mRNA_P-wetherbeei_contig56642.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56642.1.1
Unique NamemRNA_P-wetherbeei_contig56642.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A5C7NH33_9PROT (ABC transporter ATP-binding protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NH33_9PROT)

HSP 1 Score: 237 bits (605), Expect = 1.040e-76
Identity = 117/135 (86.67%), Postives = 128/135 (94.81%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LVGLKGFEKK+PWQLSGGMQQRVSIARALSF+PQLLLMDEPFGALDEITRDRMNEELL++W +TRKTV+FVTHSIDEAVLLST+IVVMSARPGRIID+IDS LP  R+LDTRET +A ELAHRVR GL+AGHSYD
Sbjct:  139 LVGLKGFEKKYPWQLSGGMQQRVSIARALSFEPQLLLMDEPFGALDEITRDRMNEELLRIWAQTRKTVVFVTHSIDEAVLLSTRIVVMSARPGRIIDIIDSPLPPDRSLDTRETAAAQELAHRVRQGLRAGHSYD 273          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A4R6WPW2_9PROT (NitT/TauT family transport system ATP-binding protein n=2 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WPW2_9PROT)

HSP 1 Score: 231 bits (590), Expect = 2.300e-74
Identity = 113/135 (83.70%), Postives = 127/135 (94.07%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LVGLKGFEKKFP+QLSGGMQQR SIARALSFDP LLLMDEPFGALDEITRDRMNEELL++W +T+KTVIFVTHSIDEAVLLST+IV+MSARPGRI++VIDS LPA R L+TRE+P A +LAHR+R+GLKAGHSYD
Sbjct:  143 LVGLKGFEKKFPFQLSGGMQQRASIARALSFDPDLLLMDEPFGALDEITRDRMNEELLRIWHETKKTVIFVTHSIDEAVLLSTRIVIMSARPGRIVEVIDSDLPAERNLETRESPVAQQLAHRIRLGLKAGHSYD 277          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A545TKR4_9PROT (ABC transporter ATP-binding protein n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TKR4_9PROT)

HSP 1 Score: 225 bits (574), Expect = 5.430e-72
Identity = 111/135 (82.22%), Postives = 121/135 (89.63%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LV LKGFEKKFPWQLSGGMQQRVSIARALSF+P LLLMDEPFGALDEITRD +NE+LL++WEKT+KTV+FVTHSI EAV LS+KIVVMS RPGRIIDVID  LP  RTLD RETP  LE+AHRVR GL+AGHSYD
Sbjct:  141 LVNLKGFEKKFPWQLSGGMQQRVSIARALSFEPDLLLMDEPFGALDEITRDHLNEQLLRLWEKTQKTVVFVTHSIPEAVFLSSKIVVMSPRPGRIIDVIDCNLPPDRTLDARETPEFLEIAHRVREGLRAGHSYD 275          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A2W2AT66_9HYPH (ABC transporter ATP-binding protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2AT66_9HYPH)

HSP 1 Score: 219 bits (558), Expect = 8.300e-70
Identity = 105/135 (77.78%), Postives = 122/135 (90.37%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LV LKGFEKK+PWQLSGGMQQRVSIARAL+FDP+LLLMDEPFGALDEI RD++N++LL++W++T+KTV+FVTHSI EAV LSTKIVVMS RPGRIIDVI++ LP  RTLD RETP  L +AHRVR GLKAGHSY+
Sbjct:  123 LVNLKGFEKKYPWQLSGGMQQRVSIARALAFDPKLLLMDEPFGALDEIVRDKLNQQLLELWDRTKKTVVFVTHSIPEAVFLSTKIVVMSPRPGRIIDVIETNLPKNRTLDIRETPEFLAIAHRVREGLKAGHSYE 257          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: UPI001A0286F7 (ABC transporter ATP-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A0286F7)

HSP 1 Score: 214 bits (546), Expect = 3.370e-69
Identity = 103/135 (76.30%), Postives = 118/135 (87.41%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LV L GFEKKFPWQLSGGMQQR SIARAL FDP+LLLMDEPFGALDEI RD +NE+LL++W+KTRKTV+FVTHSI EAV LST+IVVMS RPGR+ID+I++  P  R+LD RETP  LE+AHRVR GL+AGHSYD
Sbjct:   36 LVDLAGFEKKFPWQLSGGMQQRASIARALCFDPELLLMDEPFGALDEIVRDHLNEQLLKLWDKTRKTVVFVTHSIPEAVFLSTRIVVMSPRPGRVIDIIETDFPRDRSLDIRETPGFLEVAHRVREGLRAGHSYD 170          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A5C5SHD9_9HYPH (ABC transporter ATP-binding protein n=1 Tax=Reyranella sp. CPCC 100927 TaxID=2599616 RepID=A0A5C5SHD9_9HYPH)

HSP 1 Score: 217 bits (553), Expect = 7.580e-69
Identity = 107/135 (79.26%), Postives = 119/135 (88.15%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LVGLKGFE KFPWQLSGGMQQRVSIARAL F+P LLLMDEPFGALDEITRD +NE LL++WE+T+ TVIFVTHSI EAV LS +IVVMS RPGRI++VIDS LP  RTLD RETP+ LE+AHRVRV L+AGHSYD
Sbjct:  138 LVGLKGFEGKFPWQLSGGMQQRVSIARALGFEPALLLMDEPFGALDEITRDHLNEHLLRLWERTQVTVIFVTHSIPEAVFLSNRIVVMSPRPGRIVEVIDSDLPPDRTLDVRETPAFLEIAHRVRVALRAGHSYD 272          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A2S9QFK2_9HYPH (ABC transporter domain-containing protein n=4 Tax=Labrys TaxID=204476 RepID=A0A2S9QFK2_9HYPH)

HSP 1 Score: 217 bits (553), Expect = 8.840e-69
Identity = 106/135 (78.52%), Postives = 117/135 (86.67%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LV LKGFEKKFPWQLSGGMQQR SIARALSFDP+L+LMDEPFGALDEI RD++N++LL +W  TRKTV+FVTHSI EAV LSTKIVVMS RPGRIID+ID   P  RTLD RETP  LE+AHRVR GL+AGHSYD
Sbjct:  143 LVNLKGFEKKFPWQLSGGMQQRASIARALSFDPKLMLMDEPFGALDEIVRDKLNDQLLHLWRTTRKTVVFVTHSIPEAVYLSTKIVVMSPRPGRIIDIIDCDFPRDRTLDIRETPEFLEVAHRVRDGLRAGHSYD 277          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A1H0JDW4_9HYPH (NitT/TauT family transport system ATP-binding protein n=2 Tax=Aureimonas TaxID=414371 RepID=A0A1H0JDW4_9HYPH)

HSP 1 Score: 216 bits (551), Expect = 1.020e-68
Identity = 106/135 (78.52%), Postives = 118/135 (87.41%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LVGLKGFE+KFPWQLSGGMQQR SIARALSFDPQLLLMDEPFGALDEI RDR+NEELL++W KTRKTV+FVTHSI EAV LST+IVVM+ RPGRI D++D  L   R L+ RETP  LE+AHRVR GL+AGHSYD
Sbjct:  126 LVGLKGFERKFPWQLSGGMQQRASIARALSFDPQLLLMDEPFGALDEIVRDRLNEELLKLWMKTRKTVVFVTHSIPEAVFLSTRIVVMTPRPGRITDIVDCDLGPDRPLEIRETPRFLEIAHRVREGLRAGHSYD 260          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A2G1Z2F9_9PROT (ABC transporter-like protein n=1 Tax=Sneathiella sp. TaxID=1964365 RepID=A0A2G1Z2F9_9PROT)

HSP 1 Score: 216 bits (550), Expect = 2.370e-68
Identity = 104/135 (77.04%), Postives = 121/135 (89.63%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LV L+GFEKKFPWQLSGGMQQRVSIARAL+ +P LLLMDEPFGALDEITRD +NE+LLQ+W++T+KTV+FVTHSI EAV LS+KIVVMS RPG+IID+IDS LP  RTLD RETP  LE++HRVR GL++GHSYD
Sbjct:  141 LVNLEGFEKKFPWQLSGGMQQRVSIARALAVEPDLLLMDEPFGALDEITRDHLNEQLLQLWDQTKKTVVFVTHSIPEAVFLSSKIVVMSPRPGKIIDIIDSGLPRDRTLDIRETPEFLEISHRVREGLRSGHSYD 275          
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Match: A0A512DM20_9PROT (Sulfonate ABC transporter ATP-binding lipoprotein n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DM20_9PROT)

HSP 1 Score: 216 bits (550), Expect = 2.520e-68
Identity = 108/135 (80.00%), Postives = 118/135 (87.41%), Query Frame = 1
Query:    1 LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITRDRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVIDSTLPATRTLDTRETPSALELAHRVRVGLKAGHSYD 405
            LVGLKGFE+KFPWQLSGGMQQRVSIARALSF+P LLLMDEPFGALDEITRD +N  LL++WEKT  TVIFVTHSI EAV LS+KIVVMS RPGRI++VIDS LP  R LD RETP  LE+AHRVRV L+AGHSYD
Sbjct:  144 LVGLKGFERKFPWQLSGGMQQRVSIARALSFEPALLLMDEPFGALDEITRDNLNVHLLRLWEKTGITVIFVTHSIPEAVFLSSKIVVMSPRPGRILEVIDSDLPTDRDLDARETPEFLEIAHRVRVALRAGHSYD 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56642.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7NH33_9PROT1.040e-7686.67ABC transporter ATP-binding protein n=1 Tax=Rhodos... [more]
A0A4R6WPW2_9PROT2.300e-7483.70NitT/TauT family transport system ATP-binding prot... [more]
A0A545TKR4_9PROT5.430e-7282.22ABC transporter ATP-binding protein n=1 Tax=Denitr... [more]
A0A2W2AT66_9HYPH8.300e-7077.78ABC transporter ATP-binding protein n=1 Tax=Aestua... [more]
UPI001A0286F73.370e-6976.30ABC transporter ATP-binding protein n=1 Tax=Proteo... [more]
A0A5C5SHD9_9HYPH7.580e-6979.26ABC transporter ATP-binding protein n=1 Tax=Reyran... [more]
A0A2S9QFK2_9HYPH8.840e-6978.52ABC transporter domain-containing protein n=4 Tax=... [more]
A0A1H0JDW4_9HYPH1.020e-6878.52NitT/TauT family transport system ATP-binding prot... [more]
A0A2G1Z2F9_9PROT2.370e-6877.04ABC transporter-like protein n=1 Tax=Sneathiella s... [more]
A0A512DM20_9PROT2.520e-6880.00Sulfonate ABC transporter ATP-binding lipoprotein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56642contigP-wetherbeei_contig56642:3..410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380391.JIAS01000013_gene3602
PFAMsABC_tran
Model size408
Max annot lvl204441|Rhodospirillales
KEGG koko:K02049
KEGG TC3.A.1.16,3.A.1.17
KEGG ModuleM00188
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.55e-79
EggNOG OGsCOG1116@1|root,COG1116@2|Bacteria,1MUIM@1224|Proteobacteria,2TRHM@28211|Alphaproteobacteria,2JQ04@204441|Rhodospirillales
DescriptionABC transporter
Cds size408
COG categoryP
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.6019056-CDS-P-wetherbeei_contig56642:2..4101683186841.6019056-CDS-P-wetherbeei_contig56642:2..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56642 3..410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56642.1.1prot_P-wetherbeei_contig56642.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56642 3..410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56642.1.1

>prot_P-wetherbeei_contig56642.1.1 ID=prot_P-wetherbeei_contig56642.1.1|Name=mRNA_P-wetherbeei_contig56642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
LVGLKGFEKKFPWQLSGGMQQRVSIARALSFDPQLLLMDEPFGALDEITR
DRMNEELLQVWEKTRKTVIFVTHSIDEAVLLSTKIVVMSARPGRIIDVID
STLPATRTLDTRETPSALELAHRVRVGLKAGHSYD*
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mRNA from alignment at P-wetherbeei_contig56642:3..410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56642.1.1 ID=mRNA_P-wetherbeei_contig56642.1.1|Name=mRNA_P-wetherbeei_contig56642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig56642:3..410+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTCGGCCTCAAGGGCTTCGAGAAGAAGTTTCCCTGGCAGCTCTCCGG CGGCATGCAGCAGCGCGTCTCCATCGCCCGCGCTTTGTCGTTCGATCCGC AATTGCTGCTGATGGACGAACCGTTCGGCGCGCTGGACGAGATCACCCGC GACCGCATGAACGAGGAGCTGCTCCAGGTCTGGGAAAAGACCCGTAAGAC CGTCATCTTCGTCACCCACTCGATCGACGAGGCGGTGCTGCTCTCCACCA AGATCGTGGTGATGAGCGCACGACCGGGCCGCATCATCGACGTGATCGAC AGCACCCTGCCGGCCACCCGCACCCTCGATACGCGCGAGACGCCCTCGGC CCTGGAACTGGCCCATCGCGTCCGCGTCGGCCTGAAGGCCGGGCATTCGT ATGATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56642:3..410+

>mRNA_P-wetherbeei_contig56642.1.1 ID=mRNA_P-wetherbeei_contig56642.1.1|Name=mRNA_P-wetherbeei_contig56642.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig56642:3..410+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGTCGGCCTCAAGGGCTTCGAGAAGAAGTTTCCCTGGCAGCTCTCCGG
CGGCATGCAGCAGCGCGTCTCCATCGCCCGCGCTTTGTCGTTCGATCCGC
AATTGCTGCTGATGGACGAACCGTTCGGCGCGCTGGACGAGATCACCCGC
GACCGCATGAACGAGGAGCTGCTCCAGGTCTGGGAAAAGACCCGTAAGAC
CGTCATCTTCGTCACCCACTCGATCGACGAGGCGGTGCTGCTCTCCACCA
AGATCGTGGTGATGAGCGCACGACCGGGCCGCATCATCGACGTGATCGAC
AGCACCCTGCCGGCCACCCGCACCCTCGATACGCGCGAGACGCCCTCGGC
CCTGGAACTGGCCCATCGCGTCCGCGTCGGCCTGAAGGCCGGGCATTCGT
ATGATTAG
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