mRNA_P-wetherbeei_contig56711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56711.1.1
Unique NamemRNA_P-wetherbeei_contig56711.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56711.1.1 vs. uniprot
Match: UPI001BAE2931 (hypothetical protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0283 TaxID=2807671 RepID=UPI001BAE2931)

HSP 1 Score: 48.5 bits (114), Expect = 7.860e-6
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:    1 MTHRLRLKLASLTFAVLWTGWMMWLSSPLRPAEIVILTTSGMLAGFGWHWLYGRWYRWHFAR 186
            M    RLKL+++ F + W G M+W S    PA I+ILT  G +AG+ W+       RW F R
Sbjct:    1 MDQAKRLKLSAIAFTIFWIGGMLWWSGERYPANIIILTICGTIAGYLWY----LGMRWAFQR 58
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001BAE29317.860e-640.32hypothetical protein n=1 Tax=Bradyrhizobium sp. AU... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56711contigP-wetherbeei_contig56711:115..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1037409.BJ6T_27490
Model size216
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.26e-07
EggNOG OGs2CAD8@1|root,2ZZE5@2|Bacteria,1N02Q@1224|Proteobacteria,2UCCB@28211|Alphaproteobacteria,3K08E@41294|Bradyrhizobiaceae
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.521004-CDS-P-wetherbeei_contig56711:114..3301683186842.521004-CDS-P-wetherbeei_contig56711:114..330Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56711 115..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56711.1.1prot_P-wetherbeei_contig56711.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56711 115..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56711.1.1

>prot_P-wetherbeei_contig56711.1.1 ID=prot_P-wetherbeei_contig56711.1.1|Name=mRNA_P-wetherbeei_contig56711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
MTHRLRLKLASLTFAVLWTGWMMWLSSPLRPAEIVILTTSGMLAGFGWHW
LYGRWYRWHFARKSFPRKRTT*
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mRNA from alignment at P-wetherbeei_contig56711:115..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56711.1.1 ID=mRNA_P-wetherbeei_contig56711.1.1|Name=mRNA_P-wetherbeei_contig56711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig56711:115..330- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCATCGCTTGCGATTGAAACTCGCTTCACTGACGTTCGCCGTTCT
GTGGACCGGCTGGATGATGTGGTTGTCCTCGCCGCTGCGGCCGGCCGAGA
TCGTCATCCTTACGACCAGCGGCATGCTCGCCGGCTTCGGCTGGCACTGG
CTCTATGGACGCTGGTATCGCTGGCATTTCGCGCGGAAGTCCTTCCCGCG
CAAACGCACAACTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56711:115..330-

>mRNA_P-wetherbeei_contig56711.1.1 ID=mRNA_P-wetherbeei_contig56711.1.1|Name=mRNA_P-wetherbeei_contig56711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig56711:115..330- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCATCGCTTGCGATTGAAACTCGCTTCACTGACGTTCGCCGTTCT
GTGGACCGGCTGGATGATGTGGTTGTCCTCGCCGCTGCGGCCGGCCGAGA
TCGTCATCCTTACGACCAGCGGCATGCTCGCCGGCTTCGGCTGGCACTGG
CTCTATGGACGCTGGTATCGCTGGCATTTCGCGCGGAAGTCCTTCCCGCG
CAAACGCACAACTTGA
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