mRNA_P-wetherbeei_contig56874.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56874.1.1
Unique NamemRNA_P-wetherbeei_contig56874.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: A0A6A7KQI9_9PROT (Extracellular solute-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6A7KQI9_9PROT)

HSP 1 Score: 196 bits (497), Expect = 7.530e-59
Identity = 89/165 (53.94%), Postives = 118/165 (71.52%), Query Frame = 1
Query:   19 FTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPTMV 513
            FTK YPG+  +V+R TGQV Y RL+QDL+A V  CD+F+ TD+G YV+LK  +QLL +VP+N A         D+D  Y  T  N TV++YN +LV   +APK WTDL++PKW ++VAVAHPGFSG+MG W + M  LYGWE+ +KLK   P +GRSL+DPPT++
Sbjct:   64 FTKRYPGVTVDVIRTTGQVAYARLTQDLRAGVPQCDLFTGTDIGHYVTLKKDKQLLKYVPENHAKLRKPYQNLDSDGYYFTTSANPTVIIYNTNLVKPEEAPKNWTDLVNPKWTDKVAVAHPGFSGSMGSWTVLMVKLYGWEFLDKLKKVNPLIGRSLLDPPTIL 228          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: UPI001C2C0418 (extracellular solute-binding protein n=1 Tax=Siccirubricoccus sp. G192 TaxID=2849651 RepID=UPI001C2C0418)

HSP 1 Score: 193 bits (490), Expect = 6.320e-58
Identity = 88/171 (51.46%), Postives = 116/171 (67.84%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPTMV 513
            E + + F + YPG+K NVVR T QV +QRLSQD++A+V NCDVFSSTD+G + +LK A QL  +VP+N           D D  Y  T   T ++ YN   V   +AP+KWTDL+DPKWR+ VAV HPGFSG +G WV++M  LYGW+YF  L+ N+PQ+GRS+ D  TM+
Sbjct:   47 EAIGRAFNETYPGVKVNVVRTTAQVAFQRLSQDMRARVRNCDVFSSTDMGHFTALKEAGQLEKYVPRNAVHLFEAYRDIDPDGYYHTTAAGTVLITYNTSKVKPEEAPRKWTDLLDPKWRDHVAVGHPGFSGYVGTWVVAMRKLYGWDYFRNLEKNKPQIGRSINDTVTML 217          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: A0A259MNQ2_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MNQ2_9PROT)

HSP 1 Score: 188 bits (477), Expect = 7.410e-56
Identity = 92/169 (54.44%), Postives = 116/169 (68.64%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPT 507
            E + + FT++Y GIK NVVR T QV YQRL QD+K    NCDVFSSTDLG Y  LKA  +L  FVP+N++  SP+   FD D  +  T     V+ YN + V A DAPKKW DL+D KW+ +V+  HPGFSG +G WVLSM  LYGW+YF+KL+ N+PQ+GRS+ D  T
Sbjct:   58 EDLGRGFTEMY-GIKVNVVRTTAQVAYQRLLQDIKNNQTNCDVFSSTDLGHYARLKADGRLDKFVPENMSKISPVFQNFDPDGFFQTTAAGMVVITYNTNKVKAEDAPKKWEDLLDIKWKGKVSTGHPGFSGYVGTWVLSMKKLYGWQYFDKLEKNKPQIGRSINDTVT 225          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: A0A3N1KQE3_9PROT (Iron(III) transport system substrate-binding protein n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1KQE3_9PROT)

HSP 1 Score: 186 bits (471), Expect = 5.310e-55
Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPTMV 513
            E   + F K YPGIK NVVR T QV YQRL+QD+ A VA CDVFSSTD+G Y+ LK    L+ + P+N A  +    KFD D  Y  T     V+ Y  D +   + PK WTDL++PKWRN++A  HPGFSG +G W ++M   YGW++FEKL+ NRPQ+GRS+ D  TM+
Sbjct:   53 EETGRAFEKKYPGIKVNVVRTTAQVAYQRLNQDISAGVAKCDVFSSTDIGHYLELKKKGLLMQYTPENAAKVAEPFQKFDPDGLYYPTAAGLIVIGYRTDKLKPEELPKNWTDLLEPKWRNKIATGHPGFSGYVGTWAVAMEKRYGWQFFEKLEKNRPQIGRSINDTVTML 223          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: UPI001FE25155 (extracellular solute-binding protein n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001FE25155)

HSP 1 Score: 186 bits (471), Expect = 5.590e-55
Identity = 88/169 (52.07%), Postives = 115/169 (68.05%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPT 507
            E V + FT  +PG++CNVVR+T QV +QRLSQD++A  A CDVFSSTD G Y  LK   +LL + P+N A   P + + D D  Y  +     +M +N   V  ADAPKKWTD +DPK+RNQ+AV HPGFSGA+G W + M  +YGW+YF +L+ NRP +GRS +DP T
Sbjct:   54 ETVGRAFTARFPGVRCNVVRSTSQVAFQRLSQDMRAGAAQCDVFSSTDFGHYSLLKRENRLLQYRPENDAGLFPDLRRADPDGYYHTSFMGLYLMAHNTRRVPEADAPKKWTDALDPKYRNQIAVGHPGFSGAIGIWAVQMRKMYGWDYFTRLERNRPMIGRSSLDPVT 222          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: A0A8J3ECY4_9PROT (ABC transporter substrate-binding protein n=1 Tax=Caldovatus sediminis TaxID=2041189 RepID=A0A8J3ECY4_9PROT)

HSP 1 Score: 186 bits (471), Expect = 7.250e-55
Identity = 85/171 (49.71%), Postives = 117/171 (68.42%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPTMV 513
            E + + F + YPG++  VVR T QV YQRL+QD++A+V NCDVFSSTD+G YV LKA  +L  +VP+  ++    +   D D  Y  T   T ++ YN D V   + P+KWTDL+DPKW+N+V V HPGFSG +G WV+ M  LYGW+YF +L+ N+PQ+GRS+ D  TM+
Sbjct:   65 EALGRAFDETYPGVQARVVRTTAQVAYQRLTQDMRARVQNCDVFSSTDVGHYVRLKADERLEKYVPERTSEIIESLRGIDPDGFYHTTSIGTVLINYNTDRVKPEEGPQKWTDLLDPKWQNRVTVGHPGFSGYVGTWVVLMRKLYGWDYFRRLERNKPQIGRSINDTVTML 235          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: UPI001081CF1F (extracellular solute-binding protein n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001081CF1F)

HSP 1 Score: 185 bits (469), Expect = 1.450e-54
Identity = 84/171 (49.12%), Postives = 118/171 (69.01%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPTMV 513
            E + + F + +PG+K NVVR T QV +QRLSQDL+A+V NCDVFSSTD+G Y+ LK   +   +VP+N+    P +   D D  Y  T   T ++ +N + V+  +AP KWTDL+DPKW N+V V HP FSG +G WV++M  LYGW++F++L+ NRPQ+GRS+ D  TM+
Sbjct:   65 EALGRAFDEAFPGVKANVVRTTAQVAFQRLSQDLRARVQNCDVFSSTDVGHYIRLKEDGRFEKYVPENIQHVIPSLRDIDKDGYYHTTSIGTVLINFNTNRVSREEAPVKWTDLLDPKWENRVTVGHPAFSGYVGTWVVTMRKLYGWDFFKRLERNRPQIGRSINDTVTML 235          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: UPI001C2CAA9B (extracellular solute-binding protein n=1 Tax=Siccirubricoccus sp. G192 TaxID=2849651 RepID=UPI001C2CAA9B)

HSP 1 Score: 183 bits (465), Expect = 5.060e-54
Identity = 87/171 (50.88%), Postives = 116/171 (67.84%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPTMV 513
            E V + F + YPG++CNVVR+T QV +QRLSQD +A VA CDVFSSTD G Y  LK   +LL + P N     P +   D D  Y  +     ++ +N   V+ A+APK WTD++DPKWRNQ+AV HPGFSGA+G W + M  +YGW+YF++L+ NRP +GRS IDP T++
Sbjct:   59 EAVGRAFGERYPGVRCNVVRSTSQVAFQRLSQDNRAGVAQCDVFSSTDFGHYSLLKREGRLLKYRPVNADGLLPALRHADPDDTYQSSFIGLYLLAHNTRKVSEAEAPKSWTDVLDPKWRNQLAVGHPGFSGAIGIWAVQMRKMYGWDYFKRLERNRPLIGRSSIDPVTVL 229          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: UPI0019B551A0 (Extracellular solute-binding protein n=1 Tax=Tardiphaga sp. TaxID=1926292 RepID=UPI0019B551A0)

HSP 1 Score: 182 bits (463), Expect = 9.110e-54
Identity = 90/171 (52.63%), Postives = 110/171 (64.33%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPTMV 513
            E  A  FTK +PGIK NVVRAT QV YQRLSQD++A  ANCDVF+STD+GQYVSLK    LLP+         P     D D AY + +  T    YN + V A   PK W D I+PKW+ Q+ V HPGFSG +G WV+ M  LYGW+YFE+L   +P VGRS+ID  T++
Sbjct:   56 ETHAALFTKAFPGIKVNVVRATAQVAYQRLSQDIQAGAANCDVFASTDMGQYVSLKQRGLLLPYKMHASDAIDPRFLNIDPDDAYQVVNATTVGFGYNTNKVKAEQVPKTWKDFINPKWKGQLVVGHPGFSGFVGTWVVQMNKLYGWDYFEQLAELKPHVGRSIIDTVTIL 226          
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Match: UPI001BA46466 (extracellular solute-binding protein n=2 Tax=Roseomonas hellenica TaxID=2687306 RepID=UPI001BA46466)

HSP 1 Score: 182 bits (463), Expect = 1.040e-53
Identity = 87/169 (51.48%), Postives = 115/169 (68.05%), Query Frame = 1
Query:    1 ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLGQYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGDLVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYFEKLKANRPQVGRSLIDPPT 507
            E V + FT+ Y G++ NVVR+T QV +QRLSQD +A VA CDVFSSTD G Y  LK   +LL + P N     P + + D D  Y  +     +M +N   V+ ADAPKKWTD++DP+WR+Q+AV HPGFSGA+G W + M  +YGW+YF +L+ NRPQ+GRS +DP T
Sbjct:   60 EAVGRAFTERYAGVRVNVVRSTSQVAFQRLSQDTRAGVAQCDVFSSTDFGHYSLLKRENRLLQYRPVNDEQLLPQLRRADPDGYYHTSFMGLYLMAHNTTKVSEADAPKKWTDVLDPRWRDQLAVGHPGFSGAIGIWAVQMRKMYGWDYFTRLERNRPQIGRSSMDPVT 228          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56874.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7KQI9_9PROT7.530e-5953.94Extracellular solute-binding protein n=1 Tax=Alpha... [more]
UPI001C2C04186.320e-5851.46extracellular solute-binding protein n=1 Tax=Sicci... [more]
A0A259MNQ2_9PROT7.410e-5654.44Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
A0A3N1KQE3_9PROT5.310e-5550.88Iron(III) transport system substrate-binding prote... [more]
UPI001FE251555.590e-5552.07extracellular solute-binding protein n=1 Tax=Roseo... [more]
A0A8J3ECY4_9PROT7.250e-5549.71ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001081CF1F1.450e-5449.12extracellular solute-binding protein n=1 Tax=Crena... [more]
UPI001C2CAA9B5.060e-5450.88extracellular solute-binding protein n=1 Tax=Sicci... [more]
UPI0019B551A09.110e-5452.63Extracellular solute-binding protein n=1 Tax=Tardi... [more]
UPI001BA464661.040e-5351.48extracellular solute-binding protein n=2 Tax=Roseo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56874contigP-wetherbeei_contig56874:3..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1298867.AUES01000001_gene1884
PFAMsSBP_bac_11,SBP_bac_6
Model size513
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02012
KEGG TC3.A.1.10
KEGG Pathwayko02010,map02010
KEGG ModuleM00190
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.79e-55
EggNOG OGsCOG1840@1|root,COG1840@2|Bacteria,1R9BH@1224|Proteobacteria,2TQP7@28211|Alphaproteobacteria,3K40A@41294|Bradyrhizobiaceae
DescriptionBacterial extracellular solute-binding protein
Cds size513
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.3520968-CDS-P-wetherbeei_contig56874:2..5151683186844.3520968-CDS-P-wetherbeei_contig56874:2..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56874 3..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56874.1.1prot_P-wetherbeei_contig56874.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56874 3..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56874.1.1

>prot_P-wetherbeei_contig56874.1.1 ID=prot_P-wetherbeei_contig56874.1.1|Name=mRNA_P-wetherbeei_contig56874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
ERVAKRFTKVYPGIKCNVVRATGQVIYQRLSQDLKAKVANCDVFSSTDLG
QYVSLKAARQLLPFVPKNLADCSPLVAKFDADSAYTITDGNTTVMVYNGD
LVTAADAPKKWTDLIDPKWRNQVAVAHPGFSGAMGGWVLSMTNLYGWEYF
EKLKANRPQVGRSLIDPPTMV
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mRNA from alignment at P-wetherbeei_contig56874:3..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56874.1.1 ID=mRNA_P-wetherbeei_contig56874.1.1|Name=mRNA_P-wetherbeei_contig56874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56874:3..515+ (Phaeothamnion wetherbeei SAG_119_79)
GAACGCGTGGCTAAGCGCTTCACCAAAGTTTACCCGGGCATCAAATGCAA CGTCGTGCGTGCGACGGGCCAGGTGATCTATCAGCGGCTCAGTCAGGACC TGAAGGCGAAGGTCGCCAATTGCGACGTGTTTTCCTCCACCGATCTCGGC CAATACGTGTCGCTGAAGGCGGCCAGGCAGCTGCTGCCGTTCGTGCCGAA GAACCTCGCCGACTGTTCGCCGCTGGTCGCGAAGTTCGACGCCGACAGCG CCTACACCATAACCGACGGCAACACGACGGTGATGGTCTACAATGGCGAT CTGGTCACCGCGGCCGACGCGCCGAAGAAGTGGACCGACCTGATCGATCC GAAGTGGCGCAACCAGGTGGCGGTCGCGCATCCCGGATTCAGTGGGGCCA TGGGTGGCTGGGTGCTGTCGATGACCAACCTTTACGGCTGGGAGTATTTC GAGAAGCTGAAGGCCAATCGTCCACAGGTCGGACGCTCGCTCATCGATCC GCCGACGATGGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56874:3..515+

>mRNA_P-wetherbeei_contig56874.1.1 ID=mRNA_P-wetherbeei_contig56874.1.1|Name=mRNA_P-wetherbeei_contig56874.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56874:3..515+ (Phaeothamnion wetherbeei SAG_119_79)
GAACGCGTGGCTAAGCGCTTCACCAAAGTTTACCCGGGCATCAAATGCAA
CGTCGTGCGTGCGACGGGCCAGGTGATCTATCAGCGGCTCAGTCAGGACC
TGAAGGCGAAGGTCGCCAATTGCGACGTGTTTTCCTCCACCGATCTCGGC
CAATACGTGTCGCTGAAGGCGGCCAGGCAGCTGCTGCCGTTCGTGCCGAA
GAACCTCGCCGACTGTTCGCCGCTGGTCGCGAAGTTCGACGCCGACAGCG
CCTACACCATAACCGACGGCAACACGACGGTGATGGTCTACAATGGCGAT
CTGGTCACCGCGGCCGACGCGCCGAAGAAGTGGACCGACCTGATCGATCC
GAAGTGGCGCAACCAGGTGGCGGTCGCGCATCCCGGATTCAGTGGGGCCA
TGGGTGGCTGGGTGCTGTCGATGACCAACCTTTACGGCTGGGAGTATTTC
GAGAAGCTGAAGGCCAATCGTCCACAGGTCGGACGCTCGCTCATCGATCC
GCCGACGATGGTC
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