mRNA_P-wetherbeei_contig56847.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56847.1.1
Unique NamemRNA_P-wetherbeei_contig56847.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: A0A127EPT1_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EPT1_9HYPH)

HSP 1 Score: 135 bits (339), Expect = 5.540e-37
Identity = 66/118 (55.93%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISEIHSKGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGWQP 354
            AYTDPK G T+   L+KI++ FGI   V  KG+ ATGG+DA  KVA G+AE+ +  IS++H+K  ++   LP+A+QLWT+YAAAIPTSS +P +AR FV ALT   LRERW  AGW+P
Sbjct:  136 AYTDPKLGATSSTHLLKIAENFGIKDDVVRKGLLATGGNDAAEKVANGEAEIAIAPISDVHAKDARIAGALPEAIQLWTVYAAAIPTSSAEPKEARAFVTALTASTLRERWVKAGWEP 253          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: UPI001FBA6119 (substrate-binding domain-containing protein n=1 Tax=Methylobacterium sp. E-065 TaxID=2836583 RepID=UPI001FBA6119)

HSP 1 Score: 69.7 bits (169), Expect = 3.910e-12
Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISE-IHSKGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGW 348
            AY DPK GG+A      +    G T AV AK +  + G +    VA G+A + +   SE I + GV     LP+A+  WT YAAA+ T++  P+ AR F+A +TGP   ER   AGW
Sbjct:   88 AYIDPKGGGSAGAIFEGMLTRPGFTEAVQAKALLGSTGAEVAMAVASGRAAIGLKQASELIDAPGVAFAGFLPEAVNTWTPYAAAVTTTTRVPSAARAFIAFVTGPNGSERLKQAGW 204          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: UPI001AEB8807 (substrate-binding domain-containing protein n=5 Tax=unclassified Methylobacterium TaxID=2615210 RepID=UPI001AEB8807)

HSP 1 Score: 69.7 bits (169), Expect = 7.400e-12
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISE-IHSKGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGW 348
            AY DPK GG+A      +    G+  AV AK V    G +  + VA G+A + +   SE I + GV     LP+A+  WT YAAA+ T++  P+ AR F+A +TGP    R   AGW
Sbjct:  135 AYIDPKGGGSAGAFFDGMLTRLGLAEAVQAKVVLCATGAEVASAVASGRAAIGLTQASELIDAPGVAFAGFLPEAVNTWTPYAAAVTTTTQDPSAARAFIAFVTGPNGSARLKQAGW 251          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: A0A2V8DG46_9BACT (Molybdate ABC transporter substrate-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8DG46_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 2.470e-11
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISEIH-SKGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGWQP 354
            +Y +P  GGT+      +    GI  A+ AK V+   G +    VA+G+AEL +   SE+  +KGVK+   LP A+QL TIY+AAI T++ +   AR F+  L G   R  +T AG +P
Sbjct:  123 SYVNPASGGTSGTYFEGLLQRMGIADAMKAKIVYRMQGSEVADAVAKGEAELGITFSSELQPNKGVKVAGTLPAAIQLPTIYSAAIATTAERGDAARAFLHTLAGAGARAAFTKAGLEP 241          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: A0A6L5FTN7_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FTN7_9HYPH)

HSP 1 Score: 67.0 bits (162), Expect = 6.070e-11
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISE-IHSKGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGWQP 354
            A +DP  GG+A      +    GI  AV+ K +  + G      VA G+A++ + L+ E +  KGV   APLP ALQ +T Y AA+ T  T P     F+ A   P L   W AAG +P
Sbjct:  119 ACSDPAIGGSAGTHFAALLQRLGIEGAVSHKLLKRSSGVKTAEAVASGEADIGITLLPEMLPVKGVYPAAPLPQALQKFTTYVAAVSTQCTVPQTGAAFIRAAADPGLDSSWRAAGVEP 237          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: A0A3N5M5N9_9HYPH (ABC transporter substrate-binding protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5M5N9_9HYPH)

HSP 1 Score: 65.5 bits (158), Expect = 3.050e-10
Identity = 51/118 (43.22%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISEIHS-KGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGWQ 351
            AY DPK GG++     ++ D  GI A + AK     GG  A   VA G+A+L V  ISEI   KGV+LV PLP A+Q  TIYAA + +++ + A AR F+  L GPA     +A G +
Sbjct:  149 AYIDPKAGGSSGIYFDQLIDRLGIGADIRAKARLKAGGHVADL-VASGEADLAVHQISEILPVKGVRLVGPLPAAVQNVTIYAAGLGSAAKEAAAARAFLDYLAGPAAAAVLSAKGME 265          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: A0A2M6VSK0_9BURK (Uncharacterized protein n=1 Tax=Limnohabitans sp. 15K TaxID=1100706 RepID=A0A2M6VSK0_9BURK)

HSP 1 Score: 63.2 bits (152), Expect = 1.960e-9
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISEIHS-KGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALR 324
            AY DP  GG++   L ++    G+   V AK V   GG  A  ++  G+A+L +  ISEI   KG +LVAPLP+A+Q +T+YAAA+     Q   A+DF+  L  PA R
Sbjct:  137 AYIDPAAGGSSGIYLDQLFKKMGLFDMVQAKAVLVPGGLVAD-RLVSGQADLAIHQISEILPVKGAQLVAPLPEAIQNYTVYAAALSAQGAQRKAAQDFLNLLASPAAR 244          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: UPI000FDD8E88 (substrate-binding domain-containing protein n=1 Tax=Piscinibacter defluvii TaxID=1796922 RepID=UPI000FDD8E88)

HSP 1 Score: 62.0 bits (149), Expect = 3.960e-9
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   43 LIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISEI-HSKGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGWQPA 357
            LIK+ + +GI  AV A+ V A  G    + VA G+AEL V  +SE+ +  G++++ PLP+A+Q+ TI+AAA+  SSTQ   AR  +A L  P         G +PA
Sbjct:  123 LIKLFERWGIAEAVKARLVQARPGVPVASLVASGEAELGVQQLSELLNVPGIEILGPLPEAIQIETIFAAAVCRSSTQVDAARALLAFLAAPETAATKRRHGMEPA 228          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: UPI00131C5D4B (substrate-binding domain-containing protein n=1 Tax=Burkholderia sp. L27(2015) TaxID=1641858 RepID=UPI00131C5D4B)

HSP 1 Score: 61.6 bits (148), Expect = 7.730e-9
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   10 DPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISEIHS-KGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVAALTGPALRERWTAAGWQP 354
            DP  G T+   L K+ D  G+T A+ AK  +   G  A+  +A+G+  L +   SEI    GV LV P+P+ LQL TIYAA I +  +    A+ F A +TG  +R    A G+ P
Sbjct:  148 DPASGATSGIYLAKLMDRLGVTEAIRAKVKYYPEGQTAMEAMAKGEVTLGIGQTSEIMPVHGVTLVGPIPENLQLKTIYAAGIASKDSSQVLAQKFRAYVTGAQVRASLKANGFDP 263          
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Match: A0A2V8MJA0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8MJA0_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 8.510e-9
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKAELTVVLISE-IHSKGVKLVAPLPDALQLWTIYAAAIPTSS 267
            +Y DPK GGT+   +  +    GI   + +K V    G +    VA+G AE+ +   SE I +KGVKL   LPDA+QL TIYA A+P  +
Sbjct:   24 SYVDPKAGGTSGTYIAGLFQKMGIAQEMQSKTVFRNQGSEVADAVAKGDAEIGITFTSEMITNKGVKLAGTLPDAIQLPTIYAGAVPAGA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EPT1_9HYPH5.540e-3755.93ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI001FBA61193.910e-1240.17substrate-binding domain-containing protein n=1 Ta... [more]
UPI001AEB88077.400e-1239.32substrate-binding domain-containing protein n=5 Ta... [more]
A0A2V8DG46_9BACT2.470e-1138.66Molybdate ABC transporter substrate-binding protei... [more]
A0A6L5FTN7_9HYPH6.070e-1136.97Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A3N5M5N9_9HYPH3.050e-1043.22ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A2M6VSK0_9BURK1.960e-941.28Uncharacterized protein n=1 Tax=Limnohabitans sp. ... [more]
UPI000FDD8E883.960e-940.57substrate-binding domain-containing protein n=1 Ta... [more]
UPI00131C5D4B7.730e-937.93substrate-binding domain-containing protein n=1 Ta... [more]
A0A2V8MJA0_9BACT8.510e-941.11Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56847contigP-wetherbeei_contig56847:153..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1038858.AXBA01000067_gene1365
PFAMsSBP_bac_11
Model size363
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00668
KEGG koko:K02020,ko:K22003
KEGG TC3.A.1.8
KEGG ReactionR02244
KEGG Pathwayko00660,ko02010,map00660,map02010
KEGG ModuleM00189
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.96e-10
EggNOG OGsCOG0725@1|root,COG0725@2|Bacteria,1RCHM@1224|Proteobacteria,2VGBX@28211|Alphaproteobacteria,3F2CK@335928|Xanthobacteraceae
EC5.3.3.7
DescriptionBacterial extracellular solute-binding protein
Cds size363
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.9640946-CDS-P-wetherbeei_contig56847:152..5151683186843.9640946-CDS-P-wetherbeei_contig56847:152..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56847 153..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56847.1.1prot_P-wetherbeei_contig56847.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56847 153..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56847.1.1

>prot_P-wetherbeei_contig56847.1.1 ID=prot_P-wetherbeei_contig56847.1.1|Name=mRNA_P-wetherbeei_contig56847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
AYTDPKFGGTAYGQLIKISDAFGITAAVTAKGVHATGGDDAVAKVAEGKA
ELTVVLISEIHSKGVKLVAPLPDALQLWTIYAAAIPTSSTQPAQARDFVA
ALTGPALRERWTAAGWQPAR*
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mRNA from alignment at P-wetherbeei_contig56847:153..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56847.1.1 ID=mRNA_P-wetherbeei_contig56847.1.1|Name=mRNA_P-wetherbeei_contig56847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig56847:153..515- (Phaeothamnion wetherbeei SAG_119_79)
GCCTACACCGATCCGAAGTTCGGCGGCACTGCCTACGGGCAACTCATCAA GATCTCGGATGCGTTCGGCATCACTGCCGCGGTCACCGCGAAGGGCGTGC ATGCTACCGGCGGCGACGACGCGGTGGCGAAGGTGGCCGAGGGCAAGGCA GAACTCACGGTCGTGCTGATCAGCGAAATTCACTCAAAGGGCGTCAAGCT GGTGGCGCCGCTGCCCGACGCGTTGCAGCTCTGGACAATCTACGCCGCCG CCATTCCAACGAGCAGCACCCAGCCCGCGCAAGCCCGCGATTTCGTGGCG GCCCTCACCGGCCCGGCCTTGCGCGAGCGATGGACCGCCGCCGGCTGGCA GCCGGCGAGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56847:153..515-

>mRNA_P-wetherbeei_contig56847.1.1 ID=mRNA_P-wetherbeei_contig56847.1.1|Name=mRNA_P-wetherbeei_contig56847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig56847:153..515- (Phaeothamnion wetherbeei SAG_119_79)
GCCTACACCGATCCGAAGTTCGGCGGCACTGCCTACGGGCAACTCATCAA
GATCTCGGATGCGTTCGGCATCACTGCCGCGGTCACCGCGAAGGGCGTGC
ATGCTACCGGCGGCGACGACGCGGTGGCGAAGGTGGCCGAGGGCAAGGCA
GAACTCACGGTCGTGCTGATCAGCGAAATTCACTCAAAGGGCGTCAAGCT
GGTGGCGCCGCTGCCCGACGCGTTGCAGCTCTGGACAATCTACGCCGCCG
CCATTCCAACGAGCAGCACCCAGCCCGCGCAAGCCCGCGATTTCGTGGCG
GCCCTCACCGGCCCGGCCTTGCGCGAGCGATGGACCGCCGCCGGCTGGCA
GCCGGCGAGGTAG
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