mRNA_P-wetherbeei_contig56585.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig56585.1.1
Unique Name	mRNA_P-wetherbeei_contig56585.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: Q89EZ5_BRADU (Bll6906 protein n=216 Tax=Proteobacteria TaxID=1224 RepID=Q89EZ5_BRADU)

HSP 1 Score: 333 bits (854), Expect = 3.260e-112
Identity = 161/171 (94.15%), Postives = 168/171 (98.25%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGEIASRPPTLG 513
            LATALSFT+ATLI+QAVINVNRVPTGNLGQTAAPADIYRT+DGWVLCQVTGHPLFKRWAKLMGEE+ WLNDPRFADDISRGNNGPVISERMARWCA+RTTQEAVDTLG AMIPTGPVLSPQQALDHPHIRAAGF+QDVDYPGLPK APVARAAVRLSETPG+IASRPPTLG
Sbjct:  199 LATALSFTNATLIQQAVINVNRVPTGNLGQTAAPADIYRTRDGWVLCQVTGHPLFKRWAKLMGEEDQWLNDPRFADDISRGNNGPVISERMARWCAERTTQEAVDTLGKAMIPTGPVLSPQQALDHPHIRAAGFMQDVDYPGLPKPAPVARAAVRLSETPGDIASRPPTLG 369

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: A0A1I3G588_9BRAD (Crotonobetainyl-CoA:carnitine CoA-transferase CaiB n=32 Tax=Bradyrhizobium TaxID=374 RepID=A0A1I3G588_9BRAD)

HSP 1 Score: 316 bits (809), Expect = 1.310e-105
Identity = 152/162 (93.83%), Postives = 159/162 (98.15%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGE 486
            LATALSFT+ATLIEQAVINVNRVP+GNLGQTAAPADIYRT+DGWVLCQVTGHPLFKRWAKLMGEE+ WLNDPRFADDISRGNNGPVISERMARWCA+RTTQEAVDTLG AMIPTGPVLSPQQALDHPHIRAAGF+QDVDYPGLPK APVARAAVRLSETPG+
Sbjct:  199 LATALSFTNATLIEQAVINVNRVPSGNLGQTAAPADIYRTRDGWVLCQVTGHPLFKRWAKLMGEEDQWLNDPRFADDISRGNNGPVISERMARWCAERTTQEAVDTLGKAMIPTGPVLSPQQALDHPHIRAAGFMQDVDYPGLPKPAPVARAAVRLSETPGD 360

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: A0A533JBF4_9BRAD (CoA transferase n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533JBF4_9BRAD)

HSP 1 Score: 315 bits (808), Expect = 3.080e-105
Identity = 151/171 (88.30%), Postives = 161/171 (94.15%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGEIASRPPTLG 513
            L TALSFT+ATLIEQAVI+ NRVPTGNLGQTAAP DIYRTKDGWVLCQVTGHPLF RWA+LMGEEE WL+DPRFADD+ RG NGP++S RMARWCA+RTTQEAVDTLG AMIP GPVLSPQQALDHPHIRAAGFLQ+VDYPGLPKSAPVARAA+RLSETPGEIASRPPTLG
Sbjct:  199 LHTALSFTNATLIEQAVISANRVPTGNLGQTAAPVDIYRTKDGWVLCQVTGHPLFIRWARLMGEEEQWLSDPRFADDLKRGENGPIVSARMARWCAERTTQEAVDTLGKAMIPAGPVLSPQQALDHPHIRAAGFLQEVDYPGLPKSAPVARAAIRLSETPGEIASRPPTLG 369

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: UPI001FD8BA9E (CoA transferase n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI001FD8BA9E)

HSP 1 Score: 305 bits (780), Expect = 1.530e-102
Identity = 145/160 (90.62%), Postives = 155/160 (96.88%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETP 480
            LATALSFT+ATLIEQAVI+VNRVPTGNLGQTAAPADIYRT+DGWVLCQVTGHPLFKRWA+LMGEEE+WLNDPRFADDISRGNNG ++SERMARWCA+R+TQEAVD LG AMIPTGPVLSPQQALDHPHIRAAGF+QDVDYPGLPK APV RAAVRLSETP
Sbjct:  126 LATALSFTNATLIEQAVISVNRVPTGNLGQTAAPADIYRTRDGWVLCQVTGHPLFKRWARLMGEEEIWLNDPRFADDISRGNNGRIVSERMARWCAERSTQEAVDALGQAMIPTGPVLSPQQALDHPHIRAAGFMQDVDYPGLPKPAPVTRAAVRLSETP 285

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: A0A1H5EGR3_9BRAD (Crotonobetainyl-CoA:carnitine CoA-transferase CaiB n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H5EGR3_9BRAD)

HSP 1 Score: 300 bits (767), Expect = 4.880e-99
Identity = 147/171 (85.96%), Postives = 156/171 (91.23%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGEIASRPPTLG 513
            LATALSFT+ATLIEQAVI  NRVPTGNLGQTAAP DIYRTKDGWVLCQVTGHPLF RWA LMGE+  WL DPRFADD+ RG NGPVISERMARWCA+RT+QEA+DTLG AMIP GPVLSPQQALDHPHIRAAGFLQ+VDYPGLPK AP+ARAAVRLSETPGEI +R PTLG
Sbjct:  199 LATALSFTNATLIEQAVIAANRVPTGNLGQTAAPIDIYRTKDGWVLCQVTGHPLFIRWANLMGEDH-WLQDPRFADDLKRGENGPVISERMARWCAERTSQEALDTLGKAMIPAGPVLSPQQALDHPHIRAAGFLQEVDYPGLPKPAPLARAAVRLSETPGEIVTRAPTLG 368

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: A0A525JU71_BRASZ (CoA transferase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JU71_BRASZ)

HSP 1 Score: 299 bits (766), Expect = 7.130e-99
Identity = 143/171 (83.63%), Postives = 155/171 (90.64%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGEIASRPPTLG 513
            LATALSFT+ATLIEQAVI VNRVPTGNLGQTAAPADIYRT+DGWVLCQVTGHPLF RWA+LMGEE+ WL DPRF+ D+ RG NGP+IS+RMARWCA+RTTQ+AVDTLG A IP GPVLSPQQALDHPHIRAAGF+  VDYPGLP  AP+ARAAVRLS TPGEI SRPPTLG
Sbjct:  199 LATALSFTNATLIEQAVIGVNRVPTGNLGQTAAPADIYRTRDGWVLCQVTGHPLFVRWARLMGEEDRWLKDPRFSSDLKRGENGPLISQRMARWCAERTTQDAVDTLGTAQIPAGPVLSPQQALDHPHIRAAGFMTSVDYPGLPSPAPLARAAVRLSLTPGEIVSRPPTLG 369

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: UPI0018D5FC83 (CoA transferase n=1 Tax=Bradyrhizobium diversitatis TaxID=2755406 RepID=UPI0018D5FC83)

HSP 1 Score: 249 bits (637), Expect = 2.020e-81
Identity = 123/150 (82.00%), Postives = 130/150 (86.67%), Query Frame = 1

Query:   22 THATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLS 471
            T A LIEQAVI VNRVPTGNLGQTAAPADIYRT+DGWVLCQVTGHPLFKRWA+LM   +        +  ISRGNNG +ISERMARWCA+RTTQEAVD LG AMIPTGPVLSPQQALDHPHIRAAGF+QDVDYPGLPK APVARAAVRLS
Sbjct:   93 TLAALIEQAVIGVNRVPTGNLGQTAAPADIYRTRDGWVLCQVTGHPLFKRWARLMSSAKRGSFSQTSSSPISRGNNGRIISERMARWCAERTTQEAVDALGQAMIPTGPVLSPQQALDHPHIRAAGFMQDVDYPGLPKHAPVARAAVRLS 242

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: A0A7C2QWQ0_9HYPH (CoA transferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QWQ0_9HYPH)

HSP 1 Score: 242 bits (618), Expect = 1.620e-76
Identity = 120/171 (70.18%), Postives = 134/171 (78.36%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGEIASRPPTLG 513
            LATA++F +A LIEQAVI  NRVPTGN GQTAAP DI+RT+DGWVLCQV G PLFKRWA+LMGE   WL DPRF DDISRG+NG VISERM RWCA+RTT EA+D LG A IP GPVL PQQ LD PHI+A GF Q  ++PG P+ AP+ARA V LS TPG I  R P LG
Sbjct:  199 LATAVTFGNALLIEQAVIAPNRVPTGNRGQTAAPVDIFRTRDGWVLCQVIGQPLFKRWAELMGEPH-WLTDPRFKDDISRGDNGAVISERMGRWCAERTTAEALDILGKARIPAGPVLKPQQTLDDPHIQAMGFFQPTEFPGAPRPAPIARAPVWLSATPGSIRHRAPLLG 368

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: A0A7V4P826_9PLAN (CoA transferase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7V4P826_9PLAN)

HSP 1 Score: 239 bits (611), Expect = 1.840e-75
Identity = 113/171 (66.08%), Postives = 134/171 (78.36%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGEIASRPPTLG 513
            LATA++F +A LIEQAVI  NRVPTGN GQT+ P D++RT+DGW+LCQV G+PLFKRWAKLMGE+  WL DPRF DDISRG+NG ++SERM RWCA+RTT EA++ LG A IP GP+L PQQ LD PHI A GF Q  +YPG P+ AP+A+  V LS TPG I  R PTLG
Sbjct:  199 LATAVTFGNALLIEQAVIQANRVPTGNRGQTSGPVDLFRTRDGWILCQVVGNPLFKRWAKLMGEDH-WLTDPRFKDDISRGDNGAILSERMGRWCAERTTAEALEILGAAKIPAGPLLKPQQTLDDPHIEAVGFFQPTEYPGAPRPAPIAKVPVWLSGTPGSIRRRAPTLG 368

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BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Match: A0A6N6SS43_9HYPH (CoA transferase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SS43_9HYPH)

HSP 1 Score: 237 bits (605), Expect = 1.480e-74
Identity = 117/171 (68.42%), Postives = 133/171 (77.78%), Query Frame = 1

Query:    1 LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVTGHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTTQEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVARAAVRLSETPGEIASRPPTLG 513
            LATA++F +A LIEQAVI  +RVPTGN GQTAAP DI+RTKDGW+L QV G PL+KRWA LMGE   WL DPRF DDISRG+NG VISERM+RWCA+RTT EA+  LG AMIP GPVL PQQ LD PHI+A GF Q  ++PG PK AP+A+  V LS TPG I  R PTLG
Sbjct:  199 LATAVTFGNAMLIEQAVIKPDRVPTGNRGQTAAPVDIFRTKDGWILVQVIGQPLYKRWADLMGESH-WLTDPRFKDDISRGDNGAVISERMSRWCAERTTAEALGILGKAMIPAGPVLKPQQTLDDPHIQAMGFFQPTEFPGAPKPAPIAKVPVWLSATPGSIRRRAPTLG 368

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig56585.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Q89EZ5_BRADU	3.260e-112	94.15	Bll6906 protein n=216 Tax=Proteobacteria TaxID=122...	[more]
A0A1I3G588_9BRAD	1.310e-105	93.83	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB...	[more]
A0A533JBF4_9BRAD	3.080e-105	88.30	CoA transferase n=1 Tax=Bradyrhizobium icense TaxI...	[more]
UPI001FD8BA9E	1.530e-102	90.63	CoA transferase n=1 Tax=Bradyrhizobium guangdongen...	[more]
A0A1H5EGR3_9BRAD	4.880e-99	85.96	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB...	[more]
A0A525JU71_BRASZ	7.130e-99	83.63	CoA transferase n=1 Tax=Bradyrhizobium sp. TaxID=3...	[more]
UPI0018D5FC83	2.020e-81	82.00	CoA transferase n=1 Tax=Bradyrhizobium diversitati...	[more]
A0A7C2QWQ0_9HYPH	1.620e-76	70.18	CoA transferase n=1 Tax=Hyphomicrobiales bacterium...	[more]
A0A7V4P826_9PLAN	1.840e-75	66.08	CoA transferase n=1 Tax=Planctomycetaceae bacteriu...	[more]
A0A6N6SS43_9HYPH	1.480e-74	68.42	CoA transferase n=1 Tax=Hyphomicrobiaceae bacteriu...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig56585	contig	P-wetherbeei_contig56585:3..515 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	335659.S23_53050
Preferred name	MA20_17775
PFAMs	CoA_transf_3
Model size	513
Max annot lvl	28211\|Alphaproteobacteria
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.14e-114
EggNOG OGs	COG1804@1\|root,COG1804@2\|Bacteria,1MVK4@1224\|Proteobacteria,2TWRE@28211\|Alphaproteobacteria,3JSRH@41294\|Bradyrhizobiaceae
Description	CoA-transferase family III
Cds size	513
COG category	C

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186841.00662-CDS-P-wetherbeei_contig56585:2..515	1683186841.00662-CDS-P-wetherbeei_contig56585:2..515	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig56585 3..515 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig56585.1.1	prot_P-wetherbeei_contig56585.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig56585 3..515 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig56585:3..515+
coding sequence from alignment at P-wetherbeei_contig56585:3..515+

protein sequence of mRNA_P-wetherbeei_contig56585.1.1

>prot_P-wetherbeei_contig56585.1.1 ID=prot_P-wetherbeei_contig56585.1.1|Name=mRNA_P-wetherbeei_contig56585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
LATALSFTHATLIEQAVINVNRVPTGNLGQTAAPADIYRTKDGWVLCQVT
GHPLFKRWAKLMGEEELWLNDPRFADDISRGNNGPVISERMARWCADRTT
QEAVDTLGNAMIPTGPVLSPQQALDHPHIRAAGFLQDVDYPGLPKSAPVA
RAAVRLSETPGEIASRPPTLG

mRNA from alignment at P-wetherbeei_contig56585:3..515+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig56585.1.1 ID=mRNA_P-wetherbeei_contig56585.1.1|Name=mRNA_P-wetherbeei_contig56585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56585:3..515+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCACCGCGCTGTCTTTCACCCACGCCACGCTGATCGAGCAGGCCGT
CATCAACGTCAATCGCGTGCCGACGGGCAATCTCGGCCAGACCGCGGCGC
CGGCCGATATCTACCGCACCAAGGACGGCTGGGTGCTATGCCAGGTGACC
GGGCATCCGCTGTTCAAGCGTTGGGCGAAGCTGATGGGCGAGGAGGAGCT
GTGGCTGAACGATCCGCGCTTTGCCGACGACATCAGCCGCGGCAACAATG
GCCCGGTCATCAGCGAGCGCATGGCGCGCTGGTGCGCGGATCGCACCACG
CAGGAGGCCGTCGATACTCTGGGCAACGCCATGATTCCGACCGGGCCGGT
GCTGAGCCCGCAACAGGCGCTCGATCATCCGCATATCCGCGCCGCCGGCT
TCCTGCAGGACGTCGACTATCCCGGCTTGCCGAAATCCGCGCCGGTCGCC
CGTGCCGCGGTCCGGCTGTCCGAAACGCCGGGCGAGATCGCAAGCCGGCC
GCCGACGCTCGGC

Coding sequence (CDS) from alignment at P-wetherbeei_contig56585:3..515+

>mRNA_P-wetherbeei_contig56585.1.1 ID=mRNA_P-wetherbeei_contig56585.1.1|Name=mRNA_P-wetherbeei_contig56585.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56585:3..515+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCACCGCGCTGTCTTTCACCCACGCCACGCTGATCGAGCAGGCCGT
CATCAACGTCAATCGCGTGCCGACGGGCAATCTCGGCCAGACCGCGGCGC
CGGCCGATATCTACCGCACCAAGGACGGCTGGGTGCTATGCCAGGTGACC
GGGCATCCGCTGTTCAAGCGTTGGGCGAAGCTGATGGGCGAGGAGGAGCT
GTGGCTGAACGATCCGCGCTTTGCCGACGACATCAGCCGCGGCAACAATG
GCCCGGTCATCAGCGAGCGCATGGCGCGCTGGTGCGCGGATCGCACCACG
CAGGAGGCCGTCGATACTCTGGGCAACGCCATGATTCCGACCGGGCCGGT
GCTGAGCCCGCAACAGGCGCTCGATCATCCGCATATCCGCGCCGCCGGCT
TCCTGCAGGACGTCGACTATCCCGGCTTGCCGAAATCCGCGCCGGTCGCC
CGTGCCGCGGTCCGGCTGTCCGAAACGCCGGGCGAGATCGCAAGCCGGCC
GCCGACGCTCGGC