mRNA_P-wetherbeei_contig56873.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56873.1.1
Unique NamemRNA_P-wetherbeei_contig56873.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig56873.1.1 vs. uniprot
Match: A0A351MEU2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A351MEU2_9GAMM)

HSP 1 Score: 129 bits (325), Expect = 1.510e-33
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    1 LKVLPINSALHGVAATRGLRDLLQAQQGLTVGSETEANVPNLNSSVIAAIYQGRITDWTQLVHNGTQLNVPAAFSSEVYVVPRSPGAAIQA 273
            L V PIN ALHGV  T GLR+ LQ QQGL VGSETEAN+PNL+ + +A++YQGRI DWTQ+VHNG  L V   FSSEVY+VPR+PGAAIQA
Sbjct:  186 LVVKPINVALHGVIVTLGLRNALQQQQGLVVGSETEANIPNLSKAAVASLYQGRIADWTQIVHNGVPLQVAPGFSSEVYLVPRNPGAAIQA 276
[Close]
BLAST of mRNA_P-wetherbeei_contig56873.1.1 vs. uniprot
Match: A0A3L8B543_9GAMM (Uncharacterized protein n=6 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3L8B543_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-10
Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:    4 KVLPINSALHGVAATRGLRDLLQAQQGLTVGSETEANVPNLNSSVIAAIYQGRITDWTQLVHN-GTQLNVPAAFSS-EVYVVPRSPGAAIQA 273
            KV  +N+   GV A+ GLRD LQA QGL+VGS+   ++P+++S +IA ++ G++ +W+QL    G  ++  A  S+  V +  R+PG+  QA
Sbjct:  173 KVNTVNAQTFGVVASPGLRDALQAAQGLSVGSDEVQDMPSMSSDLIANLFSGKVANWSQLRDAAGLGIDASAGLSNGAVNICVRTPGSGTQA 264
[Close]
BLAST of mRNA_P-wetherbeei_contig56873.1.1 vs. uniprot
Match: UPI0019CE3419 (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019CE3419)

HSP 1 Score: 52.4 bits (124), Expect = 7.970e-6
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:    1 LKVLPINSALHGVAATRGLRDLLQAQQGLTVGSETEANVPNLNSSVIAAIYQGRITDWTQLVHNGTQLNVPAAFSSEVYVVPR 249
            L+   + S +  V  TR + ++LQAQQGLT+GS  EAN+P+L+ + I +++  +   W+ +    T L        EVYV  R
Sbjct:  195 LRAESLASVIFAVPVTRNIFEVLQAQQGLTIGSLDEANMPSLSQAQITSLFTQQQQTWSAITGQATGLA-----DDEVYVARR 272
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56873.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A351MEU2_9GAMM1.510e-3369.23Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A3L8B543_9GAMM2.700e-1039.13Uncharacterized protein n=6 Tax=Gammaproteobacteri... [more]
UPI0019CE34197.970e-634.94Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56873contigP-wetherbeei_contig56873:4..276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog864051.BurJ1DRAFT_0924
Model size273
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.34e-06
EggNOG OGs2DQC8@1|root,335WP@2|Bacteria,1PWR3@1224|Proteobacteria,2WC9R@28216|Betaproteobacteria,1KP65@119065|unclassified Burkholderiales
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186844.320093-CDS-P-wetherbeei_contig56873:3..2761683186844.320093-CDS-P-wetherbeei_contig56873:3..276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56873 4..276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56873.1.1prot_P-wetherbeei_contig56873.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56873 4..276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56873.1.1

>prot_P-wetherbeei_contig56873.1.1 ID=prot_P-wetherbeei_contig56873.1.1|Name=mRNA_P-wetherbeei_contig56873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
LKVLPINSALHGVAATRGLRDLLQAQQGLTVGSETEANVPNLNSSVIAAI
YQGRITDWTQLVHNGTQLNVPAAFSSEVYVVPRSPGAAIQA
back to top

mRNA from alignment at P-wetherbeei_contig56873:4..276-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56873.1.1 ID=mRNA_P-wetherbeei_contig56873.1.1|Name=mRNA_P-wetherbeei_contig56873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig56873:4..276- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGGTGCTGCCGATCAACTCTGCGCTGCACGGTGTAGCCGCGACCAG
GGGGCTGCGTGATCTGCTGCAGGCCCAACAGGGTTTGACGGTTGGCAGCG
AAACCGAAGCCAATGTCCCCAACCTCAACAGCTCAGTGATCGCCGCCATC
TACCAGGGCCGTATCACCGACTGGACGCAACTCGTGCACAACGGCACGCA
ACTGAATGTACCCGCCGCATTTTCCTCGGAAGTATATGTCGTCCCCCGTT
CGCCGGGCGCCGCCATTCAGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56873:4..276-

>mRNA_P-wetherbeei_contig56873.1.1 ID=mRNA_P-wetherbeei_contig56873.1.1|Name=mRNA_P-wetherbeei_contig56873.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig56873:4..276- (Phaeothamnion wetherbeei SAG_119_79)
CTCAAGGTGCTGCCGATCAACTCTGCGCTGCACGGTGTAGCCGCGACCAG
GGGGCTGCGTGATCTGCTGCAGGCCCAACAGGGTTTGACGGTTGGCAGCG
AAACCGAAGCCAATGTCCCCAACCTCAACAGCTCAGTGATCGCCGCCATC
TACCAGGGCCGTATCACCGACTGGACGCAACTCGTGCACAACGGCACGCA
ACTGAATGTACCCGCCGCATTTTCCTCGGAAGTATATGTCGTCCCCCGTT
CGCCGGGCGCCGCCATTCAGGCC
back to top