mRNA_P-wetherbeei_contig56695.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56695.1.1
Unique NamemRNA_P-wetherbeei_contig56695.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4BE25_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BE25_9PROT)

HSP 1 Score: 193 bits (491), Expect = 6.680e-58
Identity = 100/165 (60.61%), Postives = 125/165 (75.76%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPL 495
            Y+FLG+ TT+ S   +  AG+F + LAPMLLVAYITTMLS DI  A++RIK+ISETD LTG+YN+RAF ++A R    + RY   +S++MIDSDNLK VND +GH+AG+RL++L V C++  LR TDV ARYGGDEFV LLP+T  D A E AERIR  IAG PL
Sbjct:  138 YLFLGY-TTDASFLSIITAGNFAADLAPMLLVAYITTMLSQDILNAMARIKLISETDGLTGVYNMRAFNAIAVRECALAARYNRVFSLLMIDSDNLKKVNDNHGHDAGDRLIKLIVACVKHDLRATDVIARYGGDEFVCLLPETGSDAAAEAAERIRGHIAGTPL 301          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A521XH77_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XH77_9PROT)

HSP 1 Score: 192 bits (489), Expect = 1.300e-57
Identity = 97/171 (56.73%), Postives = 125/171 (73.10%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPLDTQGKQ 513
            ++ LG +++   L  +A  G  +  LAPMLLVAYITTM SADIR  L+R ++++ETD+LTG+YN+R FT LADR   Q++RY    S++MIDSDNLK VND +GHEAGNRLL++   CI   LR TDV ARYGGDEFV LLP+T PD A EVA+RI K +   PL+ +GK+
Sbjct:  135 FVLLGENSSAGELLTLAYIGGLVGLLAPMLLVAYITTMFSADIRFGLNRARLLAETDDLTGLYNMRGFTILADRLFGQAVRYNRQASLLMIDSDNLKEVNDLHGHEAGNRLLKMVAKCIGTELRHTDVLARYGGDEFVALLPETAPDRALEVAQRILKAVTTAPLEFEGKR 305          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4BDX0_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_26 TaxID=1797492 RepID=A0A1F4BDX0_9PROT)

HSP 1 Score: 192 bits (488), Expect = 1.840e-57
Identity = 94/170 (55.29%), Postives = 129/170 (75.88%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPLDTQGK 510
            YI+LG+   ++ +  +      ++Q++PMLLVAYITTMLSADIR A   +K++SETDELTG+ N+RAF ++A+R   Q+ RY   +S++M+DSD+LK VND +GHE GNRLL+LTV CI+  LR+TD+ ARYGGDEFV+LLP+T   GA  VA+RIRK++   PL T+GK
Sbjct:  135 YIWLGYPQKHEDVLSLPFGARLLAQISPMLLVAYITTMLSADIRRAYGHMKVLSETDELTGVLNMRAFAAVAERVFFQAERYARPFSVLMVDSDSLKTVNDNHGHETGNRLLKLTVECIRGQLRQTDLIARYGGDEFVVLLPETPCSGAVGVADRIRKSMESAPLSTRGK 304          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4CKH6_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4CKH6_9PROT)

HSP 1 Score: 188 bits (478), Expect = 5.830e-56
Identity = 97/170 (57.06%), Postives = 122/170 (71.76%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPLDTQGK 510
            ++ LG    +  L  +A  G  ++QLAPMLLVAYITTM SADIR  L+R +++SETD+LTGIYN+R F  +A R  +Q++RY    S++M DSDNLK VND +GHEAGNRLL+L   CI+  LR TDV ARYGGDEFV LLP+     A EVA+RI KTIA  PL+ +GK
Sbjct:  135 FVLLGDPPPSGGLLSLAYIGGLVAQLAPMLLVAYITTMFSADIRFGLNRARLLSETDDLTGIYNMRGFAIVAGRLFEQAVRYNRPASVLMFDSDNLKAVNDLHGHEAGNRLLKLVAKCIETELRHTDVLARYGGDEFVALLPEAPAAKALEVAQRIIKTIATTPLEFEGK 304          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4CWX6_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4CWX6_9PROT)

HSP 1 Score: 187 bits (475), Expect = 1.690e-55
Identity = 94/170 (55.29%), Postives = 127/170 (74.71%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPLDTQGK 510
            Y++LG+     ++ + + A    +Q+AP+LLVAYITTMLSADIR AL++IK++SETDELTG+YN RA   +++R  KQ+ RY   +S++MIDSD+LK VND+YGHEAGNRLL+L V CIQ  LRE D+  RYGGDEF+++LP+T   GA  VA RIR++I   PL  + K
Sbjct:  135 YVWLGYEGRAYAMGFSSYATTLAAQIAPLLLVAYITTMLSADIRRALTQIKLLSETDELTGVYNKRAIDIMSERVSKQAARYARPFSVLMIDSDSLKTVNDSYGHEAGNRLLKLAVQCIQSQLREADILGRYGGDEFLVVLPETPCAGAAGVAARIRQSIESTPLSIREK 304          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4A022_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_64_12 TaxID=1797487 RepID=A0A1F4A022_9PROT)

HSP 1 Score: 187 bits (475), Expect = 1.820e-55
Identity = 95/169 (56.21%), Postives = 123/169 (72.78%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPLDTQG 507
            Y+ L  S+    +  +A   + ++ ++P+LLVAY+TTM SADIR  +++ K++SETD+LTG+YN+R F+ + DRA  QS+RY    SI+MIDSDNLK VNDTYGHEAGN LLRL   C+++ LR TDV ARYGGDEF  LLP T   GA EVAERIR +IAG PL  +G
Sbjct:  135 YVLLRDSSGEVPILSLAYGAELLAGISPLLLVAYVTTMFSADIRYGINKAKLLSETDDLTGLYNMRGFSIVLDRAFGQSVRYSRPLSILMIDSDNLKAVNDTYGHEAGNELLRLISQCVKRELRTTDVVARYGGDEFAALLPDTHNVGAQEVAERIRASIAGTPLQMRG 303          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4FHE3_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FHE3_9PROT)

HSP 1 Score: 187 bits (474), Expect = 2.710e-55
Identity = 99/170 (58.24%), Postives = 118/170 (69.41%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPLDTQGK 510
            Y+FLG       L  +  A  F ++ AP+LLVAYITTM SADIR  L R K++SETDELTG+ N+R F   A R   Q++RY    S++MIDSDNLK VND YGHEAGNRLLR     IQ  LR TDV ARYGGDEF++LLP+T   GA +VAER+R  IAGMPL  +GK
Sbjct:  140 YLFLGGGVDARELLSLRFAAGFAAEFAPVLLVAYITTMFSADIRYGLQRAKLLSETDELTGLLNMRGFAIAAHRLFGQAVRYDRPASVLMIDSDNLKRVNDDYGHEAGNRLLRQLANAIQGELRATDVPARYGGDEFIVLLPETPGKGALDVAERVRSAIAGMPLAAEGK 309          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: UPI00199F602F (GGDEF domain-containing protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI00199F602F)

HSP 1 Score: 184 bits (467), Expect = 2.810e-54
Identity = 90/159 (56.60%), Postives = 124/159 (77.99%), Query Frame = 1
Query:    4 IFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTI 480
            +F  ++  + +L  +   G+ ++  APM+LVAYITTML+ADIR A+ +IK +S+TDELTG YN+RAF+S+  RA +Q++RYGH  S+VMIDSDNLK +ND +GHE+GNRLL+  V CI++ LR +DV AR+GGDEFV+LLP+T   GA E+AERIRK +
Sbjct:  136 MFFAYNPKSKTLLALPFWGELLAISAPMILVAYITTMLAADIRHAVDKIKQVSDTDELTGTYNMRAFSSMLQRAFRQAVRYGHALSVVMIDSDNLKQINDAHGHESGNRLLQHVVRCIREQLRGSDVMARFGGDEFVVLLPETNNKGALEMAERIRKAV 294          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4DFV6_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DFV6_9PROT)

HSP 1 Score: 184 bits (467), Expect = 3.540e-54
Identity = 94/170 (55.29%), Postives = 126/170 (74.12%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPLDTQGK 510
            Y +LG+     ++ +   A    +Q+ P+LLVAYITTMLSADIR AL++IK++SETDELTGI+N RA   +++R  KQ+ RY    S++MIDSD+LK +NDTYGH+AGNRLL+LTV CIQ  LRE D+  RYGGDEF++LLP+T+  GA  VA R+R++IA  PL  + K
Sbjct:  146 YAWLGYYGRAYAMGFSFFATTLTAQVVPLLLVAYITTMLSADIRRALTQIKLLSETDELTGIFNKRAIDIVSERIFKQAARYDRRLSLLMIDSDSLKTINDTYGHDAGNRLLKLTVQCIQSQLREADIVGRYGGDEFLVLLPETRGSGAAGVAARVRQSIAATPLSIRDK 315          
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Match: A0A1F4A803_9PROT (GGDEF domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 TaxID=1797482 RepID=A0A1F4A803_9PROT)

HSP 1 Score: 183 bits (465), Expect = 6.370e-54
Identity = 93/165 (56.36%), Postives = 124/165 (75.15%), Query Frame = 1
Query:    1 YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRIKIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVNDTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAFEVAERIRKTIAGMPL 495
            +++LG+      LF  + A    +QLAP++LVAYITTMLSADIR AL +I+ +SETD+LTG+ N RA T++AD   KQ++RY   +S++MIDSD+LK VNDT+GHEAGN+LL+LTV CI+  LRE+D+ ARYGGDEF++LLP+T   GA  VA R+R  I   PL
Sbjct:  142 HVWLGYHDQAQRLFPYSFAARIATQLAPLILVAYITTMLSADIRRALMQIRSLSETDDLTGVLNRRAVTAMADHLLKQAVRYARPFSVLMIDSDSLKAVNDTHGHEAGNQLLKLTVHCIEDELRESDIVARYGGDEFLVLLPETPCSGAAGVAARVRHRIESSPL 306          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56695.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4BE25_9PROT6.680e-5860.61GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A521XH77_9PROT1.300e-5756.73GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4BDX0_9PROT1.840e-5755.29GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4CKH6_9PROT5.830e-5657.06GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4CWX6_9PROT1.690e-5555.29GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4A022_9PROT1.820e-5556.21GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4FHE3_9PROT2.710e-5558.24GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
UPI00199F602F2.810e-5456.60GGDEF domain-containing protein n=1 Tax=Prolixibac... [more]
A0A1F4DFV6_9PROT3.540e-5455.29GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]
A0A1F4A803_9PROT6.370e-5456.36GGDEF domain-containing protein n=1 Tax=Betaproteo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56695contigP-wetherbeei_contig56695:2..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog56780.SYN_01324
PFAMsGGDEF
Model size513
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.79e-51
EggNOG OGsCOG2199@1|root,COG3706@2|Bacteria,1RCC4@1224|Proteobacteria,43AED@68525|delta/epsilon subdivisions,2WQS7@28221|Deltaproteobacteria
Descriptiondiguanylate cyclase
Cds size513
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186842.0999777-CDS-P-wetherbeei_contig56695:1..5141683186842.0999777-CDS-P-wetherbeei_contig56695:1..514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56695 2..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56695.1.1prot_P-wetherbeei_contig56695.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56695 2..514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56695.1.1

>prot_P-wetherbeei_contig56695.1.1 ID=prot_P-wetherbeei_contig56695.1.1|Name=mRNA_P-wetherbeei_contig56695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
YIFLGFSTTNDSLFWVANAGDFMSQLAPMLLVAYITTMLSADIRTALSRI
KIISETDELTGIYNVRAFTSLADRAHKQSIRYGHTYSIVMIDSDNLKVVN
DTYGHEAGNRLLRLTVTCIQQGLRETDVFARYGGDEFVLLLPQTKPDGAF
EVAERIRKTIAGMPLDTQGKQ
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mRNA from alignment at P-wetherbeei_contig56695:2..514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56695.1.1 ID=mRNA_P-wetherbeei_contig56695.1.1|Name=mRNA_P-wetherbeei_contig56695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56695:2..514- (Phaeothamnion wetherbeei SAG_119_79)
TACATCTTTCTCGGTTTTTCGACCACCAATGATTCGCTGTTCTGGGTCGC CAACGCCGGCGACTTCATGTCCCAGCTCGCGCCCATGCTGCTGGTGGCAT ATATCACGACCATGCTGTCGGCCGACATCCGCACCGCGCTCTCGCGCATC AAAATCATTTCCGAGACCGACGAGCTGACCGGCATCTACAACGTGCGCGC GTTCACCTCGCTCGCCGACCGCGCTCACAAGCAGTCGATACGCTACGGCC ACACTTACAGCATCGTCATGATCGACTCCGACAACCTGAAGGTGGTCAAC GACACTTACGGCCACGAAGCCGGCAATCGCCTCTTGAGGCTGACCGTCAC TTGCATCCAGCAGGGGCTGCGCGAGACCGACGTGTTCGCGCGCTACGGCG GCGACGAATTCGTGCTGCTGCTGCCGCAGACCAAGCCGGACGGCGCGTTC GAAGTCGCCGAGCGCATTCGCAAAACCATCGCCGGCATGCCGCTCGACAC CCAGGGCAAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56695:2..514-

>mRNA_P-wetherbeei_contig56695.1.1 ID=mRNA_P-wetherbeei_contig56695.1.1|Name=mRNA_P-wetherbeei_contig56695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56695:2..514- (Phaeothamnion wetherbeei SAG_119_79)
TACATCTTTCTCGGTTTTTCGACCACCAATGATTCGCTGTTCTGGGTCGC
CAACGCCGGCGACTTCATGTCCCAGCTCGCGCCCATGCTGCTGGTGGCAT
ATATCACGACCATGCTGTCGGCCGACATCCGCACCGCGCTCTCGCGCATC
AAAATCATTTCCGAGACCGACGAGCTGACCGGCATCTACAACGTGCGCGC
GTTCACCTCGCTCGCCGACCGCGCTCACAAGCAGTCGATACGCTACGGCC
ACACTTACAGCATCGTCATGATCGACTCCGACAACCTGAAGGTGGTCAAC
GACACTTACGGCCACGAAGCCGGCAATCGCCTCTTGAGGCTGACCGTCAC
TTGCATCCAGCAGGGGCTGCGCGAGACCGACGTGTTCGCGCGCTACGGCG
GCGACGAATTCGTGCTGCTGCTGCCGCAGACCAAGCCGGACGGCGCGTTC
GAAGTCGCCGAGCGCATTCGCAAAACCATCGCCGGCATGCCGCTCGACAC
CCAGGGCAAGCAG
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