mRNA_P-wetherbeei_contig5670.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5670.1.1
Unique NamemRNA_P-wetherbeei_contig5670.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: UPI001447C1D4 (amiloride-sensitive amine oxidase [copper-containing] n=1 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI001447C1D4)

HSP 1 Score: 87.4 bits (215), Expect = 2.850e-18
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRPDP 249
            Y+Q  PW   + FE  I + + I NKDLV WV+VG  H+P SED P+T T G +  ++LRP+NF+DED S    ST + RP P
Sbjct:  628 YTQNNPWDPTVSFEDYIRNNEDIVNKDLVAWVTVGFLHVPHSEDIPNTATPGNSVGFILRPFNFYDEDPSLASRSTIIVRPGP 710
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: UPI000942E9FB (membrane primary amine oxidase-like n=1 Tax=Rhinolophus sinicus TaxID=89399 RepID=UPI000942E9FB)

HSP 1 Score: 82.0 bits (201), Expect = 4.410e-18
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRPD 246
            Y+Q  PW   +DF +D ++ + I  +DLV WV+ G  HIP +ED P+T T G    + LRPYNFFD+D S+D   +  FR D
Sbjct:   28 YNQNDPWAPTVDF-SDFINNETIAGEDLVAWVTAGFLHIPHAEDIPNTVTVGNGVGFFLRPYNFFDQDPSSDSADSIFFRGD 108
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: A0A836BV77_9CHLO (Amine oxidase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BV77_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.350e-17
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDAS 210
            + Q  P    L FE D +DGD++RN DLV WVS G +HIP SEDAPSTP+ G +  +VLRPYN+F EDA+
Sbjct:  563 FDQATPAEPVLRFE-DYIDGDSVRNTDLVAWVSAGTWHIPVSEDAPSTPSTGASVGFVLRPYNYFSEDAA 631
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: A0A1U7RVF9_ALLSI (Amine oxidase n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A1U7RVF9_ALLSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.350e-17
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRPD 246
            Y+Q  PW   + F AD +D + I N+DLV WVSVG  H+P +ED P+T T G    ++LRPYN+FDED S D   +  FR D
Sbjct:  639 YNQNDPWKPTVAF-ADFVDNETITNEDLVAWVSVGFLHVPHAEDIPNTVTVGNGVGFLLRPYNYFDEDPSRDSSDSVYFRAD 719
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: A0A5N3X1R0_MUNRE (Amine oxidase n=10 Tax=Cervidae TaxID=9850 RepID=A0A5N3X1R0_MUNRE)

HSP 1 Score: 83.6 bits (205), Expect = 6.440e-17
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRPD 246
            ++Q  PW   +DF AD ++ + I  KDLV WV+ G  HIP +ED P+T T G +  ++LRPYNFFDED S +   +  FR D
Sbjct:  663 FNQNDPWTPTVDF-ADFINNETIAGKDLVAWVTAGFLHIPHAEDIPNTVTVGNSVGFILRPYNFFDEDPSINSADSIYFRED 743
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: A0A7K9DJV0_9AVES (Amine oxidase (Fragment) n=1 Tax=Hemiprocne comata TaxID=243314 RepID=A0A7K9DJV0_9AVES)

HSP 1 Score: 83.2 bits (204), Expect = 8.740e-17
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRP 243
            Y+Q  PW  P+ F+A I D + I ++DLV WV+VG  H+P +ED P+T T G    ++LRP+NFFDED +       + RP
Sbjct:  564 YNQNNPWDPPVSFQAFISDDENIEDQDLVAWVTVGFLHVPHAEDIPNTATPGNAVGFLLRPFNFFDEDPAVASRGPVIVRP 644
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: A0A3Q3WET8_MOLML (Amine oxidase n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3WET8_MOLML)

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-16
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRP 243
            Y+Q  PW   + FE  I + + I N+DLV WV+VG  HIP SED P+T T G    ++LRP+NFFDED S    ST + RP
Sbjct:  626 YAQNNPWEPVVYFEDYIRNNENIVNQDLVAWVTVGFLHIPHSEDIPNTATPGNAVGFLLRPFNFFDEDPSVASRSTIIVRP 706
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: A0A7L3X1R6_9GRUI (Amine oxidase (Fragment) n=2 Tax=Rallidae TaxID=9119 RepID=A0A7L3X1R6_9GRUI)

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-16
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLF 237
            Y+Q  PW   + F AD +D + I N+DLV W+SVG  H+P +ED P+T TAG +  ++LRPYN+F+ED S D   +  F
Sbjct:  638 YNQNDPWTPTVAF-ADFIDNETITNQDLVAWISVGFLHVPHAEDIPNTVTAGNSVGFLLRPYNYFNEDPSVDSPDSVYF 715
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: UPI0020264A2A (amiloride-sensitive amine oxidase [copper-containing] isoform X1 n=2 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI0020264A2A)

HSP 1 Score: 82.8 bits (203), Expect = 1.200e-16
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRP 243
            Y Q  PW   + FE+ + D +++ ++DLV WV+VG  HIP SED P+T T G    ++LRP+NFFDED S     T + RP
Sbjct:  640 YIQNNPWQPSVSFESFLQDDESLEDQDLVAWVTVGFLHIPHSEDIPNTATPGNAVGFLLRPFNFFDEDPSVASRRTIIVRP 720
[Close]
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Match: A0A835WAH9_CHLIN (Amine oxidase n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835WAH9_CHLIN)

HSP 1 Score: 79.0 bits (193), Expect = 1.380e-16
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPTAGGTHTWVLRPYNFFDEDASTDMGSTRLFRPD 246
            + Q  P    + FE D +DGD+IR +D+V WVS G +HIP +EDAP+TP+      +VLRP+N+FDEDA+       + R D
Sbjct:   50 FDQATPKEPVVRFE-DYIDGDSIRRQDVVAWVSAGTWHIPVAEDAPNTPSTAHAVGFVLRPFNYFDEDAALHTREVTIIRND 130
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5670.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001447C1D42.850e-1848.19amiloride-sensitive amine oxidase [copper-containi... [more]
UPI000942E9FB4.410e-1845.12membrane primary amine oxidase-like n=1 Tax=Rhinol... [more]
A0A836BV77_9CHLO1.350e-1757.14Amine oxidase n=1 Tax=Edaphochlamys debaryana TaxI... [more]
A0A1U7RVF9_ALLSI1.350e-1748.78Amine oxidase n=4 Tax=Crocodylia TaxID=1294634 Rep... [more]
A0A5N3X1R0_MUNRE6.440e-1746.34Amine oxidase n=10 Tax=Cervidae TaxID=9850 RepID=A... [more]
A0A7K9DJV0_9AVES8.740e-1744.44Amine oxidase (Fragment) n=1 Tax=Hemiprocne comata... [more]
A0A3Q3WET8_MOLML1.200e-1649.38Amine oxidase n=1 Tax=Mola mola TaxID=94237 RepID=... [more]
A0A7L3X1R6_9GRUI1.200e-1646.84Amine oxidase (Fragment) n=2 Tax=Rallidae TaxID=91... [more]
UPI0020264A2A1.200e-1645.68amiloride-sensitive amine oxidase [copper-containi... [more]
A0A835WAH9_CHLIN1.380e-1645.12Amine oxidase n=1 Tax=Chlamydomonas incerta TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5670contigP-wetherbeei_contig5670:1990..2608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000013465
Preferred nameAOC1
PFAMsCu_amine_oxid,Cu_amine_oxidN2,Cu_amine_oxidN3
Model size249
Max annot lvl33208|Metazoa
KEGG rclassRC00062
KEGG koko:K11182
KEGG ReactionR01151,R02150,R02173,R04674
KEGG Pathwayko00330,ko00340,ko00380,ko01100,map00330,map00340,map00380,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005507,GO:0005509,GO:0005515,GO:0005539,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005886,GO:0005911,GO:0005923,GO:0006805,GO:0006810,GO:0006811,GO:0006812,GO:0006887,GO:0006950,GO:0006955,GO:0007154,GO:0008131,GO:0008144,GO:0008150,GO:0008152,GO:0008201,GO:0008270,GO:0009267,GO:0009410,GO:0009605,GO:0009719,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0012505,GO:0014070,GO:0015695,GO:0015893,GO:0015898,GO:0016020,GO:0016192,GO:0016491,GO:0016638,GO:0016641,GO:0030054,GO:0030141,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0033554,GO:0034774,GO:0034776,GO:0035580,GO:0035690,GO:0035874,GO:0036230,GO:0042119,GO:0042221,GO:0042493,GO:0042579,GO:0042581,GO:0042594,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043233,GO:0043296,GO:0043299,GO:0043312,GO:0044237,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0046677,GO:0046688,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0048037,GO:0048038,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0052597,GO:0052598,GO:0055114,GO:0060205,GO:0060359,GO:0061476,GO:0070013,GO:0070062,GO:0070160,GO:0070887,GO:0071241,GO:0071242,GO:0071248,GO:0071280,GO:0071310,GO:0071407,GO:0071417,GO:0071420,GO:0071466,GO:0071495,GO:0071496,GO:0071503,GO:0071504,GO:0071702,GO:0071705,GO:0071944,GO:0097184,GO:0097185,GO:0097367,GO:0097708,GO:0099503,GO:0120126,GO:1901681,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903561
Exons2
Evalue3.05e-20
EggNOG OGsCOG3733@1|root,KOG1186@2759|Eukaryota,39R8W@33154|Opisthokonta,3BJBQ@33208|Metazoa,3CUE4@33213|Bilateria,48A29@7711|Chordata,497KF@7742|Vertebrata
EC1.4.3.22
Descriptioncellular response to copper ion starvation
Cds size249
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.352939-CDS-P-wetherbeei_contig5670:1989..21561683186842.352939-CDS-P-wetherbeei_contig5670:1989..2156Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5670 1990..2156 +
1683186842.3783083-CDS-P-wetherbeei_contig5670:2526..26081683186842.3783083-CDS-P-wetherbeei_contig5670:2526..2608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5670 2527..2608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5670.1.1prot_P-wetherbeei_contig5670.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5670 1990..2608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5670.1.1

>prot_P-wetherbeei_contig5670.1.1 ID=prot_P-wetherbeei_contig5670.1.1|Name=mRNA_P-wetherbeei_contig5670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
YSQFGPWGSPLDFEADILDGDAIRNKDLVVWVSVGGFHIPTSEDAPSTPT
AGGTHTWVLRPYNFFDEDASTDMGSTRLFRPDP
back to top

mRNA from alignment at P-wetherbeei_contig5670:1990..2608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5670.1.1 ID=mRNA_P-wetherbeei_contig5670.1.1|Name=mRNA_P-wetherbeei_contig5670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=619bp|location=Sequence derived from alignment at P-wetherbeei_contig5670:1990..2608+ (Phaeothamnion wetherbeei SAG_119_79)
TACAGCCAGTTCGGACCGTGGGGGTCGCCGCTGGACTTTGAGGCGGACAT
CCTCGACGGCGATGCCATCCGGAACAAGGACCTTGTGGTGTGGGTCTCCG
TCGGCGGCTTCCATATCCCGACGTCGGAGGACGCGCCGTCCACGCCGACC
GCCGGCGGCACCCACACGTCAGTCCTGCCCCGTTTTTCTTTGATTGGCCT
CGTTCTTGTTGGTCATTCTCTTTTGTGCTTGCTTTTTCGTGATGTGCCCT
GGACTCTCGGAACGAGAACATGCTAGACTTGCGCCGGACAGCTAAAGCAG
TGTCGGGCGGCGTCGCCGCGTTCTGCACCTTCATCTTTCCGCCTCTCTCT
CTCTCTCTCTCAACCCTTACATTCTCTCCGTACATTTTCTTCCTTTCCCG
TTGCAGTCCCGATGCTTTTGCGTTCCGCTACCTATTCTCAAATTACAAAT
GTATCACCCTTCCTCAAAAACCTTTTTCTTCGAATAACCCTTCTATAAAA
CCCGCAAACATATTCACTTACGTCGCCCTGTCGGCAGGTGGGTGCTGCGG
CCATACAATTTCTTCGACGAAGACGCCTCGACGGACATGGGCAGCACGCG
CCTTTTCCGTCCGGACCCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5670:1990..2608+

>mRNA_P-wetherbeei_contig5670.1.1 ID=mRNA_P-wetherbeei_contig5670.1.1|Name=mRNA_P-wetherbeei_contig5670.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig5670:1990..2608+ (Phaeothamnion wetherbeei SAG_119_79)
TACAGCCAGTTCGGACCGTGGGGGTCGCCGCTGGACTTTGAGGCGGACAT
CCTCGACGGCGATGCCATCCGGAACAAGGACCTTGTGGTGTGGGTCTCCG
TCGGCGGCTTCCATATCCCGACGTCGGAGGACGCGCCGTCCACGCCGACC
GCCGGCGGCACCCACACGTGGGTGCTGCGGCCATACAATTTCTTCGACGA
AGACGCCTCGACGGACATGGGCAGCACGCGCCTTTTCCGTCCGGACCCG
back to top