mRNA_P-wetherbeei_contig567.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig567.2.1
Unique NamemRNA_P-wetherbeei_contig567.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig567.2.1 vs. uniprot
Match: D7G5Q2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q2_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.020e-21
Identity = 58/132 (43.94%), Postives = 83/132 (62.88%), Query Frame = 2 
Query:  368 QMVLYCEQSYLTPGASKPHVRGQTELYLRDALESVVKDIQTLAMSLSEYIDSQGRVLDVARSDVCGARDRLLLQRDQAAVTRLSALRPRVEQPLALEKIVKLRGEEMPERCRGLGKQRRVPIAARLESVYGD 763
            Q+V YCE SYL PGA+K  V  +TE YL+DAL SVV DI+ +A++L  ++++Q   ++   SDV  A+ RL   R+Q+A TRL  LR    +  A +KIV L G E P +CR L  +RR+ +  +L  +Y D
Sbjct:   35 QVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVADIEDMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRAREQSAATRLLELRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYAD 166
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BLAST of mRNA_P-wetherbeei_contig567.2.1 vs. uniprot
Match: A0A6H5JRA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA6_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.520e-20
Identity = 57/132 (43.18%), Postives = 82/132 (62.12%), Query Frame = 2 
Query:  368 QMVLYCEQSYLTPGASKPHVRGQTELYLRDALESVVKDIQTLAMSLSEYIDSQGRVLDVARSDVCGARDRLLLQRDQAAVTRLSALRPRVEQPLALEKIVKLRGEEMPERCRGLGKQRRVPIAARLESVYGD 763
            Q+V YCE SYL PGA+K  V  +TE YL+DAL SVV DI+ +A++L  ++++Q   ++   SDV  A+ RL   R+ +A TRL  LR    +  A +KIV L G E P +CR L  +RR+ +  +L  +Y D
Sbjct:   35 QVVDYCESSYLEPGANKREVWLRTEEYLKDALGSVVTDIEEMAINLLTFVNAQAEAVEKVTSDVVIAKTRLNRARELSAATRLLDLRRAAGETPARQKIVVLTGSERPTKCRPLPPRRRISLKEKLGGIYAD 166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig567.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5Q2_ECTSI1.020e-2143.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRA6_9PHAE1.520e-2043.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig567contigP-wetherbeei_contig567:1411..2365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size956
Hectar predicted targeting categoryother localisation
Exons1
Cds size585
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.2068143-CDS-P-wetherbeei_contig567:1410..19951683186842.2068143-CDS-P-wetherbeei_contig567:1410..1995Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig567 1411..1995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.2152584-UTR-P-wetherbeei_contig567:1995..23651683186842.2152584-UTR-P-wetherbeei_contig567:1995..2365Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig567 1996..2365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig567.2.1prot_P-wetherbeei_contig567.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig567 1411..1995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig567.2.1

>prot_P-wetherbeei_contig567.2.1 ID=prot_P-wetherbeei_contig567.2.1|Name=mRNA_P-wetherbeei_contig567.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=195bp
MVLYCEQSYLTPGASKPHVRGQTELYLRDALESVVKDIQTLAMSLSEYID
SQGRVLDVARSDVCGARDRLLLQRDQAAVTRLSALRPRVEQPLALEKIVK
LRGEEMPERCRGLGKQRRVPIAARLESVYGDWGAGGGGAAAATAAAPEAV
VEARPGSPGHSDALNLPMVGLMAGGRDGVPGLQRAHSFGTAPSGG
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mRNA from alignment at P-wetherbeei_contig567:1411..2365-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig567.2.1 ID=mRNA_P-wetherbeei_contig567.2.1|Name=mRNA_P-wetherbeei_contig567.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=955bp|location=Sequence derived from alignment at P-wetherbeei_contig567:1411..2365- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGAGGAGAGGATGCGGTATTATCGCGATGGCGCCCTGCAGGCGTCCC
TTGACGAGCTTTCTGGGAAGAAACCGCTAATCGATGAGGTGCTGATGCCT
ATCTCGCGTTGCTGTTGATACAGAGTCGTTTGATTTCAGTTGTGAGGAGA
GCTGGAAACTGGTTCAGGTCTTCACCTTTTGATAATTAATAAACCGTTCG
TTGGGGCAAGATTCCTTCGTTATCTGGCATATGGGGAGAGAATCGCGGTG
TGTGTTTTCTTTGTTTGCAACATGCTTTGGCATCCATTTTAACGCGTTGG
TTGCCTGCCTTATCGTTTTCTATCTACCGTCCTTCCAATTCATACAACTT
TCTTATGAAAAACAATCCAGATGGTTCTGTATTGCGAGCAGTCGTACCTG
ACCCCGGGCGCGAGCAAGCCGCATGTCCGCGGGCAGACGGAACTCTACCT
GCGGGACGCGCTCGAGTCCGTCGTCAAAGACATCCAGACGCTGGCCATGA
GCCTCTCCGAATACATCGACTCGCAGGGCCGCGTGCTCGACGTGGCGCGT
TCCGACGTCTGCGGCGCCCGCGACAGGCTGCTGCTGCAGCGCGACCAGGC
CGCCGTGACGCGCCTGTCGGCGCTGCGGCCGCGCGTGGAGCAGCCGCTGG
CGCTGGAGAAGATTGTCAAGCTGCGCGGCGAGGAGATGCCGGAGCGCTGC
CGTGGGCTCGGCAAGCAGCGCCGCGTGCCCATTGCGGCGCGCCTCGAGAG
CGTCTACGGGGACTGGGGCGCCGGCGGCGGCGGCGCGGCGGCCGCAACGG
CGGCGGCGCCCGAGGCGGTGGTCGAAGCACGGCCGGGCTCGCCGGGGCAC
AGTGACGCGCTGAACCTGCCGATGGTGGGGCTCATGGCGGGCGGCCGCGA
CGGCGTGCCGGGCCTGCAGCGCGCCCACAGCTTCGGCACCGCCCCTAGCG
GAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig567:1411..2365-

>mRNA_P-wetherbeei_contig567.2.1 ID=mRNA_P-wetherbeei_contig567.2.1|Name=mRNA_P-wetherbeei_contig567.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=585bp|location=Sequence derived from alignment at P-wetherbeei_contig567:1411..2365- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTTCTGTATTGCGAGCAGTCGTACCTGACCCCGGGCGCGAGCAAGCC
GCATGTCCGCGGGCAGACGGAACTCTACCTGCGGGACGCGCTCGAGTCCG
TCGTCAAAGACATCCAGACGCTGGCCATGAGCCTCTCCGAATACATCGAC
TCGCAGGGCCGCGTGCTCGACGTGGCGCGTTCCGACGTCTGCGGCGCCCG
CGACAGGCTGCTGCTGCAGCGCGACCAGGCCGCCGTGACGCGCCTGTCGG
CGCTGCGGCCGCGCGTGGAGCAGCCGCTGGCGCTGGAGAAGATTGTCAAG
CTGCGCGGCGAGGAGATGCCGGAGCGCTGCCGTGGGCTCGGCAAGCAGCG
CCGCGTGCCCATTGCGGCGCGCCTCGAGAGCGTCTACGGGGACTGGGGCG
CCGGCGGCGGCGGCGCGGCGGCCGCAACGGCGGCGGCGCCCGAGGCGGTG
GTCGAAGCACGGCCGGGCTCGCCGGGGCACAGTGACGCGCTGAACCTGCC
GATGGTGGGGCTCATGGCGGGCGGCCGCGACGGCGTGCCGGGCCTGCAGC
GCGCCCACAGCTTCGGCACCGCCCCTAGCGGAGGC
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