  C   I+ AFL++P +  D+SC+
Sbjct:  391 MHYAVICAEDADFTPEDAPLQG-----VRPFIALDGRRSLEGYLERCNIWQVDQLAPVVDEPVSSDIPTLVLSGRFDPITPPEFGDVVARTLSRAYVYTFPDTGHGAVGSSA-CADTILKAFLDNPSQPPDSSCI 519          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56994.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V9VWJ8_9CHLR3.850e-3447.01Alpha/beta hydrolase n=1 Tax=Chloroflexia bacteriu... [more]
A0A7V9VUH5_9CHLR1.040e-3149.25Alpha/beta fold hydrolase n=1 Tax=Chloroflexia bac... [more]
A0A1F8LTS6_9CHLR2.150e-2036.30Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A7C3FYA1_9CHLR2.150e-2036.30Alpha/beta hydrolase n=1 Tax=Dehalococcoidia bacte... [more]
A5UX42_ROSS14.040e-2037.04TAP domain protein n=2 Tax=Roseiflexus sp. (strain... [more]
UPI0019E63C2D8.960e-1936.30Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2W4LQI0_9CHLR1.170e-1836.30Transporter (Fragment) n=1 Tax=Chloroflexi bacteri... [more]
UPI001C900DF81.650e-1836.36alpha/beta fold hydrolase n=1 Tax=Modestobacter la... [more]
A0A7S8ECI9_9CHLR4.970e-1835.56Alpha/beta hydrolase n=1 Tax=Phototrophicus methan... [more]
A7NM62_ROSCS5.780e-1835.56TAP domain protein n=2 Tax=Roseiflexus castenholzi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56994contigP-wetherbeei_contig56994:110..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog357808.RoseRS_2826
PFAMsAbhydrolase_1,Abhydrolase_4
Model size405
Max annot lvl200795|Chloroflexi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.75e-18
EggNOG OGsCOG0596@1|root,COG0596@2|Bacteria,2G6Y2@200795|Chloroflexi
DescriptionPFAM alpha beta hydrolase fold
Cds size390
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186845.8901274-CDS-P-wetherbeei_contig56994:109..4991683186845.8901274-CDS-P-wetherbeei_contig56994:109..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56994 110..499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186845.9050558-UTR-P-wetherbeei_contig56994:499..5141683186845.9050558-UTR-P-wetherbeei_contig56994:499..514Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56994 500..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56994.1.1prot_P-wetherbeei_contig56994.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56994 110..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56994.1.1

>prot_P-wetherbeei_contig56994.1.1 ID=prot_P-wetherbeei_contig56994.1.1|Name=mRNA_P-wetherbeei_contig56994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MCQDEIPYIDEDAVMEAIEDADVSQAVIDDELASMDAYAEICDAWDLTPS
GEIANEPVVSDIPTLIVTGRFDPITPTFDGELLLDNLTNAVLVESPVASH
SPVQTSGQCGVDIVVAFLEHPRKEVDASCL
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mRNA from alignment at P-wetherbeei_contig56994:110..514-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56994.1.1 ID=mRNA_P-wetherbeei_contig56994.1.1|Name=mRNA_P-wetherbeei_contig56994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig56994:110..514- (Phaeothamnion wetherbeei SAG_119_79)
CTCCACTACGCCGTGATGTGCCAGGACGAGATCCCCTACATCGACGAGGA CGCGGTGATGGAGGCCATCGAGGATGCCGATGTCAGCCAGGCCGTGATCG ACGACGAGCTGGCCTCGATGGATGCCTACGCCGAGATCTGCGACGCCTGG GACCTCACCCCCTCGGGCGAGATCGCCAACGAGCCGGTCGTCAGCGACAT CCCCACCCTCATCGTCACCGGCCGCTTCGACCCGATCACGCCCACCTTCG ACGGCGAGCTCCTGCTGGACAACCTCACCAACGCCGTGCTGGTGGAGAGC CCCGTCGCCTCCCACAGCCCCGTGCAGACGAGCGGCCAGTGCGGGGTCGA CATCGTGGTCGCCTTCCTGGAGCACCCGCGCAAGGAGGTGGACGCCTCCT GCCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56994:110..514-

>mRNA_P-wetherbeei_contig56994.1.1 ID=mRNA_P-wetherbeei_contig56994.1.1|Name=mRNA_P-wetherbeei_contig56994.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig56994:110..514- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCCAGGACGAGATCCCCTACATCGACGAGGACGCGGTGATGGAGGC
CATCGAGGATGCCGATGTCAGCCAGGCCGTGATCGACGACGAGCTGGCCT
CGATGGATGCCTACGCCGAGATCTGCGACGCCTGGGACCTCACCCCCTCG
GGCGAGATCGCCAACGAGCCGGTCGTCAGCGACATCCCCACCCTCATCGT
CACCGGCCGCTTCGACCCGATCACGCCCACCTTCGACGGCGAGCTCCTGC
TGGACAACCTCACCAACGCCGTGCTGGTGGAGAGCCCCGTCGCCTCCCAC
AGCCCCGTGCAGACGAGCGGCCAGTGCGGGGTCGACATCGTGGTCGCCTT
CCTGGAGCACCCGCGCAAGGAGGTGGACGCCTCCTGCCTG
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