mRNA_P-wetherbeei_contig56944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56944.1.1
Unique NamemRNA_P-wetherbeei_contig56944.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A2G4J381_9BURK (ABC transporter substrate-binding protein n=5 Tax=root TaxID=1 RepID=A0A2G4J381_9BURK)

HSP 1 Score: 77.8 bits (190), Expect = 2.790e-15
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    4 DGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
            DGTIKIG+VSP TG LA F +ADAF   GI+ F+ DGL VGGKS+ +EIL EDSES    AA
Sbjct:   51 DGTIKIGYVSPATGPLAAFASADAFIFEGIKTFLADGLRVGGKSYKVEILSEDSESDPTKAA 112          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A2T0L9I9_9BURK (Uncharacterized protein n=1 Tax=Paraburkholderia sp. BL18I3N2 TaxID=1938799 RepID=A0A2T0L9I9_9BURK)

HSP 1 Score: 70.9 bits (172), Expect = 1.830e-14
Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
            G  T+KIG+VSPQTG LAPFG AD F I  ++  +K+G+++GGKS+ + I+V+DS+S+ + AA
Sbjct:   37 GPRTLKIGYVSPQTGPLAPFGEADRFTIQQMQTALKNGIVIGGKSYPVSIVVKDSQSNPNRAA 99          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: UPI00131DDF19 (ABC transporter substrate-binding protein n=1 Tax=Xenophilus sp. L33 TaxID=1747220 RepID=UPI00131DDF19)

HSP 1 Score: 69.7 bits (169), Expect = 2.010e-12
Identity = 33/59 (55.93%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
            T+KIG+VSPQTG LAPFG AD + I  ++   KDGL VGGK +A+EI+++DS+S+ + A
Sbjct:   29 TLKIGYVSPQTGPLAPFGEADKWVIEQMKSAFKDGLTVGGKKYAVEIVLKDSQSNPNRA 87          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A5C5TNZ6_9HYPH (ABC transporter substrate-binding protein n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A5C5TNZ6_9HYPH)

HSP 1 Score: 69.7 bits (169), Expect = 2.020e-12
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   13 IKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
            IKIG+VSPQTG LAPF  AD F I G+ +  K GL +GG++ A+EILV+DS+S+ + AA
Sbjct:   35 IKIGYVSPQTGPLAPFAEADNFVIGGVREAAKAGLSIGGRNQALEILVKDSQSNPNRAA 93          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A3N8KD56_9BURK (ABC transporter substrate-binding protein n=3 Tax=Burkholderia TaxID=32008 RepID=A0A3N8KD56_9BURK)

HSP 1 Score: 69.3 bits (168), Expect = 2.780e-12
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
            G  T+KIG+VSPQTG LAPFG AD F I  ++  +K+G+ +GGK+F + ILV+DS+S+ + A
Sbjct:   37 GTRTLKIGYVSPQTGPLAPFGEADRFTIQQMQAALKNGIAIGGKTFPVSILVKDSQSNPNRA 98          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A6B1HQZ8_9PROT (ABC transporter substrate-binding protein n=5 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6B1HQZ8_9PROT)

HSP 1 Score: 69.3 bits (168), Expect = 2.810e-12
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
            T+KIGFVSPQTG LAPFG AD F +A   + +K+G+ +G K++ +EI+ +DS+S+ + AA
Sbjct:   49 TVKIGFVSPQTGPLAPFGEADRFVLADARETLKNGIKIGSKTYPVEIVAKDSQSNPNRAA 108          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: UPI0019A0765D (ABC transporter substrate-binding protein n=3 Tax=unclassified Variovorax TaxID=663243 RepID=UPI0019A0765D)

HSP 1 Score: 68.2 bits (165), Expect = 7.080e-12
Identity = 32/59 (54.24%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
            TIKIGFVSPQTG LAPFG AD + +  ++   KDG+ VGGK +A++I+++DS+S+ + A
Sbjct:   29 TIKIGFVSPQTGPLAPFGEADKWVVDQMKTAFKDGINVGGKKYAVQIVLKDSQSNPNRA 87          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A1G3HEC0_9RHOO (ABC transporter substrate-binding protein n=1 Tax=Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 TaxID=1802018 RepID=A0A1G3HEC0_9RHOO)

HSP 1 Score: 68.2 bits (165), Expect = 7.110e-12
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
            TIKIG+VSPQTG LA FG  DAF +  ++  +  G+ VGGKS+A+EI+V+DS+S+++ AA
Sbjct:   38 TIKIGYVSPQTGPLAVFGEPDAFTLTEMKKTLAGGIKVGGKSYAVEIVVKDSQSNSNRAA 97          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A6J4ZNJ7_9BURK (Peripla_BP_6 domain-containing protein n=33 Tax=Burkholderiaceae TaxID=119060 RepID=A0A6J4ZNJ7_9BURK)

HSP 1 Score: 68.2 bits (165), Expect = 7.130e-12
Identity = 31/62 (50.00%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTA 186
            G  T+KIG+VSPQTG LAPFG AD F I  ++  +K+G+++GGK++ + I+V+DS+S+ + A
Sbjct:   37 GPRTLKIGYVSPQTGPLAPFGEADRFTIQQMQTTLKNGIVIGGKTYPVSIVVKDSQSNPNRA 98          
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Match: A0A7Y9R2H5_9BURK (Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Sphaerotilus montanus TaxID=522889 RepID=A0A7Y9R2H5_9BURK)

HSP 1 Score: 68.2 bits (165), Expect = 7.160e-12
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   10 TIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEILVEDSESSTDTAA 189
            TI+IG++SP TG LAPFG  D + +A I++ +KDGL + G  +A+E+LV DS+S+ + AA
Sbjct:   46 TIRIGYISPLTGPLAPFGETDKYTVAKIQELLKDGLTIHGTKYAVEVLVRDSQSNPNKAA 105          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2G4J381_9BURK2.790e-1564.52ABC transporter substrate-binding protein n=5 Tax=... [more]
A0A2T0L9I9_9BURK1.830e-1452.38Uncharacterized protein n=1 Tax=Paraburkholderia s... [more]
UPI00131DDF192.010e-1255.93ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A5C5TNZ6_9HYPH2.020e-1257.63ABC transporter substrate-binding protein n=2 Tax=... [more]
A0A3N8KD56_9BURK2.780e-1253.23ABC transporter substrate-binding protein n=3 Tax=... [more]
A0A6B1HQZ8_9PROT2.810e-1251.67ABC transporter substrate-binding protein n=5 Tax=... [more]
UPI0019A0765D7.080e-1254.24ABC transporter substrate-binding protein n=3 Tax=... [more]
A0A1G3HEC0_9RHOO7.110e-1255.00ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A6J4ZNJ7_9BURK7.130e-1250.00Peripla_BP_6 domain-containing protein n=33 Tax=Bu... [more]
A0A7Y9R2H5_9BURK7.160e-1250.00Branched-chain amino acid transport system substra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56944contigP-wetherbeei_contig56944:24..212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog543728.Vapar_6133
PFAMsPeripla_BP_6,TAT_signal
Model size189
Max annot lvl1224|Proteobacteria
KEGG koko:K01999
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.59e-12
EggNOG OGsCOG0683@1|root,COG0683@2|Bacteria,1N0MT@1224|Proteobacteria
DescriptionABC transporter substrate-binding protein
Cds size189
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186845.2813056-CDS-P-wetherbeei_contig56944:23..2121683186845.2813056-CDS-P-wetherbeei_contig56944:23..212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56944 24..212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56944.1.1prot_P-wetherbeei_contig56944.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56944 24..212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56944.1.1

>prot_P-wetherbeei_contig56944.1.1 ID=prot_P-wetherbeei_contig56944.1.1|Name=mRNA_P-wetherbeei_contig56944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
GDGTIKIGFVSPQTGALAPFGAADAFAIAGIEDFVKDGLMVGGKSFAIEI
LVEDSESSTDTAA
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mRNA from alignment at P-wetherbeei_contig56944:24..212-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56944.1.1 ID=mRNA_P-wetherbeei_contig56944.1.1|Name=mRNA_P-wetherbeei_contig56944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig56944:24..212- (Phaeothamnion wetherbeei SAG_119_79)
GGTGACGGCACGATCAAGATCGGCTTCGTCAGCCCGCAGACCGGGGCGCT GGCACCCTTCGGCGCCGCCGACGCGTTCGCCATCGCCGGCATCGAGGACT TCGTCAAGGACGGCCTCATGGTGGGCGGCAAGAGCTTCGCGATCGAGATC CTCGTCGAGGACAGCGAGTCGAGCACCGACACGGCTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56944:24..212-

>mRNA_P-wetherbeei_contig56944.1.1 ID=mRNA_P-wetherbeei_contig56944.1.1|Name=mRNA_P-wetherbeei_contig56944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig56944:24..212- (Phaeothamnion wetherbeei SAG_119_79)
GGTGACGGCACGATCAAGATCGGCTTCGTCAGCCCGCAGACCGGGGCGCT
GGCACCCTTCGGCGCCGCCGACGCGTTCGCCATCGCCGGCATCGAGGACT
TCGTCAAGGACGGCCTCATGGTGGGCGGCAAGAGCTTCGCGATCGAGATC
CTCGTCGAGGACAGCGAGTCGAGCACCGACACGGCTGCT
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