mRNA_P-wetherbeei_contig56704.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56704.1.1
Unique NamemRNA_P-wetherbeei_contig56704.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A3A4RKU2_9BURK (Cobalamin biosynthesis protein CobD n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A3A4RKU2_9BURK)

HSP 1 Score: 281 bits (719), Expect = 4.780e-93
Identity = 142/145 (97.93%), Postives = 143/145 (98.62%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAWRST 451
            IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADT +ALRLAGRVVALLG AALLGAALAWRST
Sbjct:  182 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTTQALRLAGRVVALLGLAALLGAALAWRST 326
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A0T2YCV3_9BURK (Cobalamin biosynthesis protein CobD n=1 Tax=Hydrogenophaga sp. Root209 TaxID=1736490 RepID=A0A0T2YCV3_9BURK)

HSP 1 Score: 261 bits (666), Expect = 4.770e-85
Identity = 131/145 (90.34%), Postives = 135/145 (93.10%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAWRST 451
            +AGLPGAALYRFANTADAMWGYRGERGGRDWTW GKWAARADDVLSWLPAR+T ALLGLLG+ARGL TLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTA AL+LAGRVVALL T ALL AAL W  T
Sbjct:  179 VAGLPGAALYRFANTADAMWGYRGERGGRDWTWPGKWAARADDVLSWLPARITAALLGLLGSARGLSTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTAHALQLAGRVVALLATTALLWAALIWSFT 323
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A6P1IE88_9BURK (Cobalamin biosynthesis protein CobD n=1 Tax=Hydrogenophaga sp. PBL-H3 TaxID=434010 RepID=A0A6P1IE88_9BURK)

HSP 1 Score: 258 bits (658), Expect = 7.090e-84
Identity = 131/145 (90.34%), Postives = 135/145 (93.10%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAWRST 451
            IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPAR+TG LLG+LGAA GL  LPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGR PQA DTA+AL+LAGRVVALLG AALL A LAWR T
Sbjct:  176 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARITGVLLGVLGAAGGLHKLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRSPQAVDTAQALQLAGRVVALLGAAALLWAVLAWRIT 320
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A1B3LVJ1_9BURK (Cobalamin biosynthesis protein CobD n=1 Tax=Hydrogenophaga sp. RAC07 TaxID=1842537 RepID=A0A1B3LVJ1_9BURK)

HSP 1 Score: 255 bits (651), Expect = 8.170e-83
Identity = 130/143 (90.91%), Postives = 134/143 (93.71%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAWR 445
            IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAA G+ TL AQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGR PQAADTA+ALRLAGRVV+LL  AA+L   LAWR
Sbjct:  176 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAASGMHTLAAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRSPQAADTAQALRLAGRVVSLLTVAAVLWGVLAWR 318
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A2W4UHY4_9BURK (Cobalamin biosynthesis protein CobD n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A2W4UHY4_9BURK)

HSP 1 Score: 251 bits (640), Expect = 3.920e-81
Identity = 128/142 (90.14%), Postives = 132/142 (92.96%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAW 442
            IAGLPGAA+YRFANTADAMWGYRGER GRDWTWAGKWAARADDVLSWLPAR+TGALLGLLGAARGL TL AQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGR PQAADTA+AL+LAGRVV  L  AALL A LAW
Sbjct:  177 IAGLPGAAIYRFANTADAMWGYRGERNGRDWTWAGKWAARADDVLSWLPARITGALLGLLGAARGLHTLRAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRSPQAADTAQALQLAGRVVQALACAALLWAGLAW 318
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A6P1IW24_9BURK (Cobalamin biosynthesis protein CobD n=2 Tax=Hydrogenophaga sp. BPS33 TaxID=2651974 RepID=A0A6P1IW24_9BURK)

HSP 1 Score: 232 bits (591), Expect = 1.350e-73
Identity = 119/144 (82.64%), Postives = 126/144 (87.50%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAWRS 448
            IAGLPGAALYRFANTADAMWGYRGER GRDWTWAGKWAARADDVLSWLPARLTG LLGLLGAA  L  LPAQARRTPSPNSGWPMAAMALALDVRL KPGVYELHG G   Q+ DTA+AL+LAGRVV +L  AAL+ AA  W++
Sbjct:  186 IAGLPGAALYRFANTADAMWGYRGERHGRDWTWAGKWAARADDVLSWLPARLTGVLLGLLGAAPRLRALPAQARRTPSPNSGWPMAAMALALDVRLSKPGVYELHGDGHLAQSGDTAQALQLAGRVVRVLALAALVWAAFFWKA 329
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: UPI0008263A09 (adenosylcobinamide-phosphate synthase CbiB n=1 Tax=Hydrogenophaga palleronii TaxID=65655 RepID=UPI0008263A09)

HSP 1 Score: 229 bits (585), Expect = 1.030e-72
Identity = 117/143 (81.82%), Postives = 122/143 (85.31%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAWR 445
            +AGLPGAALYR ANTADAMWGYRGER GRDWTWAGKWAARADDVLSWLPARLTG LLGLLGA R L  LPAQA RTPSPNSGWPMAAMALALDVRLGKPGVY+LH  GR P AADTA AL+LAGRVV +L   ALL   + WR
Sbjct:  184 VAGLPGAALYRLANTADAMWGYRGERNGRDWTWAGKWAARADDVLSWLPARLTGLLLGLLGALRQLPALPAQAARTPSPNSGWPMAAMALALDVRLGKPGVYQLHDGGRRPLAADTAAALQLAGRVVVVLAALALLWTVVVWR 326
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: UPI0010F6763C (adenosylcobinamide-phosphate synthase CbiB n=1 Tax=Hydrogenophaga sp. 2FB TaxID=2502187 RepID=UPI0010F6763C)

HSP 1 Score: 224 bits (572), Expect = 7.510e-71
Identity = 116/142 (81.69%), Postives = 122/142 (85.92%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALAW 442
            IAGLPGAALYRFANTADAMWGY+GER GRDWTWAGKWAARADDVLSWLPARLTGALLGLLGA   L  LPAQARRTPSPNSGWPMAAMALALDVRL KPGVYELHG GR  QA DT +AL+LAGRVV +L   A   A L++
Sbjct:  175 IAGLPGAALYRFANTADAMWGYKGERHGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGATHRLRALPAQARRTPSPNSGWPMAAMALALDVRLCKPGVYELHGDGRLAQATDTTQALQLAGRVVRVLAAGAFAWAVLSF 316
[Close]
BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A1V3RY53_9BURK (Cobalamin biosynthesis protein CobD n=1 Tax=Hydrogenophaga sp. A37 TaxID=1945864 RepID=A0A1V3RY53_9BURK)

HSP 1 Score: 221 bits (562), Expect = 2.750e-69
Identity = 116/141 (82.27%), Postives = 122/141 (86.52%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALLGTAALLGAALA 439
            +AGLPGAALYRFANTADAMWGYRGER GRDWTWAGKWAARADDV+SWLPAR+T ALLGLLGAA  L  LPAQA RTPSPNSGWPMAAMALAL+V L KPGVY LH AGR PQAADTARAL+LAGRVV   G  ALL  A+A
Sbjct:  179 VAGLPGAALYRFANTADAMWGYRGERQGRDWTWAGKWAARADDVMSWLPARITAALLGLLGAAHTLRQLPAQAGRTPSPNSGWPMAAMALALNVSLAKPGVYTLHPAGRSPQAADTARALQLAGRVV---GALALLAGAVA 316
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BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Match: A0A2N2QP35_9PROT (Cobalamin biosynthesis protein CobD n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-9 TaxID=2013721 RepID=A0A2N2QP35_9PROT)

HSP 1 Score: 218 bits (554), Expect = 4.450e-68
Identity = 111/130 (85.38%), Postives = 115/130 (88.46%), Query Frame = 2 
Query:   17 IAGLPGAALYRFANTADAMWGYRGERGGRDWTWAGKWAARADDVLSWLPARLTGALLGLLGAARGLGTLPAQARRTPSPNSGWPMAAMALALDVRLGKPGVYELHGAGRCPQAADTARALRLAGRVVALL 406
            +AGLPGAALYRFANTADAMWGYRGER GRDWTWAGKWAARADDVLSWLPARLT ALLGLLGAA  L  LP+QA RTPSPNSGWPMAAMALAL+V L KPGVY LH AGR PQ ADTARAL+LAGRVV  L
Sbjct:  179 VAGLPGAALYRFANTADAMWGYRGERQGRDWTWAGKWAARADDVLSWLPARLTAALLGLLGAASTLKQLPSQANRTPSPNSGWPMAAMALALNVSLAKPGVYTLHPAGRRPQPADTARALQLAGRVVGAL 308
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56704.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3A4RKU2_9BURK4.780e-9397.93Cobalamin biosynthesis protein CobD n=1 Tax=Comamo... [more]
A0A0T2YCV3_9BURK4.770e-8590.34Cobalamin biosynthesis protein CobD n=1 Tax=Hydrog... [more]
A0A6P1IE88_9BURK7.090e-8490.34Cobalamin biosynthesis protein CobD n=1 Tax=Hydrog... [more]
A0A1B3LVJ1_9BURK8.170e-8390.91Cobalamin biosynthesis protein CobD n=1 Tax=Hydrog... [more]
A0A2W4UHY4_9BURK3.920e-8190.14Cobalamin biosynthesis protein CobD n=1 Tax=Burkho... [more]
A0A6P1IW24_9BURK1.350e-7382.64Cobalamin biosynthesis protein CobD n=2 Tax=Hydrog... [more]
UPI0008263A091.030e-7281.82adenosylcobinamide-phosphate synthase CbiB n=1 Tax... [more]
UPI0010F6763C7.510e-7181.69adenosylcobinamide-phosphate synthase CbiB n=1 Tax... [more]
A0A1V3RY53_9BURK2.750e-6982.27Cobalamin biosynthesis protein CobD n=1 Tax=Hydrog... [more]
A0A2N2QP35_9PROT4.450e-6885.38Cobalamin biosynthesis protein CobD n=1 Tax=Betapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56704contigP-wetherbeei_contig56704:1..454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size454
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.4239912-CDS-P-wetherbeei_contig56704:0..4531683186842.4239912-CDS-P-wetherbeei_contig56704:0..453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56704 1..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56704.1.1prot_P-wetherbeei_contig56704.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56704 1..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56704.1.1

>prot_P-wetherbeei_contig56704.1.1 ID=prot_P-wetherbeei_contig56704.1.1|Name=mRNA_P-wetherbeei_contig56704.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
PLFWFHRGPAGRGALPVRQHGRCHVGLPWRARRPRLDLGRQVGGARRRRV
VVAARPPHRRLAGPARCGARPGHTAGAGAAHPVAQQRLAHGGHGAGAGRA
AGQARRVRTAWRGTMPAGGRHRAGAAARRPRGGPARHRRAAGGRAGLEVH
T
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mRNA from alignment at P-wetherbeei_contig56704:1..454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56704.1.1 ID=mRNA_P-wetherbeei_contig56704.1.1|Name=mRNA_P-wetherbeei_contig56704.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=454bp|location=Sequence derived from alignment at P-wetherbeei_contig56704:1..454+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGTTCTGGTTTCATCGCGGGCCTGCCGGGCGCGGCGCTCTACCGGT
TCGCCAACACGGCCGATGCCATGTGGGGCTACCGTGGCGAGCGCGGCGGC
CGCGACTGGACCTGGGCCGGCAAGTGGGCGGCGCGCGCCGACGACGTGTT
GTCGTGGCTGCCCGCCCGCCTCACCGGCGCCTTGCTGGGCCTGCTCGGTG
CGGCGCGCGGCCTGGGCACACTGCCGGCGCAGGCGCGGCGCACCCCGTCG
CCCAACAGCGGCTGGCCCATGGCGGCCATGGCGCTGGCGCTGGACGTGCG
GCTGGGCAAGCCCGGCGTGTACGAACTGCATGGCGCGGGACGATGCCCGC
AGGCGGCCGACACCGCGCGGGCGCTGCGGCTCGCCGGCCGCGTGGTGGCC
CTGCTCGGCACCGCCGCGCTGCTGGGGGCCGCGCTGGCCTGGAGGTCCAC
ACCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56704:1..454+

>mRNA_P-wetherbeei_contig56704.1.1 ID=mRNA_P-wetherbeei_contig56704.1.1|Name=mRNA_P-wetherbeei_contig56704.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig56704:1..454+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCTGTTCTGGTTTCATCGCGGGCCTGCCGGGCGCGGCGCTCTACCGGT
TCGCCAACACGGCCGATGCCATGTGGGGCTACCGTGGCGAGCGCGGCGGC
CGCGACTGGACCTGGGCCGGCAAGTGGGCGGCGCGCGCCGACGACGTGTT
GTCGTGGCTGCCCGCCCGCCTCACCGGCGCCTTGCTGGGCCTGCTCGGTG
CGGCGCGCGGCCTGGGCACACTGCCGGCGCAGGCGCGGCGCACCCCGTCG
CCCAACAGCGGCTGGCCCATGGCGGCCATGGCGCTGGCGCTGGACGTGCG
GCTGGGCAAGCCCGGCGTGTACGAACTGCATGGCGCGGGACGATGCCCGC
AGGCGGCCGACACCGCGCGGGCGCTGCGGCTCGCCGGCCGCGTGGTGGCC
CTGCTCGGCACCGCCGCGCTGCTGGGGGCCGCGCTGGCCTGGAGGTCCAC
ACC
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