mRNA_P-wetherbeei_contig56993.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56993.1.1
Unique NamemRNA_P-wetherbeei_contig56993.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56993.1.1 vs. uniprot
Match: A0A7K1B221_9ACTN (Bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase n=2 Tax=root TaxID=1 RepID=A0A7K1B221_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 2.670e-30
Identity = 59/84 (70.24%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 LPAASAPDPLRWSRLPGLDLGGSFPVGHQLPQPYPGFDERLR-GWTWVAADAEFRAPDRHPVIVEPAATLGHRALLVRPDRYIA 249
            LP A  PDP RWSRLPGLDLGG+FP+GHQLPQP    DE L  GW WVAAD     PD  PV+VEP AT GHRA+LVRPDRYIA
Sbjct:  374 LPLADTPDPTRWSRLPGLDLGGAFPIGHQLPQP-DRLDESLPDGWVWVAADDGVVPPDGRPVVVEPRATHGHRAVLVRPDRYIA 456
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BLAST of mRNA_P-wetherbeei_contig56993.1.1 vs. uniprot
Match: A0A3C1L424_9ACTN (FAD_binding_3 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1L424_9ACTN)

HSP 1 Score: 114 bits (284), Expect = 5.430e-29
Identity = 56/84 (66.67%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    1 LPAASAPDPLRWSRLPGLDLGGSFPVGHQLPQPYPGFDERLR-GWTWVAADAEFRAPDRHPVIVEPAATLGHRALLVRPDRYIA 249
            LP  +  DP RWSR+PGL LGG FPVGHQLPQP    D RL  GW WVAAD  F APD H V+VEP AT G  A+LVRPDRYIA
Sbjct:  198 LPTPATADPNRWSRVPGLQLGGEFPVGHQLPQP-DHLDSRLPLGWVWVAADGSFTAPDGHRVVVEPRATYGRPAVLVRPDRYIA 280
[Close]
BLAST of mRNA_P-wetherbeei_contig56993.1.1 vs. uniprot
Match: A0A539E8W3_9ACTN (3-(3-hydroxy-phenyl)propionate hydroxylase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E8W3_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 2.110e-28
Identity = 56/83 (67.47%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    4 PAASAPDPLRWSRLPGLDLGGSFPVGHQLPQPYPGFDERLR-GWTWVAADAEFRAPDRHPVIVEPAATLGHRALLVRPDRYIA 249
            P    PDP RWSRLPGL+LGG FPVGHQLPQP    DE L  GW WVAA   F +PD  PV+VEP AT GH+A+LVRPDRYIA
Sbjct:  351 PEPDPPDPQRWSRLPGLELGGEFPVGHQLPQPNR-LDESLPDGWVWVAAGHTFDSPDHLPVVVEPRATYGHQAVLVRPDRYIA 432
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56993.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7K1B221_9ACTN2.670e-3070.24Bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydr... [more]
A0A3C1L424_9ACTN5.430e-2966.67FAD_binding_3 domain-containing protein (Fragment)... [more]
A0A539E8W3_9ACTN2.110e-2867.473-(3-hydroxy-phenyl)propionate hydroxylase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56993contigP-wetherbeei_contig56993:15..287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size273
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186845.8565638-CDS-P-wetherbeei_contig56993:14..2871683186845.8565638-CDS-P-wetherbeei_contig56993:14..287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56993 15..287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56993.1.1prot_P-wetherbeei_contig56993.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56993 15..287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56993.1.1

>prot_P-wetherbeei_contig56993.1.1 ID=prot_P-wetherbeei_contig56993.1.1|Name=mRNA_P-wetherbeei_contig56993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
LPAASAPDPLRWSRLPGLDLGGSFPVGHQLPQPYPGFDERLRGWTWVAAD
AEFRAPDRHPVIVEPAATLGHRALLVRPDRYIARSEKLDV*
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mRNA from alignment at P-wetherbeei_contig56993:15..287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56993.1.1 ID=mRNA_P-wetherbeei_contig56993.1.1|Name=mRNA_P-wetherbeei_contig56993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig56993:15..287+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCCGCTGCGTCGGCACCAGATCCGTTGCGCTGGTCGCGGTTGCCCGG
GCTCGATCTCGGTGGTTCGTTCCCCGTCGGTCACCAACTGCCGCAGCCGT
ACCCCGGCTTCGACGAACGCTTGCGCGGCTGGACCTGGGTCGCCGCCGAC
GCGGAGTTTCGGGCCCCCGATCGCCACCCCGTGATCGTCGAACCCGCAGC
GACGTTGGGCCACCGAGCCCTGCTGGTCCGCCCCGACCGCTACATCGCCC
GCTCCGAAAAGTTGGATGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56993:15..287+

>mRNA_P-wetherbeei_contig56993.1.1 ID=mRNA_P-wetherbeei_contig56993.1.1|Name=mRNA_P-wetherbeei_contig56993.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig56993:15..287+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCCGCTGCGTCGGCACCAGATCCGTTGCGCTGGTCGCGGTTGCCCGG
GCTCGATCTCGGTGGTTCGTTCCCCGTCGGTCACCAACTGCCGCAGCCGT
ACCCCGGCTTCGACGAACGCTTGCGCGGCTGGACCTGGGTCGCCGCCGAC
GCGGAGTTTCGGGCCCCCGATCGCCACCCCGTGATCGTCGAACCCGCAGC
GACGTTGGGCCACCGAGCCCTGCTGGTCCGCCCCGACCGCTACATCGCCC
GCTCCGAAAAGTTGGATGTCTGA
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