mRNA_P-wetherbeei_contig569.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig569.2.1
Unique NamemRNA_P-wetherbeei_contig569.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig569.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig569contigP-wetherbeei_contig569:2845..3342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.6765807-CDS-P-wetherbeei_contig569:2846..29911683186844.6765807-CDS-P-wetherbeei_contig569:2846..2991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig569 2847..2991 -
1683186844.6858616-CDS-P-wetherbeei_contig569:3214..33421683186844.6858616-CDS-P-wetherbeei_contig569:3214..3342Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig569 3215..3342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig569.2.1prot_P-wetherbeei_contig569.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig569 2847..3342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig569.2.1

>prot_P-wetherbeei_contig569.2.1 ID=prot_P-wetherbeei_contig569.2.1|Name=mRNA_P-wetherbeei_contig569.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
PHHDSAPAAASRCHRLDSVRDTTTTTTTTTKSMIQRGACFRRRLQNCMDK
LAEDIWRWQAAAGARKADGADAYVEYAEANAAPPAPATTAT
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mRNA from alignment at P-wetherbeei_contig569:2845..3342-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig569.2.1 ID=mRNA_P-wetherbeei_contig569.2.1|Name=mRNA_P-wetherbeei_contig569.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig569:2845..3342- (Phaeothamnion wetherbeei SAG_119_79)
CCCCATCACGACTCCGCTCCTGCCGCCGCGTCGCGCTGCCACCGCCTGGA
CTCTGTCCGCGATACGACAACGACGACGACGACGACGACGAAATCGATGA
TACAGCGCGGCGCATGCTTTCGCCGCAGGTGCGTTTCTCAGGCTCCCTCC
CCTCTTACCTTTCCTTTCACGGGGACGCTGAGAAAGAAAACTGCGACGTC
GCCCTTCCTGGAGTGCTGCTGACTGGAGTAAGTTACGAATGTGTGCCAAC
CGTTTCTTCCCCGTGTGAAGTACAATGGAAAGATCCTGAAGCTCGACTCT
CGCGACTGCGAACGCCCTTGCCGCATCTCTTTAAACCTGTCGTTTCCGTA
GACTGCAGAACTGCATGGATAAGCTCGCTGAAGACATCTGGCGGTGGCAG
GCCGCAGCGGGGGCTCGCAAAGCCGACGGAGCAGACGCGTACGTCGAATA
TGCTGAGGCCAATGCGGCGCCGCCGGCGCCGGCCACGACCGCGACCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig569:2845..3342-

>mRNA_P-wetherbeei_contig569.2.1 ID=mRNA_P-wetherbeei_contig569.2.1|Name=mRNA_P-wetherbeei_contig569.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig569:2845..3342- (Phaeothamnion wetherbeei SAG_119_79)
CCCCATCACGACTCCGCTCCTGCCGCCGCGTCGCGCTGCCACCGCCTGGA
CTCTGTCCGCGATACGACAACGACGACGACGACGACGACGAAATCGATGA
TACAGCGCGGCGCATGCTTTCGCCGCAGACTGCAGAACTGCATGGATAAG
CTCGCTGAAGACATCTGGCGGTGGCAGGCCGCAGCGGGGGCTCGCAAAGC
CGACGGAGCAGACGCGTACGTCGAATATGCTGAGGCCAATGCGGCGCCGC
CGGCGCCGGCCACGACCGCGACC
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