mRNA_P-wetherbeei_contig5689.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5689.1.1
Unique NamemRNA_P-wetherbeei_contig5689.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A1F3A6W8_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F3A6W8_9PROT)

HSP 1 Score: 114 bits (286), Expect = 3.210e-32
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    4 KKYKNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 192
            K+ KNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP
Sbjct:    3 KERKNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 65          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A521L5T8_9HYPH (Toxin-antitoxin system n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521L5T8_9HYPH)

HSP 1 Score: 110 bits (276), Expect = 1.590e-30
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 1
Query:    1 MKKYKNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 192
            MKKY+NTLTIRGLDD +IERLKARARTKGRSLEADLRDLL  TSRQPLVLDA+AEADRIAAMTP
Sbjct:    1 MKKYRNTLTIRGLDDAVIERLKARARTKGRSLEADLRDLLVLTSRQPLVLDAIAEADRIAAMTP 64          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A1E4HM20_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4HM20_9PROT)

HSP 1 Score: 105 bits (263), Expect = 2.030e-28
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    4 KKYKNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 192
            KK KNTLTIRGLDD  IERLKARAR++ RSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP
Sbjct:   12 KKPKNTLTIRGLDDATIERLKARARSRKRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 74          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A1H8W6R5_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8W6R5_9PROT)

HSP 1 Score: 91.3 bits (225), Expect = 9.270e-23
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1
Query:   13 KNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 192
            KNTLTIRGLDD+++E LKARART+  SLEA+LR++L+  SRQPLVLD LAEADRIAAMTP
Sbjct:    3 KNTLTIRGLDDKVVENLKARARTRRHSLEAELREILSQASRQPLVLDPLAEADRIAAMTP 62          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A521QHK0_9HYPH (Uncharacterized protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QHK0_9HYPH)

HSP 1 Score: 90.1 bits (222), Expect = 2.450e-22
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1
Query:   22 LTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 192
            LTIR LDD +I+RLK RA+ KGRSLEA+LRDLLTHT+RQPL+LD LAEADR+AAMTP
Sbjct:    4 LTIRRLDDAVIDRLKERAQAKGRSLEAELRDLLTHTARQPLILDPLAEADRVAAMTP 60          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: UPI001E4CDB5B (plasmid stabilization protein n=1 Tax=Reyranella aquatilis TaxID=2035356 RepID=UPI001E4CDB5B)

HSP 1 Score: 90.1 bits (222), Expect = 2.970e-22
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 1
Query:   19 TLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 192
            TLTIRGLD  II+RLK  AR KGRSLEADLRDLLT+ S QPLVLDA+AEADRIAAMTP
Sbjct:   17 TLTIRGLDTAIIDRLKVHARAKGRSLEADLRDLLTYASGQPLVLDAVAEADRIAAMTP 74          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: UPI001C21681D (plasmid stabilization protein n=1 Tax=Reyranella sp. MMS21-HV4-11 TaxID=2849149 RepID=UPI001C21681D)

HSP 1 Score: 89.4 bits (220), Expect = 4.560e-22
Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 MKKYKNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTP 192
            M K   TLTIRGLD  IIERLK  AR KGRSLEADLRDLLT+ S QPLVLD L EADRIAAMTP
Sbjct:    1 MNKRGTTLTIRGLDVAIIERLKVHARAKGRSLEADLRDLLTYASGQPLVLDPLEEADRIAAMTP 64          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A522YWP2_9HYPH (Toxin-antitoxin system n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A522YWP2_9HYPH)

HSP 1 Score: 87.8 bits (216), Expect = 2.180e-21
Identity = 48/59 (81.36%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   19 TLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTPQ 195
            TLTIRGLD  IIERLK  AR KGRSLEADLRDLLT+ S QPLVLD L EADRIAAMTP+
Sbjct:   13 TLTIRGLDVAIIERLKIHARAKGRSLEADLRDLLTYASGQPLVLDPLEEADRIAAMTPR 71          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A259MMG2_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MMG2_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 5.770e-21
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   19 TLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTPQ 195
            TLTIRGLD  IIERLK  AR +GRSLEADLRDLLT+ S QPLV+D L EADRIAAMTPQ
Sbjct:   10 TLTIRGLDVAIIERLKNHARARGRSLEADLRDLLTYASGQPLVVDPLEEADRIAAMTPQ 68          
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Match: A0A6N7A2Q3_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N7A2Q3_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 6.260e-21
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   19 TLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVLDALAEADRIAAMTPQ 195
            TLTIRGLD  IIERLK  AR +GRSLEADLRDLLT+ S QPLVLD L EADRIAAMTP+
Sbjct:   13 TLTIRGLDVAIIERLKIHARARGRSLEADLRDLLTYASGQPLVLDPLEEADRIAAMTPR 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5689.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3A6W8_9PROT3.210e-3296.83Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A521L5T8_9HYPH1.590e-3090.63Toxin-antitoxin system n=1 Tax=Reyranella sp. TaxI... [more]
A0A1E4HM20_9PROT2.030e-2890.48Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A1H8W6R5_9PROT9.270e-2376.67Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A521QHK0_9HYPH2.450e-2278.95Uncharacterized protein n=1 Tax=Reyranella sp. Tax... [more]
UPI001E4CDB5B2.970e-2282.76plasmid stabilization protein n=1 Tax=Reyranella a... [more]
UPI001C21681D4.560e-2278.13plasmid stabilization protein n=1 Tax=Reyranella s... [more]
A0A522YWP2_9HYPH2.180e-2181.36Toxin-antitoxin system n=1 Tax=Reyranella sp. TaxI... [more]
A0A259MMG2_9PROT5.770e-2179.66Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A6N7A2Q3_9PROT6.260e-2179.66Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5689contigP-wetherbeei_contig5689:236..430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1246445.ANAY01000018_gene1978
PFAMsArc
Model size195
Max annot lvl2|Bacteria
KEGG koko:K21495
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.81e-07
EggNOG OGsCOG4691@1|root,COG4691@2|Bacteria
DescriptionPlasmid stability protein
Cds size195
COG categoryS
BRITEko00000,ko02048
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.501155-CDS-P-wetherbeei_contig5689:235..4301683186844.501155-CDS-P-wetherbeei_contig5689:235..430Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5689 236..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5689.1.1prot_P-wetherbeei_contig5689.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5689 236..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5689.1.1

>prot_P-wetherbeei_contig5689.1.1 ID=prot_P-wetherbeei_contig5689.1.1|Name=mRNA_P-wetherbeei_contig5689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
MKKYKNTLTIRGLDDRIIERLKARARTKGRSLEADLRDLLTHTSRQPLVL
DALAEADRIAAMTPQ
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mRNA from alignment at P-wetherbeei_contig5689:236..430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5689.1.1 ID=mRNA_P-wetherbeei_contig5689.1.1|Name=mRNA_P-wetherbeei_contig5689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig5689:236..430+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAAGTACAAGAACACCCTGACCATTCGCGGGCTCGACGACAGGAT CATCGAGCGCCTGAAGGCGCGCGCCCGCACCAAGGGCCGCTCGCTCGAGG CCGACCTGCGCGACCTGCTGACCCACACCTCGCGCCAGCCTCTGGTCCTC GACGCGCTGGCCGAGGCCGACCGCATCGCCGCCATGACGCCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5689:236..430+

>mRNA_P-wetherbeei_contig5689.1.1 ID=mRNA_P-wetherbeei_contig5689.1.1|Name=mRNA_P-wetherbeei_contig5689.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig5689:236..430+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAAAGTACAAGAACACCCTGACCATTCGCGGGCTCGACGACAGGAT
CATCGAGCGCCTGAAGGCGCGCGCCCGCACCAAGGGCCGCTCGCTCGAGG
CCGACCTGCGCGACCTGCTGACCCACACCTCGCGCCAGCCTCTGGTCCTC
GACGCGCTGGCCGAGGCCGACCGCATCGCCGCCATGACGCCGCAG
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