mRNA_P-wetherbeei_contig5679.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5679.2.1
Unique NamemRNA_P-wetherbeei_contig5679.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5679.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5679contigP-wetherbeei_contig5679:2792..3752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size549
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.1694655-CDS-P-wetherbeei_contig5679:2791..31091683186843.1694655-CDS-P-wetherbeei_contig5679:2791..3109Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5679 2792..3109 -
1683186843.1781952-CDS-P-wetherbeei_contig5679:3521..36711683186843.1781952-CDS-P-wetherbeei_contig5679:3521..3671Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5679 3522..3671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186843.186125-UTR-P-wetherbeei_contig5679:3671..37521683186843.186125-UTR-P-wetherbeei_contig5679:3671..3752Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5679 3672..3752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5679.2.1prot_P-wetherbeei_contig5679.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5679 2792..3671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5679.2.1

>prot_P-wetherbeei_contig5679.2.1 ID=prot_P-wetherbeei_contig5679.2.1|Name=mRNA_P-wetherbeei_contig5679.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
MSKRLAEKNARSIRDNKDAASEKAGRVKRVAISSSNPPPKKARGDGRAKR
APLAYGTSSAKSNAASADTPAASGKARPKDKGKKRQQQQQRGTAAAAMAA
AAAAPARSELLPYELMINLHQRPIEASDELFVERELQRVMKLFSLDAATV
DEATSA
back to top

mRNA from alignment at P-wetherbeei_contig5679:2792..3752-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5679.2.1 ID=mRNA_P-wetherbeei_contig5679.2.1|Name=mRNA_P-wetherbeei_contig5679.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=961bp|location=Sequence derived from alignment at P-wetherbeei_contig5679:2792..3752- (Phaeothamnion wetherbeei SAG_119_79)
GTGGGGCGCAATTAATCGCGCATTCCGCGTGATCTCGTAAATTTGATCAA
GGCGCAAGGTAAGTTTCCGCAAGGCGAGAGCATGTCGAAGCGGCTGGCCG
AAAAGAACGCGCGCAGTATTCGCGACAACAAAGATGCTGCCAGCGAGAAG
GCGGGCCGCGTGAAACGGGTCGCGATAAGCTCCTCCAACCCTCCTCCGAA
GAAAGCTCGAGGCGACGGCCGCGCCAAACGGGTACGTTTTCGAGTTTTGA
AGGCCGCCAGCCCCTCAGTGTTCCCATTGCTTGCGTGAAGCAAGGCCTTT
GCTTCTAAAAAGCTCGCATTCCGCTTTTTGAAAAGGACAAACTGTCTTCG
TCGAGAGTATCCTTCCAACAAAAATGTTTTATGCGCAACGCTCTCTGTAG
GATGGCTGCGTGACTTTGCTCTGCTTGTGCCTGGTTGAAAACATGGTTCT
AACGGAATTCAAAGTTGTCCTGTTTGCCAGATGGTATGCCACACTGCGCT
GACGCAGCGTGTGCGTCTGATGGGAAGAAGTGTAAGGAGCCACCATGCTG
ACCTTTGTGTAACTCATTGCCTTATCCTCCAATTCACTTCTCCCCTCGGG
CACGTTTTCTCCCTGCCGACCCTGTTGTTCACTGATGCTGTAGGCGCCAC
TGGCCTACGGCACGTCCTCCGCCAAGTCCAACGCTGCATCGGCCGACACG
CCTGCGGCCAGTGGCAAGGCGCGTCCAAAGGACAAGGGCAAGAAGAGGCA
ACAACAGCAGCAGCGCGGGACGGCTGCGGCTGCGATGGCGGCTGCCGCGG
CAGCGCCCGCCAGATCGGAACTGCTGCCGTACGAGCTCATGATTAACCTG
CACCAGCGGCCGATCGAGGCGTCGGACGAACTCTTTGTTGAACGCGAGCT
CCAGAGAGTCATGAAGCTGTTTTCGCTGGACGCCGCGACAGTGGATGAGG
CGACTTCCGCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5679:2792..3752-

>mRNA_P-wetherbeei_contig5679.2.1 ID=mRNA_P-wetherbeei_contig5679.2.1|Name=mRNA_P-wetherbeei_contig5679.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig5679:2792..3752- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAAGCGGCTGGCCGAAAAGAACGCGCGCAGTATTCGCGACAACAA
AGATGCTGCCAGCGAGAAGGCGGGCCGCGTGAAACGGGTCGCGATAAGCT
CCTCCAACCCTCCTCCGAAGAAAGCTCGAGGCGACGGCCGCGCCAAACGG
GCGCCACTGGCCTACGGCACGTCCTCCGCCAAGTCCAACGCTGCATCGGC
CGACACGCCTGCGGCCAGTGGCAAGGCGCGTCCAAAGGACAAGGGCAAGA
AGAGGCAACAACAGCAGCAGCGCGGGACGGCTGCGGCTGCGATGGCGGCT
GCCGCGGCAGCGCCCGCCAGATCGGAACTGCTGCCGTACGAGCTCATGAT
TAACCTGCACCAGCGGCCGATCGAGGCGTCGGACGAACTCTTTGTTGAAC
GCGAGCTCCAGAGAGTCATGAAGCTGTTTTCGCTGGACGCCGCGACAGTG
GATGAGGCGACTTCCGCT
back to top