mRNA_P-wetherbeei_contig56798.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56798.1.1
Unique NamemRNA_P-wetherbeei_contig56798.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2E5M9Z4_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M9Z4_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 4.560e-30
Identity = 62/168 (36.90%), Postives = 103/168 (61.31%), Query Frame = 1
Query:    1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGG--AEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDTRQ 498
            R+A  ++M   ++    ++ +   +P++E  A E R++ L +T  GG  AEFW+R  N FIRVG V F  +P DIEIY+LG  G +  +L+A  AD++   +WLLHEV E  +    V  +  +  +WQSFL+P+QMA+L++P   L++ +LY Y++ +  + + + Q
Sbjct:   97 RLAAPMVMGAGLLASAVLLAQQFAVPVLEDDASELRARKLSETVQGGGAAEFWTRDGNHFIRVGEVRFHSVPADIEIYDLGAGGTIASVLRAESADVLGPGRWLLHEVTESRIDGTEVSQRAESERSWQSFLSPDQMASLVSPIETLTLAELYHYVNYLEATALSSHQ 264          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A354ZAR0_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A354ZAR0_9GAMM)

HSP 1 Score: 105 bits (262), Expect = 5.710e-24
Identity = 63/173 (36.42%), Postives = 102/173 (58.96%), Query Frame = 1
Query:    1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGG--AEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDTRQCQAML 513
            RIA  LL++   +VV     R  +IP  ER A + R+  L +T + G   ++W+R   R +RVG V +GRIP D+EIY LG   R++ +++A +AD++DDR+WLLH+V  R L        R   L   + L  E++A+LI PA +L+  +L  YI  +  +G+++ + + +L
Sbjct:   98 RIAAPLLLIALALVVAVFAARTWVIPDWERSALQLRATVLAETRIEGESTDYWTRSGERILRVGDVRYGRIPIDLEIYTLGPDRRVRSVIRAARADVIDDRRWLLHDVSLRELDRVLSAPIRHDRLELANPLDSERLASLIQPAESLAPRELIGYIASLEANGLNSHRYRFLL 270          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2M7CWG4_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Xanthomonadales bacterium CG02_land_8_20_14_3_00_62_12 TaxID=1974108 RepID=A0A2M7CWG4_9GAMM)

HSP 1 Score: 105 bits (261), Expect = 7.740e-24
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:   19 LMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGA--EFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDT 492
            LM V V+V+T +V     IP  ERQA   RS+ + QT + G+  +FW+R   R +RVG V  GR+P DIEIY+L    RL RL++A  ADI++  +WLLH V E VL   S       +L WQSFL+  Q+  LI PA+ LS   L SYI  ++ + +++
Sbjct:  105 LMAVLVIVLTLLVQTFG-IPGWERQALRLRSQ-ITQTHVDGSITDFWTRTGGRLLRVGDVVMGRVPTDIEIYQLDEHDRLLRLIRAEHADILNQDEWLLHGVTETVLSGQSATTTSKPSLRWQSFLSQVQLGALIQPANTLSPQTLLSYIHRLQTNHLNS 262          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2N1XJA3_9GAMM (LPS export ABC transporter permease LptG n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N1XJA3_9GAMM)

HSP 1 Score: 96.7 bits (239), Expect = 1.310e-20
Identity = 64/168 (38.10%), Postives = 95/168 (56.55%), Query Frame = 1
Query:    1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGA--EFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDTRQ 498
            R+AR +    +++++ A V +   IP  ER A   R++ + QT + G+  EFW+R   R +RVG V  GRIP D+EIYEL  R RL  L++A +ADIV+  +WLL+ V E  +   S          W+SFL+  Q+  LI PA  LS  DL  YI  +  + +++ Q
Sbjct:  113 RLARPVAGAAALLILLAFVAQTYGIPHWERMALRLRAE-VTQTDVDGSNSEFWTRTGGRLLRVGEVVMGRIPTDLEIYELDERDRLIGLIRAERADIVNREEWLLYNVTESEINAQSATTTVEDRRIWRSFLSEPQLENLIQPAATLSPGDLLHYIVSLENNRLNSHQ 279          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A7Y3GJ43_9DELT (LPS export ABC transporter permease LptG n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3GJ43_9DELT)

HSP 1 Score: 85.5 bits (210), Expect = 1.420e-16
Identity = 51/162 (31.48%), Postives = 94/162 (58.02%), Query Frame = 1
Query:    4 IARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGAE--FWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSG 483
            +A G L+++S  ++  MV     +P +++ A+  R+  L  + +   +  FW+R    +I VG    G +  D++I+E   +GRL+    A +ADI D+R+WLL ++ ++ + + S+  + M +L   SFL+ +Q+  L  PA ++S FDL+ Y+  +RGSG
Sbjct:  104 LASGTLLIISTGMLAEMV-----VPPMDQLARTRRAMALSSSGVTLTQQGFWARRGFSYIHVGKTLSGGVATDVDIFESDEKGRLRVFTYAREADIQDNRRWLLKDITQKNITDQSITTRHMESLTLDSFLSSDQVDILELPAISMSSFDLHRYVRALRGSG 260          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A831ZD87_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Crenotrichaceae bacterium TaxID=2268193 RepID=A0A831ZD87_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 3.450e-16
Identity = 52/162 (32.10%), Postives = 83/162 (51.23%), Query Frame = 1
Query:    1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRS-KTLPQTALGGAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSG 483
            RI   LL    ++++ A +    + P +E+QA    S KT   +  G   FWSR++  F+RVG + FGR+P DIEI+E     +L   ++A  A +  +  W L     +   + ++   R     W++FLT E+M  L  P  +LS+  L SY+D +R  G
Sbjct:  133 RIVVSLLKTGIIILLVAFLFEQWIAPPLEQQALRLNSMKTSGLSLAGNNGFWSRNKQLFVRVGDIQFGRVPSDIEIFEFDNAHQLLTYIRAESARLQQNGAWSLTNASVKQFHDKTIDQSRHDDFQWKTFLTAEEMKALEYPIDSLSIQSLASYVDYLRSVG 294          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A358JL08_9PROT (LPS export ABC transporter permease LptG n=4 Tax=Nitrosomonas TaxID=914 RepID=A0A358JL08_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 9.670e-16
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   76 PMVERQAQEYRSKTLPQTA-LG-GAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGID 489
            P ++++A   R+  L QTA LG G   W+R+E   +R+G +       DIEI  L   G L   + A  ADI +D  W+L +V  R   E  +   R   L+WQSFL PE +ATL  P  +LS F+L  +++ +R +G D
Sbjct:  122 PQLQQKAISNRAAALNQTAELGRGLGIWTRNEQNILRIGQMLHAEKAADIEILHLDNTGFLSAHIHAQTADIRNDDAWILRQVIVRKFTEKEIFLTRAEALSWQSFLNPEDIATLTKPPESLSPFELVRHVNFLRSTGQD 261          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2K2VWN6_9DELT (LPS export ABC transporter permease LptG n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2K2VWN6_9DELT)

HSP 1 Score: 78.6 bits (192), Expect = 4.600e-14
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 1
Query:   76 PMVERQAQEYRSKTLPQTA--LGGAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSG 483
            P +E+ A+  RS  +  T   L    FW+R  N FI VG    G I   +++YE    G L+  + A +ADI ++++W+L +++++V+ E  +    + T+A +SFL+ EQ+  L  P  +LS  DLY Y   +R  G
Sbjct:  123 PPMEQHARLSRSLAISDTGILLTKDGFWARQGNSFIHVGKTLSGGIATGLDVYEGDKEGGLRAFIHAREADIHNNKRWVLKDIQKKVIEEQRITTHNLPTMALESFLSTEQVNILELPPDSLSPSDLYKYNQALRQRG 260          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A1H9KNP2_9PROT (Lipopolysaccharide export system permease protein n=3 Tax=Nitrosomonas TaxID=914 RepID=A0A1H9KNP2_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.620e-13
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   76 PMVERQAQEYRSKTLPQTA-LG-GAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGID 489
            P ++++A   R+  L QTA LG G   W+R+E   +R+G +   +   D+EI        LQ  + A  A+I  ++ W+L  V  R      +   R  TL+WQSFL PE +ATL  P  +LS  +L  ++D +R +G D
Sbjct:  122 PQLQQKAISNRAVALNQTAELGKGLGIWTRNERNILRIGQMLHAKKAADVEILNFDQANLLQAHIHAEFAEIHSNKAWILTNVVIRKFTGSQILLSRAETLSWQSFLKPEDIATLTKPPESLSPIELVRHVDFLRSTGQD 261          
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A524IPI2_9BACT (LPS export ABC transporter permease LptG n=1 Tax=Nitrospirales bacterium TaxID=2358460 RepID=A0A524IPI2_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-13
Identity = 46/153 (30.07%), Postives = 82/153 (53.59%), Query Frame = 1
Query:   13 GLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTAL--GGAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYID 465
            G+L +V+VV +   V      P +++ A   RS  L  + +  G    W R  NR+IR+  + +G IP++I+I+E    G +   L A +AD+ + +KW+L  ++++++    V    + +L W S    E+M  L  PA +L+  DL+ YI+
Sbjct:  109 GILFMVTVVCLEEYVT-----PTLDQYAHISRSLALSDSHVYQGKQGLWFREGNRYIRIKTLKYGEIPQEIDIFEFNPNGEMIAYLYAEEADVQNPQKWVLKNIQKKIIDGHRVSEVALPSLMWDSPFNREEMRLLTLPASSLAPSDLFRYIE 256          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2E5M9Z4_9GAMM4.560e-3036.90LPS export ABC transporter permease LptG n=1 Tax=G... [more]
A0A354ZAR0_9GAMM5.710e-2436.42LPS export ABC transporter permease LptG n=1 Tax=X... [more]
A0A2M7CWG4_9GAMM7.740e-2443.13LPS export ABC transporter permease LptG n=1 Tax=X... [more]
A0A2N1XJA3_9GAMM1.310e-2038.10LPS export ABC transporter permease LptG n=3 Tax=G... [more]
A0A7Y3GJ43_9DELT1.420e-1631.48LPS export ABC transporter permease LptG n=1 Tax=D... [more]
A0A831ZD87_9GAMM3.450e-1632.10LPS export ABC transporter permease LptG n=1 Tax=C... [more]
A0A358JL08_9PROT9.670e-1637.14LPS export ABC transporter permease LptG n=4 Tax=N... [more]
A0A2K2VWN6_9DELT4.600e-1433.33LPS export ABC transporter permease LptG n=2 Tax=P... [more]
A0A1H9KNP2_9PROT1.620e-1334.29Lipopolysaccharide export system permease protein ... [more]
A0A524IPI2_9BACT2.300e-1330.07LPS export ABC transporter permease LptG n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56798contigP-wetherbeei_contig56798:1..513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1283300.ATXB01000001_gene1370
PFAMsYjgP_YjgQ
Model size513
Max annot lvl135618|Methylococcales
KEGG koko:K11720
KEGG TC1.B.42.1
KEGG Pathwayko02010,map02010
KEGG ModuleM00320
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.02e-17
EggNOG OGsCOG0795@1|root,COG0795@2|Bacteria,1MVW3@1224|Proteobacteria,1RM8H@1236|Gammaproteobacteria,1XE35@135618|Methylococcales
DescriptionPermease YjgP YjgQ
Cds size492
COG categoryS
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.2322693-UTR-P-wetherbeei_contig56798:0..211683186843.2322693-UTR-P-wetherbeei_contig56798:0..21Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56798 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.241582-CDS-P-wetherbeei_contig56798:21..5131683186843.241582-CDS-P-wetherbeei_contig56798:21..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56798 22..513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56798.1.1prot_P-wetherbeei_contig56798.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56798 22..513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56798.1.1

>prot_P-wetherbeei_contig56798.1.1 ID=prot_P-wetherbeei_contig56798.1.1|Name=mRNA_P-wetherbeei_contig56798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGAEFWSRHENR
FIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVE
ERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEM
RGSGIDTRQCQAML
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mRNA from alignment at P-wetherbeei_contig56798:1..513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56798.1.1 ID=mRNA_P-wetherbeei_contig56798.1.1|Name=mRNA_P-wetherbeei_contig56798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56798:1..513+ (Phaeothamnion wetherbeei SAG_119_79)
CGTATCGCGCGTGGGCTGTTGATGCTGGTCAGCGTGGTGGTGGTGACCGC CATGGTCGGTCGCGCGACGCTCATTCCGATGGTCGAACGCCAGGCCCAGG AATACCGGTCGAAAACACTGCCGCAAACGGCGCTCGGCGGCGCTGAATTC TGGAGTCGTCACGAGAACCGTTTTATCCGCGTCGGCGGCGTCGATTTCGG CCGCATTCCGCGCGACATCGAAATCTATGAACTCGGCGTACGCGGTCGTC TGCAACGCCTGTTACAGGCGCACAAGGCCGACATCGTCGATGATCGCAAA TGGCTGCTGCATGAGGTCGAAGAACGGGTGTTGGGCGAGGACTCGGTGCA GCACAAGCGCATGGCCACCCTCGCCTGGCAGAGTTTTCTGACACCGGAAC AGATGGCAACCCTGATCGCGCCGGCCCACGCCTTGTCGGTGTTCGACCTC TATTCCTACATCGACGAAATGCGCGGTTCAGGCATAGACACGCGCCAGTG CCAGGCGATGTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56798:1..513+

>mRNA_P-wetherbeei_contig56798.1.1 ID=mRNA_P-wetherbeei_contig56798.1.1|Name=mRNA_P-wetherbeei_contig56798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig56798:1..513+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGTCAGCGTGGTGGTGGTGACCGCCATGGTCGGTCGCGCGACGCT
CATTCCGATGGTCGAACGCCAGGCCCAGGAATACCGGTCGAAAACACTGC
CGCAAACGGCGCTCGGCGGCGCTGAATTCTGGAGTCGTCACGAGAACCGT
TTTATCCGCGTCGGCGGCGTCGATTTCGGCCGCATTCCGCGCGACATCGA
AATCTATGAACTCGGCGTACGCGGTCGTCTGCAACGCCTGTTACAGGCGC
ACAAGGCCGACATCGTCGATGATCGCAAATGGCTGCTGCATGAGGTCGAA
GAACGGGTGTTGGGCGAGGACTCGGTGCAGCACAAGCGCATGGCCACCCT
CGCCTGGCAGAGTTTTCTGACACCGGAACAGATGGCAACCCTGATCGCGC
CGGCCCACGCCTTGTCGGTGTTCGACCTCTATTCCTACATCGACGAAATG
CGCGGTTCAGGCATAGACACGCGCCAGTGCCAGGCGATGTTG
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