mRNA_P-wetherbeei_contig56844.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56844.1.1
Unique NamemRNA_P-wetherbeei_contig56844.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: UPI00093183D7 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI00093183D7)

HSP 1 Score: 142 bits (357), Expect = 8.440e-39
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 1
Query:   28 SAAAVLLLLATSADAQRARRGGAPADTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQAF 342
            +AAA L L +TS +AQR RRG A  + +VSVY+VKTEPV ER+AAVGSGRA  QVT+TTRVAGVISEV+FKGGD+VEK QVLV+LASEPEAIAVETA+AQRAQAF
Sbjct:   21 AAAASLTLASTSTEAQRTRRGPAT-EPIVSVYEVKTEPVRERVAAVGSGRALAQVTLTTRVAGVISEVLFKGGDRVEKDQVLVRLASEPEAIAVETAEAQRAQAF 124          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: A0A2W4QXI5_9PROT (Efflux transporter periplasmic adaptor subunit n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4QXI5_9PROT)

HSP 1 Score: 118 bits (296), Expect = 8.610e-30
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1
Query:   28 SAAAVLLLLATSADAQRARRGGAPADTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQAF 342
            +A  V+L L + A+AQR  R  A  D VVSVY+V+ E ++ER+ AVGSGRA++Q+T+TTRVAGVI+EV+FKGGDKVE GQ LVKL SEPE IAVE A+AQRA+AF
Sbjct:   22 TAGLVILGLFSPAEAQRRPRT-ADGDPVVSVYEVRLERINERVDAVGSGRARQQITLTTRVAGVIAEVLFKGGDKVEAGQPLVKLNSEPEEIAVEMAEAQRAEAF 125          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: A0A2S5MAP9_HYPSQ (Efflux transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MAP9_HYPSQ)

HSP 1 Score: 115 bits (288), Expect = 1.520e-28
Identity = 65/103 (63.11%), Postives = 83/103 (80.58%), Query Frame = 1
Query:   43 LLLLATSADAQRA----RRGGAPADTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQA 339
            LLLLA +A A  A    RRGGA     +++ D+K E +++R+AAVGSGRA++QVT+TTR AGVI+EV+F+GGDKVE GQ L++L SEPEAIAVETA+AQRAQA
Sbjct:   33 LLLLAVTAFASDALAQRRRGGADTAPAITLVDIKMERLNDRVAAVGSGRARQQVTLTTRNAGVIAEVLFEGGDKVEVGQALIRLNSEPEAIAVETAEAQRAQA 135          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: V5SAP0_9HYPH (Secretion protein HylD n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SAP0_9HYPH)

HSP 1 Score: 110 bits (276), Expect = 3.670e-27
Identity = 56/80 (70.00%), Postives = 70/80 (87.50%), Query Frame = 1
Query:  103 DTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQAF 342
            D VVS Y+V+T P  ER+AAVGSGRA++QVT+TTRVAGVI +V+F+GGDKVE GQ L++L+SE EAIAVE+A+AQR QAF
Sbjct:    5 DPVVSTYEVRTAPAIERVAAVGSGRARQQVTLTTRVAGVIEDVLFQGGDKVEAGQPLIRLSSEQEAIAVESAEAQRQQAF 84          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: A0A6I3KP06_9HYPH (Efflux RND transporter periplasmic adaptor subunit n=2 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KP06_9HYPH)

HSP 1 Score: 108 bits (269), Expect = 9.240e-26
Identity = 67/108 (62.04%), Postives = 81/108 (75.00%), Query Frame = 1
Query:   16 LALASAAAVLLLLATSADAQRARRGGAPADTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQA 339
            L L  A A  L  A+ A AQRA RG  PA   V++ DVK E ++ER+AAVGS RA++QVT+TTRVAGVISEV+F+GG  V+  Q LVKL +EPE IAVETA+AQRAQA
Sbjct:   34 LGLVVALAGFLFPASIAQAQRAPRG--PAAPTVTLTDVKVERMNERVAAVGSARARQQVTLTTRVAGVISEVLFQGGQLVDANQPLVKLNAEPEKIAVETAEAQRAQA 139          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: N0BEK1_9HYPH (HlyD family secretion protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 TaxID=670307 RepID=N0BEK1_9HYPH)

HSP 1 Score: 97.1 bits (240), Expect = 1.170e-21
Identity = 59/97 (60.82%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   55 ATSADAQRARRGG--APADTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQA 339
            A+   AQRA + G   PA   V++ DVK E ++ER+AAVGSGRA++QVT+TTRVAGVI +V+F+GG  VE  Q LVKL ++ EAIAVETA AQRAQA
Sbjct:   31 ASEGSAQRAGKRGDILPA---VTLSDVKIERMNERVAAVGSGRARQQVTLTTRVAGVIDQVLFEGGQLVEANQALVKLNADTEAIAVETAQAQRAQA 124          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: A0A0D6JIX1_9HYPH (HlyD family secretion protein n=2 Tax=Filomicrobium TaxID=119044 RepID=A0A0D6JIX1_9HYPH)

HSP 1 Score: 93.2 bits (230), Expect = 3.130e-20
Identity = 47/77 (61.04%), Postives = 62/77 (80.52%), Query Frame = 1
Query:  112 VSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQAF 342
            ++  DV   P ++R+AAVGS RA+++VT+T RVAGV+S+V F+GG KV   + L+KL SEPEAIAVETA+AQRAQAF
Sbjct:   48 ITFVDVSMRPRNDRVAAVGSSRARQEVTLTARVAGVVSDVFFEGGSKVSADEPLLKLLSEPEAIAVETAEAQRAQAF 124          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: A0A2N5XTH1_9HYPH (HlyD_D23 domain-containing protein n=2 Tax=Cohaesibacter celericrescens TaxID=2067669 RepID=A0A2N5XTH1_9HYPH)

HSP 1 Score: 66.6 bits (161), Expect = 1.720e-10
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   82 RRGGAPADTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADAQRAQAF 342
            RR GA A T V++ DV+ EP  +  +++G+G AQ+ VT+ + V+G I EV+F G  +V KG  L+KL  E + I VE A AQ ++A 
Sbjct:   91 RRRGAEA-TFVTLADVEVEPYEDSYSSIGTGVAQQSVTLVSEVSGQIKEVLFDGTSRVSKGDELIKLEDESQRINVEIAQAQLSKAL 176          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: UPI0009FF2D85 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Rubritepida flocculans TaxID=182403 RepID=UPI0009FF2D85)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-9
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   43 LLLLATSADAQR-ARRGGAPADTV-VSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLAS 288
            L LL   A AQR A RGG P   V V V  V+   V ERI +VG+ RA+E VT+TT+VAG+++ V F+ G +V +GQVL++L S
Sbjct:   33 LALLGLEAPAQRQAPRGGPPGGQVPVVVAPVRIGEVVERIESVGTVRAREAVTITTKVAGIVTAVRFEEGQRVREGQVLLELDS 116          
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Match: UPI00174964A9 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Kordiimonas sediminis TaxID=1735581 RepID=UPI00174964A9)

HSP 1 Score: 63.2 bits (152), Expect = 2.660e-9
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   37 AVLLLLATSADAQRARRGGAPADTVVSVYDVKTEPVSERIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEAIAVETADA 324
            AV L  A S DA R + GG      V V DV +   S+ + A+G+ +A E VT+T+RV+  +S+V+F  G  V+KG +LVKL S  E   V  A A
Sbjct:   19 AVYLFTADSKDAARGQFGGRM--VTVEVADVTSREFSDIVEALGTAKAHESVTLTSRVSDTVSDVLFNDGQHVKKGDILVKLTSLEEEAQVHEAQA 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56844.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00093183D78.440e-3976.19efflux RND transporter periplasmic adaptor subunit... [more]
A0A2W4QXI5_9PROT8.610e-3064.76Efflux transporter periplasmic adaptor subunit n=1... [more]
A0A2S5MAP9_HYPSQ1.520e-2863.11Efflux transporter periplasmic adaptor subunit n=1... [more]
V5SAP0_9HYPH3.670e-2770.00Secretion protein HylD n=2 Tax=Hyphomicrobium TaxI... [more]
A0A6I3KP06_9HYPH9.240e-2662.04Efflux RND transporter periplasmic adaptor subunit... [more]
N0BEK1_9HYPH1.170e-2160.82HlyD family secretion protein n=1 Tax=Hyphomicrobi... [more]
A0A0D6JIX1_9HYPH3.130e-2061.04HlyD family secretion protein n=2 Tax=Filomicrobiu... [more]
A0A2N5XTH1_9HYPH1.720e-1043.68HlyD_D23 domain-containing protein n=2 Tax=Cohaesi... [more]
UPI0009FF2D851.040e-950.00efflux RND transporter periplasmic adaptor subunit... [more]
UPI00174964A92.660e-941.67efflux RND transporter periplasmic adaptor subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56844contigP-wetherbeei_contig56844:172..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog670307.HYPDE_34243
PFAMsHlyD_D23
Model size342
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03585
KEGG TC2.A.6.2,8.A.1.6
KEGG Pathwayko01501,ko01503,map01501,map01503
KEGG ModuleM00646,M00647,M00699,M00718
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.91e-22
EggNOG OGsCOG0845@1|root,COG0845@2|Bacteria,1MW65@1224|Proteobacteria,2VET4@28211|Alphaproteobacteria
DescriptionBelongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Cds size342
COG categoryM
BRITEko00000,ko00001,ko00002,ko01504,ko02000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.9040055-CDS-P-wetherbeei_contig56844:171..5131683186843.9040055-CDS-P-wetherbeei_contig56844:171..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56844 172..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56844.1.1prot_P-wetherbeei_contig56844.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56844 172..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56844.1.1

>prot_P-wetherbeei_contig56844.1.1 ID=prot_P-wetherbeei_contig56844.1.1|Name=mRNA_P-wetherbeei_contig56844.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
PGALPLALASAAAVLLLLATSADAQRARRGGAPADTVVSVYDVKTEPVSE
RIAAVGSGRAQEQVTMTTRVAGVISEVMFKGGDKVEKGQVLVKLASEPEA
IAVETADAQRAQAF
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mRNA from alignment at P-wetherbeei_contig56844:172..513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56844.1.1 ID=mRNA_P-wetherbeei_contig56844.1.1|Name=mRNA_P-wetherbeei_contig56844.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig56844:172..513+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGGCGCCCTCCCCCTTGCGCTCGCGTCGGCGGCGGCCGTGTTGTTGCT GCTGGCCACCAGCGCCGACGCACAGCGCGCGCGGCGAGGCGGCGCACCCG CCGATACCGTCGTCTCCGTCTATGACGTCAAGACCGAGCCCGTGAGCGAG CGCATCGCCGCCGTTGGCTCCGGCCGCGCCCAGGAACAGGTCACGATGAC GACACGCGTCGCCGGCGTCATCTCAGAAGTGATGTTCAAAGGCGGTGACA AAGTCGAGAAAGGCCAAGTGCTGGTGAAGCTCGCGTCCGAGCCCGAGGCC ATTGCTGTCGAAACGGCCGACGCCCAGCGCGCCCAGGCATTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56844:172..513+

>mRNA_P-wetherbeei_contig56844.1.1 ID=mRNA_P-wetherbeei_contig56844.1.1|Name=mRNA_P-wetherbeei_contig56844.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig56844:172..513+ (Phaeothamnion wetherbeei SAG_119_79)
CCTGGCGCCCTCCCCCTTGCGCTCGCGTCGGCGGCGGCCGTGTTGTTGCT
GCTGGCCACCAGCGCCGACGCACAGCGCGCGCGGCGAGGCGGCGCACCCG
CCGATACCGTCGTCTCCGTCTATGACGTCAAGACCGAGCCCGTGAGCGAG
CGCATCGCCGCCGTTGGCTCCGGCCGCGCCCAGGAACAGGTCACGATGAC
GACACGCGTCGCCGGCGTCATCTCAGAAGTGATGTTCAAAGGCGGTGACA
AAGTCGAGAAAGGCCAAGTGCTGGTGAAGCTCGCGTCCGAGCCCGAGGCC
ATTGCTGTCGAAACGGCCGACGCCCAGCGCGCCCAGGCATTC
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