mRNA_P-wetherbeei_contig56798.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2E5M9Z4_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E5M9Z4_9GAMM) HSP 1 Score: 121 bits (304), Expect = 4.560e-30 Identity = 62/168 (36.90%), Postives = 103/168 (61.31%), Query Frame = 1
Query: 1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGG--AEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDTRQ 498
R+A ++M ++ ++ + +P++E A E R++ L +T GG AEFW+R N FIRVG V F +P DIEIY+LG G + +L+A AD++ +WLLHEV E + V + + +WQSFL+P+QMA+L++P L++ +LY Y++ + + + + Q
Sbjct: 97 RLAAPMVMGAGLLASAVLLAQQFAVPVLEDDASELRARKLSETVQGGGAAEFWTRDGNHFIRVGEVRFHSVPADIEIYDLGAGGTIASVLRAESADVLGPGRWLLHEVTESRIDGTEVSQRAESERSWQSFLSPDQMASLVSPIETLTLAELYHYVNYLEATALSSHQ 264
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A354ZAR0_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A354ZAR0_9GAMM) HSP 1 Score: 105 bits (262), Expect = 5.710e-24 Identity = 63/173 (36.42%), Postives = 102/173 (58.96%), Query Frame = 1
Query: 1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGG--AEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDTRQCQAML 513
RIA LL++ +VV R +IP ER A + R+ L +T + G ++W+R R +RVG V +GRIP D+EIY LG R++ +++A +AD++DDR+WLLH+V R L R L + L E++A+LI PA +L+ +L YI + +G+++ + + +L
Sbjct: 98 RIAAPLLLIALALVVAVFAARTWVIPDWERSALQLRATVLAETRIEGESTDYWTRSGERILRVGDVRYGRIPIDLEIYTLGPDRRVRSVIRAARADVIDDRRWLLHDVSLRELDRVLSAPIRHDRLELANPLDSERLASLIQPAESLAPRELIGYIASLEANGLNSHRYRFLL 270
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2M7CWG4_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Xanthomonadales bacterium CG02_land_8_20_14_3_00_62_12 TaxID=1974108 RepID=A0A2M7CWG4_9GAMM) HSP 1 Score: 105 bits (261), Expect = 7.740e-24 Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query: 19 LMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGA--EFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDT 492
LM V V+V+T +V IP ERQA RS+ + QT + G+ +FW+R R +RVG V GR+P DIEIY+L RL RL++A ADI++ +WLLH V E VL S +L WQSFL+ Q+ LI PA+ LS L SYI ++ + +++
Sbjct: 105 LMAVLVIVLTLLVQTFG-IPGWERQALRLRSQ-ITQTHVDGSITDFWTRTGGRLLRVGDVVMGRVPTDIEIYQLDEHDRLLRLIRAEHADILNQDEWLLHGVTETVLSGQSATTTSKPSLRWQSFLSQVQLGALIQPANTLSPQTLLSYIHRLQTNHLNS 262
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2N1XJA3_9GAMM (LPS export ABC transporter permease LptG n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N1XJA3_9GAMM) HSP 1 Score: 96.7 bits (239), Expect = 1.310e-20 Identity = 64/168 (38.10%), Postives = 95/168 (56.55%), Query Frame = 1
Query: 1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGA--EFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGIDTRQ 498
R+AR + +++++ A V + IP ER A R++ + QT + G+ EFW+R R +RVG V GRIP D+EIYEL R RL L++A +ADIV+ +WLL+ V E + S W+SFL+ Q+ LI PA LS DL YI + + +++ Q
Sbjct: 113 RLARPVAGAAALLILLAFVAQTYGIPHWERMALRLRAE-VTQTDVDGSNSEFWTRTGGRLLRVGEVVMGRIPTDLEIYELDERDRLIGLIRAERADIVNREEWLLYNVTESEINAQSATTTVEDRRIWRSFLSEPQLENLIQPAATLSPGDLLHYIVSLENNRLNSHQ 279
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A7Y3GJ43_9DELT (LPS export ABC transporter permease LptG n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7Y3GJ43_9DELT) HSP 1 Score: 85.5 bits (210), Expect = 1.420e-16 Identity = 51/162 (31.48%), Postives = 94/162 (58.02%), Query Frame = 1
Query: 4 IARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGAE--FWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSG 483
+A G L+++S ++ MV +P +++ A+ R+ L + + + FW+R +I VG G + D++I+E +GRL+ A +ADI D+R+WLL ++ ++ + + S+ + M +L SFL+ +Q+ L PA ++S FDL+ Y+ +RGSG
Sbjct: 104 LASGTLLIISTGMLAEMV-----VPPMDQLARTRRAMALSSSGVTLTQQGFWARRGFSYIHVGKTLSGGVATDVDIFESDEKGRLRVFTYAREADIQDNRRWLLKDITQKNITDQSITTRHMESLTLDSFLSSDQVDILELPAISMSSFDLHRYVRALRGSG 260
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A831ZD87_9GAMM (LPS export ABC transporter permease LptG n=1 Tax=Crenotrichaceae bacterium TaxID=2268193 RepID=A0A831ZD87_9GAMM) HSP 1 Score: 84.7 bits (208), Expect = 3.450e-16 Identity = 52/162 (32.10%), Postives = 83/162 (51.23%), Query Frame = 1
Query: 1 RIARGLLMLVSVVVVTAMVGRATLIPMVERQAQEYRS-KTLPQTALGGAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSG 483
RI LL ++++ A + + P +E+QA S KT + G FWSR++ F+RVG + FGR+P DIEI+E +L ++A A + + W L + + ++ R W++FLT E+M L P +LS+ L SY+D +R G
Sbjct: 133 RIVVSLLKTGIIILLVAFLFEQWIAPPLEQQALRLNSMKTSGLSLAGNNGFWSRNKQLFVRVGDIQFGRVPSDIEIFEFDNAHQLLTYIRAESARLQQNGAWSLTNASVKQFHDKTIDQSRHDDFQWKTFLTAEEMKALEYPIDSLSIQSLASYVDYLRSVG 294
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A358JL08_9PROT (LPS export ABC transporter permease LptG n=4 Tax=Nitrosomonas TaxID=914 RepID=A0A358JL08_9PROT) HSP 1 Score: 83.2 bits (204), Expect = 9.670e-16 Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 1
Query: 76 PMVERQAQEYRSKTLPQTA-LG-GAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGID 489
P ++++A R+ L QTA LG G W+R+E +R+G + DIEI L G L + A ADI +D W+L +V R E + R L+WQSFL PE +ATL P +LS F+L +++ +R +G D
Sbjct: 122 PQLQQKAISNRAAALNQTAELGRGLGIWTRNEQNILRIGQMLHAEKAADIEILHLDNTGFLSAHIHAQTADIRNDDAWILRQVIVRKFTEKEIFLTRAEALSWQSFLNPEDIATLTKPPESLSPFELVRHVNFLRSTGQD 261
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A2K2VWN6_9DELT (LPS export ABC transporter permease LptG n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2K2VWN6_9DELT) HSP 1 Score: 78.6 bits (192), Expect = 4.600e-14 Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 1
Query: 76 PMVERQAQEYRSKTLPQTA--LGGAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSG 483
P +E+ A+ RS + T L FW+R N FI VG G I +++YE G L+ + A +ADI ++++W+L +++++V+ E + + T+A +SFL+ EQ+ L P +LS DLY Y +R G
Sbjct: 123 PPMEQHARLSRSLAISDTGILLTKDGFWARQGNSFIHVGKTLSGGIATGLDVYEGDKEGGLRAFIHAREADIHNNKRWVLKDIQKKVIEEQRITTHNLPTMALESFLSTEQVNILELPPDSLSPSDLYKYNQALRQRG 260
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A1H9KNP2_9PROT (Lipopolysaccharide export system permease protein n=3 Tax=Nitrosomonas TaxID=914 RepID=A0A1H9KNP2_9PROT) HSP 1 Score: 77.0 bits (188), Expect = 1.620e-13 Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 1
Query: 76 PMVERQAQEYRSKTLPQTA-LG-GAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYIDEMRGSGID 489
P ++++A R+ L QTA LG G W+R+E +R+G + + D+EI LQ + A A+I ++ W+L V R + R TL+WQSFL PE +ATL P +LS +L ++D +R +G D
Sbjct: 122 PQLQQKAISNRAVALNQTAELGKGLGIWTRNERNILRIGQMLHAKKAADVEILNFDQANLLQAHIHAEFAEIHSNKAWILTNVVIRKFTGSQILLSRAETLSWQSFLKPEDIATLTKPPESLSPIELVRHVDFLRSTGQD 261
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Match: A0A524IPI2_9BACT (LPS export ABC transporter permease LptG n=1 Tax=Nitrospirales bacterium TaxID=2358460 RepID=A0A524IPI2_9BACT) HSP 1 Score: 76.6 bits (187), Expect = 2.300e-13 Identity = 46/153 (30.07%), Postives = 82/153 (53.59%), Query Frame = 1
Query: 13 GLLMLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTAL--GGAEFWSRHENRFIRVGGVDFGRIPRDIEIYELGVRGRLQRLLQAHKADIVDDRKWLLHEVEERVLGEDSVQHKRMATLAWQSFLTPEQMATLIAPAHALSVFDLYSYID 465
G+L +V+VV + V P +++ A RS L + + G W R NR+IR+ + +G IP++I+I+E G + L A +AD+ + +KW+L ++++++ V + +L W S E+M L PA +L+ DL+ YI+
Sbjct: 109 GILFMVTVVCLEEYVT-----PTLDQYAHISRSLALSDSHVYQGKQGLWFREGNRYIRIKTLKYGEIPQEIDIFEFNPNGEMIAYLYAEEADVQNPQKWVLKNIQKKIIDGHRVSEVALPSLMWDSPFNREEMRLLTLPASSLAPSDLFRYIE 256 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56798.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56798.1.1 >prot_P-wetherbeei_contig56798.1.1 ID=prot_P-wetherbeei_contig56798.1.1|Name=mRNA_P-wetherbeei_contig56798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp MLVSVVVVTAMVGRATLIPMVERQAQEYRSKTLPQTALGGAEFWSRHENRback to top mRNA from alignment at P-wetherbeei_contig56798:1..513+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56798.1.1 ID=mRNA_P-wetherbeei_contig56798.1.1|Name=mRNA_P-wetherbeei_contig56798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56798:1..513+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56798:1..513+ >mRNA_P-wetherbeei_contig56798.1.1 ID=mRNA_P-wetherbeei_contig56798.1.1|Name=mRNA_P-wetherbeei_contig56798.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig56798:1..513+ (Phaeothamnion wetherbeei SAG_119_79)back to top |