mRNA_P-wetherbeei_contig56805.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56805.1.1
Unique NamemRNA_P-wetherbeei_contig56805.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: A0A5P6NZ34_9BRAD (Energy transducer TonB n=6 Tax=Bradyrhizobium TaxID=374 RepID=A0A5P6NZ34_9BRAD)

HSP 1 Score: 265 bits (676), Expect = 4.910e-87
Identity = 144/171 (84.21%), Postives = 150/171 (87.72%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLVKAAELSVRMTLDRLGHV 513
            GGAALALAYLRN+EPDFIADPQGIEVGLE+MSPNGEPSELPPGPDSNESVASPELT+QKAELKESSLPKDVPMEV +ADRAVT+NETKKPVEEE              XXXX     TSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGL KAAELSVR+TLDRLGHV
Sbjct:   26 GGAALALAYLRNEEPDFIADPQGIEVGLESMSPNGEPSELPPGPDSNESVASPELTQQKAELKESSLPKDVPMEVEEADRAVTLNETKKPVEEETKESVVPTAASVASXXXXATAMPTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLFKAAELSVRLTLDRLGHV 196          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: A0A0D7PQ87_9BRAD (Energy transducer TonB n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A0D7PQ87_9BRAD)

HSP 1 Score: 260 bits (664), Expect = 2.280e-85
Identity = 146/171 (85.38%), Postives = 149/171 (87.13%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLVKAAELSVRMTLDRLGHV 513
            GGAALALA LR DEPD IADPQGIEVGLE MSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKD+PME  DADRAVTMNETKKPVEEE              XXXXXXX  TSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGL+KAAELSVR+TLDRLGHV
Sbjct:   26 GGAALALANLRGDEPDVIADPQGIEVGLEAMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDIPMEAEDADRAVTMNETKKPVEEETKESVVPTAASVASXXXXXXXMPTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLLKAAELSVRLTLDRLGHV 196          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: UPI0020016415 (TonB family protein n=1 Tax=Bradyrhizobium sp. 186 TaxID=2782654 RepID=UPI0020016415)

HSP 1 Score: 251 bits (640), Expect = 1.450e-81
Identity = 134/171 (78.36%), Postives = 139/171 (81.29%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLVKAAELSVRMTLDRLGHV 513
            GGAALALA LR DE DFIADPQGIEVGLE MSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKD+P E  +ADRAV +NETKKPVEE+                       TSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGL KAAELSVR+TLDRLGHV
Sbjct:   26 GGAALALANLRGDEQDFIADPQGIEVGLEAMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDIPTETEEADRAVALNETKKPVEEDIKTPAVPTNASVASPAAEATAMPTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLFKAAELSVRLTLDRLGHV 196          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: UPI001BADD865 (TonB family protein n=2 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001BADD865)

HSP 1 Score: 238 bits (608), Expect = 9.480e-77
Identity = 151/171 (88.30%), Postives = 158/171 (92.40%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLVKAAELSVRMTLDRLGHV 513
            GGAA+A+A LR +E DFIADPQGIEVGL +MSPNGEPSELPPGPDSNESVASPEL EQK ELKESSLPKD+PME  +ADRAVT NETKKPVEE XXXXXXXXXXXXXXXXXXXXXXX  DAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGL KAAELSVR+TLDRLGHV
Sbjct:   26 GGAAVAIANLRGEEQDFIADPQGIEVGLVSMSPNGEPSELPPGPDSNESVASPELAEQKEELKESSLPKDLPMEAEEADRAVTQNETKKPVEEXXXXXXXXXXXXXXXXXXXXXXXXXXDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYPKGLFKAAELSVRLTLDRLGHV 196          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: UPI0015603ECF (TonB family protein n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=UPI0015603ECF)

HSP 1 Score: 145 bits (366), Expect = 2.530e-40
Identity = 88/183 (48.09%), Postives = 112/183 (61.20%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSV-----------RIRQGWEKDLVAHLDRHKRYP-KGLVKAAELSVRMTLDRLGHV 513
            GGAALA+A+L+ DEP+       IEVGLE  S   E ++LP GPD++ S+ASP+L EQKAELKE+ LP+D P E  +ADR VT NE+KKP E++                       +SDA  +  RS+           RIR  W+K+LVAHLD+HKRYP +   KAAE+ VR TLDRLGHV
Sbjct:   12 GGAALAIAHLQTDEPEDSVGANAIEVGLELASVRRETTDLPAGPDTDASMASPQLAEQKAELKETELPQDKPTETDEADRVVTPNESKKPKEDDPKVAAVQTTASTESVAAEATATPSSDAIPEGPRSIAPAIGTGETARRIRATWQKELVAHLDKHKRYPSERQQKAAEIYVRFTLDRLGHV 194          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: UPI0017F2CB8B (Energy transducer TonB n=1 Tax=Rhodopseudomonas sp. TaxID=1078 RepID=UPI0017F2CB8B)

HSP 1 Score: 145 bits (366), Expect = 3.850e-40
Identity = 87/182 (47.80%), Postives = 109/182 (59.89%), Query Frame = 1
Query:    4 GAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSV-----------RIRQGWEKDLVAHLDRHKRYPKG-LVKAAELSVRMTLDRLGHV 513
            GAALA+A+L+ND+ D       IE+GLE MSP  EPS+LPPGPD+  S ASP + EQKAE+KE+ LPKDVP E    DR VT +++ KP EE+                       +S+A K+ +RSV           RIR  W+K LVAHLD+HKRYP G   K+ E+ V  TLDRLGHV
Sbjct:   29 GAALAVAHLQNDDLDESLGAPAIEIGLEMMSPRLEPSDLPPGPDTEASTASPAVAEQKAEVKETDLPKDVPTESETPDRVVTTDDSNKPKEEQQEKAAVQRSASTESVAAEATAMPSSEAAKQGERSVAPAQGSGDSARRIRATWQKQLVAHLDKHKRYPAGGAQKSTEIVVSFTLDRLGHV 210          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: UPI001BA77595 (TonB C-terminal domain-containing protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA77595)

HSP 1 Score: 144 bits (363), Expect = 3.920e-40
Identity = 86/183 (46.99%), Postives = 110/183 (60.11%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSV-----------RIRQGWEKDLVAHLDRHKRYP-KGLVKAAELSVRMTLDRLGHV 513
            GGAALA+  L+ DEPD       IEVG+E  + + E ++LPPGPD++ SVASP+L EQKAE+KE+ LPKD P E  +ADR VT N+ KKP EEE                       +S+   +  +SV           RIR  W+K+L+AHLD+HKRYP    +K AE+SVR TLDRLGHV
Sbjct:   26 GGAALAITNLQADEPDDALGASAIEVGVELAAVHREVTDLPPGPDTDASVASPQLAEQKAEVKETDLPKDTPTETEEADRVVTENDNKKPKEEEQKVAAVQTSASQESVAAEATATPSSEVIPEGPKSVAPALGTGEAARRIRATWQKELMAHLDKHKRYPINRALKTAEISVRFTLDRLGHV 208          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: A0A1H0RT74_9BRAD (Outer membrane transport energization protein TonB n=2 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0RT74_9BRAD)

HSP 1 Score: 145 bits (365), Expect = 5.450e-40
Identity = 87/183 (47.54%), Postives = 112/183 (61.20%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSV-----------RIRQGWEKDLVAHLDRHKRYP-KGLVKAAELSVRMTLDRLGHV 513
            GGAALA+A+L+ DEP+       IEVGLE  S   E ++LPPGPD++ S ASP+L EQKAE+K++ LP+D P E  +ADR VT NE+KKP E++                       +SDA  +  RSV           R+R  W+K+LVAHLD+HKRYP +   KAAE+ VR TLDRLGHV
Sbjct:   27 GGAALAIAHLQTDEPEDSLGANAIEVGLELASVRREATDLPPGPDTDASAASPQLAEQKAEVKDTELPQDKPTETDEADRVVTPNESKKPREDDPKIAAVQTQASTESVAAEATATPSSDAIPEGTRSVAPAIGAGESAQRVRATWQKELVAHLDKHKRYPSERQQKAAEIYVRFTLDRLGHV 209          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: A0A1B1USZ9_9BRAD (Energy transducer TonB n=7 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1USZ9_9BRAD)

HSP 1 Score: 144 bits (362), Expect = 9.060e-40
Identity = 85/183 (46.45%), Postives = 114/183 (62.30%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSV-----------RIRQGWEKDLVAHLDRHKRYPKGLV-KAAELSVRMTLDRLGHV 513
            GGAALA+A+L+ +E D       IE+GLE  SP+ E ++LPPGPD++ S ASP+L EQKAE+KE+ LP+D P E  +ADR VT NE+KKP E++                       +S+A  + +RSV           RIR  W+K+LVAHLD+HKRYPK    K+A++ VR TLDR+GHV
Sbjct:    8 GGAALAIAHLQTEEADDALGATAIEIGLEMASPHREVTDLPPGPDTDASAASPQLAEQKAEVKETELPQDKPNEPEEADRLVTENESKKPNEDDPKVAAVQTQASTESVAAEATATPSSEAIPEGERSVAPVIGTGESARRIRATWQKELVAHLDKHKRYPKERQQKSAKIQVRFTLDRMGHV 190          
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Match: A0A1M6J4X3_9BRAD (Outer membrane transport energization protein TonB n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6J4X3_9BRAD)

HSP 1 Score: 143 bits (361), Expect = 2.110e-39
Identity = 83/182 (45.60%), Postives = 107/182 (58.79%), Query Frame = 1
Query:    1 GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESVASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEEXXXXXXXXXXXXXXXXXXXXXXXTSDAEKKSDRSV-----------RIRQGWEKDLVAHLDRHKRYPKGLVKAAELSVRMTLDRLGHV 513
            GGAALA A+L  D+PD       IE+GLE  SP  EP++LP GPD++ SVASP   EQKAELKE+ LPK+VP E A+ DR VT N+ KKP E++                       +++A  ++ RSV           R+R  W+KDL+AHLD+HKRYP    K AE+ V   LDR+GHV
Sbjct:   28 GGAALAFAHLEADDPDDSLGAPAIEIGLEMTSPRLEPTDLPAGPDTDASVASPAQAEQKAELKETELPKEVPTETAEPDRVVTPNDQKKPTEDDTKMAAVQTSASTESVAVEATATPSTEAVPEAPRSVAPAQGTGQSARRLRATWQKDLMAHLDKHKRYPASSQKTAEIVVSFELDRMGHV 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56805.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5P6NZ34_9BRAD4.910e-8784.21Energy transducer TonB n=6 Tax=Bradyrhizobium TaxI... [more]
A0A0D7PQ87_9BRAD2.280e-8585.38Energy transducer TonB n=2 Tax=unclassified Bradyr... [more]
UPI00200164151.450e-8178.36TonB family protein n=1 Tax=Bradyrhizobium sp. 186... [more]
UPI001BADD8659.480e-7788.30TonB family protein n=2 Tax=Bradyrhizobium diazoef... [more]
UPI0015603ECF2.530e-4048.09TonB family protein n=2 Tax=Bradyrhizobiaceae TaxI... [more]
UPI0017F2CB8B3.850e-4047.80Energy transducer TonB n=1 Tax=Rhodopseudomonas sp... [more]
UPI001BA775953.920e-4046.99TonB C-terminal domain-containing protein n=1 Tax=... [more]
A0A1H0RT74_9BRAD5.450e-4047.54Outer membrane transport energization protein TonB... [more]
A0A1B1USZ9_9BRAD9.060e-4046.45Energy transducer TonB n=7 Tax=Bradyrhizobium TaxI... [more]
A0A1M6J4X3_9BRAD2.110e-3945.60Outer membrane transport energization protein TonB... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56805contigP-wetherbeei_contig56805:2..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog335659.S23_43260
PFAMsTonB_2,TonB_C
Model size513
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03832
KEGG TC2.C.1.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.82e-88
EggNOG OGsCOG0810@1|root,COG0810@2|Bacteria,1MZXC@1224|Proteobacteria,2U2BG@28211|Alphaproteobacteria,3JTCR@41294|Bradyrhizobiaceae
DescriptionFunction proposed based on presence of conserved amino acid motif, structural feature or limited homology
Cds size513
COG categoryM
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.5851321-CDS-P-wetherbeei_contig56805:1..5141683186843.5851321-CDS-P-wetherbeei_contig56805:1..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56805 2..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56805.1.1prot_P-wetherbeei_contig56805.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56805 2..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56805.1.1

>prot_P-wetherbeei_contig56805.1.1 ID=prot_P-wetherbeei_contig56805.1.1|Name=mRNA_P-wetherbeei_contig56805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
GGAALALAYLRNDEPDFIADPQGIEVGLETMSPNGEPSELPPGPDSNESV
ASPELTEQKAELKESSLPKDVPMEVADADRAVTMNETKKPVEEETKESVV
PTTASVASPAAEATAMPTSDAEKKSDRSVRIRQGWEKDLVAHLDRHKRYP
KGLVKAAELSVRMTLDRLGHV
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mRNA from alignment at P-wetherbeei_contig56805:2..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56805.1.1 ID=mRNA_P-wetherbeei_contig56805.1.1|Name=mRNA_P-wetherbeei_contig56805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56805:2..514+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGCGGCGCTGGCGCTGGCCTATCTGCGCAATGACGAGCCGGATTT CATCGCGGATCCGCAAGGCATCGAGGTCGGACTCGAGACCATGTCGCCCA ATGGCGAACCCAGCGAATTGCCGCCGGGACCCGACTCGAACGAGTCGGTG GCCTCGCCCGAACTGACCGAGCAGAAGGCCGAGCTCAAGGAGAGCAGCCT TCCCAAGGACGTCCCGATGGAGGTCGCGGACGCCGACCGGGCCGTGACGA TGAACGAGACCAAGAAGCCGGTCGAGGAGGAGACAAAGGAATCGGTTGTT CCCACGACCGCCTCTGTGGCTTCGCCCGCTGCCGAAGCGACGGCGATGCC GACCTCGGACGCCGAAAAGAAGAGCGATCGCTCGGTCCGCATTCGCCAGG GCTGGGAAAAGGACCTGGTCGCGCATCTCGACCGGCACAAGCGCTATCCC AAGGGCCTGGTCAAGGCCGCCGAACTCTCGGTTCGGATGACGCTCGACCG GCTCGGCCATGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56805:2..514+

>mRNA_P-wetherbeei_contig56805.1.1 ID=mRNA_P-wetherbeei_contig56805.1.1|Name=mRNA_P-wetherbeei_contig56805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56805:2..514+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGTGCGGCGCTGGCGCTGGCCTATCTGCGCAATGACGAGCCGGATTT
CATCGCGGATCCGCAAGGCATCGAGGTCGGACTCGAGACCATGTCGCCCA
ATGGCGAACCCAGCGAATTGCCGCCGGGACCCGACTCGAACGAGTCGGTG
GCCTCGCCCGAACTGACCGAGCAGAAGGCCGAGCTCAAGGAGAGCAGCCT
TCCCAAGGACGTCCCGATGGAGGTCGCGGACGCCGACCGGGCCGTGACGA
TGAACGAGACCAAGAAGCCGGTCGAGGAGGAGACAAAGGAATCGGTTGTT
CCCACGACCGCCTCTGTGGCTTCGCCCGCTGCCGAAGCGACGGCGATGCC
GACCTCGGACGCCGAAAAGAAGAGCGATCGCTCGGTCCGCATTCGCCAGG
GCTGGGAAAAGGACCTGGTCGCGCATCTCGACCGGCACAAGCGCTATCCC
AAGGGCCTGGTCAAGGCCGCCGAACTCTCGGTTCGGATGACGCTCGACCG
GCTCGGCCATGTG
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