mRNA_P-wetherbeei_contig56759.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56759.1.1
Unique NamemRNA_P-wetherbeei_contig56759.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: A0A363REE5_9BURK (Uncharacterized protein n=9 Tax=Comamonadaceae TaxID=80864 RepID=A0A363REE5_9BURK)

HSP 1 Score: 107 bits (266), Expect = 7.800e-26
Identity = 116/155 (74.84%), Postives = 124/155 (80.00%), Query Frame = 1
Query:    7 LDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            LDARD  G TPLL+AT +N +A A  LIEAGADVNAKD ++DSPYLYAGARG  EIL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+EAI+LSDGGP HQ             NLAD EGVTPL HA +R
Sbjct:   54 LDARDAQGRTPLLVATQSNQVAAARALIEAGADVNAKDHIEDSPYLYAGARGHQEILQMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEAIVLSDGGPRHQQILQLLIDAKADVNLADKEGVTPLAHARQR 208          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: B0KPT7_PSEPG (Ankyrin n=3 Tax=Pseudomonadaceae TaxID=135621 RepID=B0KPT7_PSEPG)

HSP 1 Score: 96.3 bits (238), Expect = 9.940e-22
Identity = 109/157 (69.43%), Postives = 121/157 (77.07%), Query Frame = 1
Query:    1 AWLDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            A LD+RD  G T LL+ATH N LA A  LIEAGADVNAKD++ DSPYLYAGARGLN+IL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EA++L +GGP H               +AD +GVT L+HA +R
Sbjct:   49 ARLDSRDEQGRTALLVATHGNQLAAAKALIEAGADVNAKDNIDDSPYLYAGARGLNDILRLTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVVLGNGGPRHVEVVRRLLAAGADRQIADKDGVTALEHARQR 205          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: A0A0C5RQG4_PSEPU (Ankyrin n=16 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A0C5RQG4_PSEPU)

HSP 1 Score: 94.4 bits (233), Expect = 5.360e-21
Identity = 107/157 (68.15%), Postives = 118/157 (75.16%), Query Frame = 1
Query:    1 AWLDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            A L+ RD  G T LL+ATH N +A A  LIEAGADVNAKD++ DSPYLYAGARGLN+IL      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EA+IL DGGP H               +AD +GVT L+HA +R
Sbjct:   49 AQLENRDEQGRTALLVATHGNHVAAAQALIEAGADVNAKDNIADSPYLYAGARGLNDILRLTLSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVILGDGGPRHVEIVRQLLAAGADRQIADKDGVTALEHARQR 205          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: H2FTQ1_OCESG (Ankyrin repeat-containing protein n=2 Tax=Oceanimonas sp. (strain GK1 / IBRC-M 10197) TaxID=511062 RepID=H2FTQ1_OCESG)

HSP 1 Score: 93.6 bits (231), Expect = 1.180e-20
Identity = 107/157 (68.15%), Postives = 121/157 (77.07%), Query Frame = 1
Query:    1 AWLDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            A L++RDG G T L++AT  N +  A +LI+AGADVNAKD + DSPYLYAGA G N+IL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EAI+L  GGPAH              N+AD +G+TPLQHA +R
Sbjct:   50 AGLESRDGDGRTALMLATRHNRVEAARVLIDAGADVNAKDRIHDSPYLYAGASGFNDILALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAIVLGQGGPAHTRIVALLLDAGADPNIADADGITPLQHARQR 206          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: A0A095UNT7_9BURK (Ankyrin n=6 Tax=Achromobacter TaxID=222 RepID=A0A095UNT7_9BURK)

HSP 1 Score: 89.7 bits (221), Expect = 3.690e-19
Identity = 111/157 (70.70%), Postives = 119/157 (75.80%), Query Frame = 1
Query:    1 AWLDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            A L+ RDG G TPLL AT  N +  A  LI+AGADVNAK+ + DS YL AGARGL EIL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EA+IL DGGP HQ             NLAD +GVTPL+HA  R
Sbjct:   51 AALETRDGGGNTPLLRATQGNHVEAARALIDAGADVNAKNAIHDSAYLLAGARGLREILAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVILGDGGPRHQAIVKRLIEAGADVNLADGKGVTPLKHARER 207          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: A0A1M2YYE8_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 65-79 TaxID=1895815 RepID=A0A1M2YYE8_9HYPH)

HSP 1 Score: 88.2 bits (217), Expect = 1.060e-18
Identity = 56/155 (36.13%), Postives = 70/155 (45.16%), Query Frame = 1
Query:   10 DARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-EAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            + RDG G T LL+AT  + + IA +LIEAGADVNAKD +QD+P+L+AGA G + IL                                                      L EA+ILSDGGP HQ              +AD +GVTPL+HA RR
Sbjct:   39 EVRDGEGRTALLLATRQDQVEIARLLIEAGADVNAKDTIQDTPFLFAGAEGRDAILRLILATGKANLRDTNRYGGVALIPAAHHGHPSTVRILLDTDIDIDHVNNLGWTALIEAVILSDGGPVHQEIVGLLVDAGADREIADRDGVTPLEHARRR 193          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: A0A3C1XUB4_9BURK (Uncharacterized protein (Fragment) n=1 Tax=Achromobacter sp. TaxID=134375 RepID=A0A3C1XUB4_9BURK)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-18
Identity = 105/155 (67.74%), Postives = 115/155 (74.19%), Query Frame = 1
Query:    7 LDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            ++ RDG G TPLL AT  N    A  LIEAGA+VNA++++QDS YL AGA+G  EIL      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGP HQ             NL D +G TPLQHA +R
Sbjct:    1 IETRDGQGNTPLLRATQGNHAQAAAALIEAGANVNAQNNMQDSAYLLAGAQGYREILELTLSHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPRHQAIVALLIEGGADVNLPDKDGRTPLQHARQR 155          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: A0A0Q7U2D7_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7U2D7_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 1.480e-17
Identity = 112/160 (70.00%), Postives = 120/160 (75.00%), Query Frame = 1
Query:    1 AWLDARDGSGATPLLIATHAND---LAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            A +DARDG G T LL ATHA        A +LI AGADVNAKD ++DSPYLYA A G N+ILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EAI+L DGGP H               +AD +GVTPL HA RR
Sbjct:   30 ASVDARDGEGRTALLAATHAAPGVGTEAARLLIAAGADVNAKDRIEDSPYLYAAAEGRNDILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAIVLGDGGPVHTEIVRELVRAGATVTIADRDGVTPLAHARRR 189          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: A0A6S7BCH7_9BURK (Uncharacterized protein n=2 Tax=Achromobacter kerstersii TaxID=1353890 RepID=A0A6S7BCH7_9BURK)

HSP 1 Score: 85.5 bits (210), Expect = 1.530e-17
Identity = 112/155 (72.26%), Postives = 119/155 (76.77%), Query Frame = 1
Query:    7 LDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            L+ RD  G T LL AT AN +  A  LIEAGADVNA++ +QDS YL AGA G  EIL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGP HQ             NLAD +G TPLQHA +R
Sbjct:   54 LEGRDVQGNTALLRATQANQVDAARALIEAGADVNAQNRMQDSAYLLAGAEGYREILDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPRHQAIVALLIAAGADVNLADRDGRTPLQHARQR 208          
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Match: UPI001EFA06F2 (ankyrin repeat domain-containing protein n=1 Tax=Stenotrophomonas maltophilia TaxID=40324 RepID=UPI001EFA06F2)

HSP 1 Score: 82.8 bits (203), Expect = 6.660e-17
Identity = 57/152 (37.50%), Postives = 64/152 (42.11%), Query Frame = 1
Query:   16 RDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYAGARGLNEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAIILSDGGPAHQXXXXXXXXXXXXXNLADFEGVTPLQHAERR 471
            R   G T LL+ATH N++  A  LIEAGADVNAKD LQDS YLYAGARGL+EIL                                                      LEAI+L DGG                  LAD +GVTPL HA +R
Sbjct:   12 RHVQGRTALLLATHGNNVDAARELIEAGADVNAKDALQDSAYLYAGARGLDEILAMTLAHGADLRSTNRYGGTALIPAAERGHVATVRTLLRAGVAVDHVNRLHWTALLEAILLGDGGARQVQIVQLLLEAGADPELADGDGVTPLAHARQR 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56759.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A363REE5_9BURK7.800e-2674.84Uncharacterized protein n=9 Tax=Comamonadaceae Tax... [more]
B0KPT7_PSEPG9.940e-2269.43Ankyrin n=3 Tax=Pseudomonadaceae TaxID=135621 RepI... [more]
A0A0C5RQG4_PSEPU5.360e-2168.15Ankyrin n=16 Tax=Pseudomonadaceae TaxID=135621 Rep... [more]
H2FTQ1_OCESG1.180e-2068.15Ankyrin repeat-containing protein n=2 Tax=Oceanimo... [more]
A0A095UNT7_9BURK3.690e-1970.70Ankyrin n=6 Tax=Achromobacter TaxID=222 RepID=A0A0... [more]
A0A1M2YYE8_9HYPH1.060e-1836.13Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
A0A3C1XUB4_9BURK1.260e-1867.74Uncharacterized protein (Fragment) n=1 Tax=Achromo... [more]
A0A0Q7U2D7_9HYPH1.480e-1770.00Uncharacterized protein n=1 Tax=Pseudolabrys sp. R... [more]
A0A6S7BCH7_9BURK1.530e-1772.26Uncharacterized protein n=2 Tax=Achromobacter kers... [more]
UPI001EFA06F26.660e-1737.50ankyrin repeat domain-containing protein n=1 Tax=S... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56759contigP-wetherbeei_contig56759:44..514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog76869.PputGB1_2388
PFAMsAnk,Ank_2,Ank_4
Model size471
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K06867
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.63e-22
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria,1N952@1224|Proteobacteria,1RPZA@1236|Gammaproteobacteria
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-20_002370.1
Descriptionankyrin repeat
Cds size471
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.835839-CDS-P-wetherbeei_contig56759:43..5141683186842.835839-CDS-P-wetherbeei_contig56759:43..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56759 44..514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56759.1.1prot_P-wetherbeei_contig56759.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56759 44..514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56759.1.1

>prot_P-wetherbeei_contig56759.1.1 ID=prot_P-wetherbeei_contig56759.1.1|Name=mRNA_P-wetherbeei_contig56759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
AWLDARDGSGATPLLIATHANDLAIATILIEAGADVNAKDDLQDSPYLYA
GARGLNEILLLTLDHGADLTSTNRFGGTALIPACERGHVETVRILIAAGV
DVDHVNRLGWTGLLEAIILSDGGPAHQQIVRLLIAAGADVNLADFEGVTP
LQHAERR
back to top

mRNA from alignment at P-wetherbeei_contig56759:44..514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56759.1.1 ID=mRNA_P-wetherbeei_contig56759.1.1|Name=mRNA_P-wetherbeei_contig56759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig56759:44..514+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTGGCTCGACGCGCGGGACGGCTCCGGCGCGACCCCACTCCTGATCGC CACCCACGCCAACGACCTCGCGATCGCCACCATCCTGATCGAGGCCGGGG CCGATGTGAATGCCAAGGACGACCTGCAGGATAGCCCATACCTCTACGCC GGCGCGCGCGGCCTCAACGAGATCCTGCTCCTCACGCTCGACCACGGTGC CGATCTGACGAGCACCAACCGCTTCGGCGGCACCGCCCTCATCCCCGCCT GCGAGCGCGGCCACGTCGAGACCGTCCGCATCCTGATCGCGGCCGGCGTC GACGTCGATCATGTGAACCGCCTCGGCTGGACCGGCCTGCTGGAGGCGAT CATCCTCTCCGACGGAGGTCCCGCCCACCAGCAGATCGTCCGCCTCCTGA TCGCGGCCGGCGCCGATGTCAACCTCGCGGATTTCGAGGGGGTGACGCCC CTCCAGCATGCCGAGCGGCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56759:44..514+

>mRNA_P-wetherbeei_contig56759.1.1 ID=mRNA_P-wetherbeei_contig56759.1.1|Name=mRNA_P-wetherbeei_contig56759.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig56759:44..514+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTGGCTCGACGCGCGGGACGGCTCCGGCGCGACCCCACTCCTGATCGC
CACCCACGCCAACGACCTCGCGATCGCCACCATCCTGATCGAGGCCGGGG
CCGATGTGAATGCCAAGGACGACCTGCAGGATAGCCCATACCTCTACGCC
GGCGCGCGCGGCCTCAACGAGATCCTGCTCCTCACGCTCGACCACGGTGC
CGATCTGACGAGCACCAACCGCTTCGGCGGCACCGCCCTCATCCCCGCCT
GCGAGCGCGGCCACGTCGAGACCGTCCGCATCCTGATCGCGGCCGGCGTC
GACGTCGATCATGTGAACCGCCTCGGCTGGACCGGCCTGCTGGAGGCGAT
CATCCTCTCCGACGGAGGTCCCGCCCACCAGCAGATCGTCCGCCTCCTGA
TCGCGGCCGGCGCCGATGTCAACCTCGCGGATTTCGAGGGGGTGACGCCC
CTCCAGCATGCCGAGCGGCGC
back to top