mRNA_P-wetherbeei_contig56816.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56816.1.1
Unique NamemRNA_P-wetherbeei_contig56816.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Match: A0A6J4UDV8_9CHLR (Uncharacterized protein n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UDV8_9CHLR)

HSP 1 Score: 127 bits (319), Expect = 1.580e-33
Identity = 61/112 (54.46%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPRWGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRLYGAALGIVNGVV 336
            M+QSIVLDGL++LI++++  +G+ RGGMRE+C+AAGLL    +AD WA RWG W+ADR D+  G   F+V VA LT+VT V GYGA   F  RPGPGGR+YG  + ++ G +
Sbjct:    1 MVQSIVLDGLLLLILMLLLPLGFFRGGMREVCSAAGLLLALLIADEWADRWGRWIADRVDVRSGIAQFVVAVAVLTIVTAVVGYGAGAGFSYRPGPGGRIYGGLIALLIGAL 112          
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Match: A0A7V9AK14_9CHLR (CvpA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9AK14_9CHLR)

HSP 1 Score: 126 bits (316), Expect = 4.880e-33
Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    1 MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPRWGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRLYGAALGIVNGVV 336
            M+QSIVLD L++LI++++  +G+ RGGMRE+C+AAGLL G  + + WA RWG+WVA R D+  G   F+V V  LT+VT + GYGAA  F SRPGPGGR+YG  + ++ G V
Sbjct:    1 MVQSIVLDALLLLILMLLVPLGFYRGGMREVCSAAGLLLGLLITNEWAERWGSWVASRVDVRTGVSQFVVAVTVLTLVTALVGYGAAAGFSSRPGPGGRMYGGLIALLTGAV 112          
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Match: A0A838GGA8_9CHLR (CvpA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GGA8_9CHLR)

HSP 1 Score: 111 bits (278), Expect = 1.760e-27
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPRWGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRLYGAALGIVNGVV 336
            M++S+ LD L++LI+L++  IG+ RGG+RE+C+AAG+L G  +A  W+ RWGAWVAD   + +G   F+V VA L +   + GYGAA AF + P PGGRLYG  + +  GV+
Sbjct:    1 MVESLALDSLLILILLLLVPIGFYRGGLREVCSAAGVLLGLLVAQQWSARWGAWVADVTGIDEGISRFMVAVATLILFAALIGYGAASAFTASPSPGGRLYGGLIALAYGVL 112          
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Match: A0A7W0QRB0_9CHLR (CvpA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0QRB0_9CHLR)

HSP 1 Score: 109 bits (273), Expect = 9.600e-27
Identity = 52/110 (47.27%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPRWGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRLYGAALGIVNG 330
            M++S+ LD L++LI+L++  IG+ RGG+RE+C+AAG+L G  +A  W+PRWG+WVA    + +G   F+V +A L +   + GYGAA AF S P PGGRLYG  + + +G
Sbjct:    1 MLESLALDSLLILILLLLVPIGFYRGGLREVCSAAGVLLGLLVAQQWSPRWGSWVAGVTGIDEGISRFMVAMATLVLFAALIGYGAASAFTSSPSPGGRLYGGLVALASG 110          
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Match: A0A7W0STN8_9CHLR (CvpA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0STN8_9CHLR)

HSP 1 Score: 107 bits (268), Expect = 5.210e-26
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPRWGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRLYGAALGIVNGVV 336
            M++++ LD L++LI+L++  IG  RGG+RE+C+AAG+L G  +A  WA RWG W+AD   + DG   F+V VA L +   + GY AA AF   PGPGGRLYG  + + +GV+
Sbjct:    1 MLETLALDSLLILILLLLMPIGLYRGGLREVCSAAGVLLGLIVAQQWADRWGGWLADTTGIDDGVSRFMVAVAILVLFAGLIGYAAASAFAYSPGPGGRLYGGLIALASGVL 112          
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Match: A0A7W0AAZ2_9CHLR (CvpA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0AAZ2_9CHLR)

HSP 1 Score: 101 bits (251), Expect = 1.510e-23
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPRWGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRLYGAALGIVNGVV 336
            M++++ LD L++LI+L++  IG  RGG+RE+C+AAG+L G  +A  W+ RWG W+A    + DG   F V VA + V   + GYGA  +F   PGPGGR++G  + + +GVV
Sbjct:    1 MLETLALDSLLILILLLLIPIGMYRGGLREVCSAAGVLLGLLVAMQWSDRWGGWLAGATGIDDGVARFAVAVATIVVFAGLLGYGATSSFAYSPGPGGRVFGGLIALASGVV 112          
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Match: A0A7W0A5B9_9CHLR (CvpA family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A5B9_9CHLR)

HSP 1 Score: 96.3 bits (238), Expect = 7.930e-22
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPRWGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRLYGAALGIVNGVV 336
            MI+SIVLD L++LI+ ++ AIG  RGGMRE  +A GLL G  +A  W   WG W+A    LSDG   F+  V  +T+ T+V GY    AF   PGPGGRL+G  L    G+V
Sbjct:    1 MIESIVLDILLMLIVFLMMAIGAYRGGMREAFSAGGLLLGVLVATEWLEPWGRWLARNTSLSDGGARFLAAVVTMTLFTVVVGYAVGSAFNYHPGPGGRLFGTVLAGGAGLV 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56816.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6J4UDV8_9CHLR1.580e-3354.46Uncharacterized protein n=1 Tax=uncultured Thermom... [more]
A0A7V9AK14_9CHLR4.880e-3353.57CvpA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A838GGA8_9CHLR1.760e-2748.21CvpA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A7W0QRB0_9CHLR9.600e-2747.27CvpA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A7W0STN8_9CHLR5.210e-2647.32CvpA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A7W0AAZ2_9CHLR1.510e-2343.75CvpA family protein n=1 Tax=Chloroflexia bacterium... [more]
A0A7W0A5B9_9CHLR7.930e-2248.21CvpA family protein n=1 Tax=Chloroflexia bacterium... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56816contigP-wetherbeei_contig56816:177..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog309801.trd_0045
PFAMsColicin_V
Model size339
Max annot lvl189775|Thermomicrobia
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.81e-13
EggNOG OGsCOG1286@1|root,COG1286@2|Bacteria,2G9FV@200795|Chloroflexi,27Y7E@189775|Thermomicrobia
DescriptionColicin V production protein
Cds size339
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.7963665-CDS-P-wetherbeei_contig56816:176..5151683186843.7963665-CDS-P-wetherbeei_contig56816:176..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56816 177..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56816.1.1prot_P-wetherbeei_contig56816.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56816 177..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56816.1.1

>prot_P-wetherbeei_contig56816.1.1 ID=prot_P-wetherbeei_contig56816.1.1|Name=mRNA_P-wetherbeei_contig56816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MIQSIVLDGLIVLIILMIAAIGYNRGGMRELCTAAGLLFGSRLADAWAPR
WGAWVADRADLSDGAGTFIVYVAALTVVTLVCGYGAALAFFSRPGPGGRL
YGAALGIVNGVVL
back to top

mRNA from alignment at P-wetherbeei_contig56816:177..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56816.1.1 ID=mRNA_P-wetherbeei_contig56816.1.1|Name=mRNA_P-wetherbeei_contig56816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig56816:177..515+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCAGAGCATCGTTCTCGACGGCCTGATCGTCCTCATCATCCTCAT GATCGCCGCCATCGGCTACAACCGGGGCGGGATGCGTGAGCTCTGCACCG CCGCCGGCCTCCTCTTCGGCAGCCGCCTGGCCGACGCCTGGGCGCCGCGC TGGGGCGCATGGGTGGCGGATCGGGCCGACCTCTCCGATGGGGCCGGGAC CTTCATCGTCTACGTGGCGGCCCTGACGGTAGTCACGCTGGTGTGTGGCT ACGGCGCGGCGCTCGCGTTCTTCTCGCGGCCCGGACCGGGCGGCAGGCTC TATGGGGCCGCGCTCGGGATCGTCAACGGCGTCGTCCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56816:177..515+

>mRNA_P-wetherbeei_contig56816.1.1 ID=mRNA_P-wetherbeei_contig56816.1.1|Name=mRNA_P-wetherbeei_contig56816.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig56816:177..515+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCAGAGCATCGTTCTCGACGGCCTGATCGTCCTCATCATCCTCAT
GATCGCCGCCATCGGCTACAACCGGGGCGGGATGCGTGAGCTCTGCACCG
CCGCCGGCCTCCTCTTCGGCAGCCGCCTGGCCGACGCCTGGGCGCCGCGC
TGGGGCGCATGGGTGGCGGATCGGGCCGACCTCTCCGATGGGGCCGGGAC
CTTCATCGTCTACGTGGCGGCCCTGACGGTAGTCACGCTGGTGTGTGGCT
ACGGCGCGGCGCTCGCGTTCTTCTCGCGGCCCGGACCGGGCGGCAGGCTC
TATGGGGCCGCGCTCGGGATCGTCAACGGCGTCGTCCTC
back to top