mRNA_P-wetherbeei_contig56583.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56583.1.1
Unique NamemRNA_P-wetherbeei_contig56583.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56583.1.1 vs. uniprot
Match: A0A5P6P6C0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium betae TaxID=244734 RepID=A0A5P6P6C0_9BRAD)

HSP 1 Score: 60.8 bits (146), Expect = 1.310e-10
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   34 RCHTPRMRGIQYAAASRPITGVSGILDRPLQCAIAHKADDDTEFIDA 174
            RCH+PR RGIQYAAASR      G+LDRP  CAIAH A DDTE + A
Sbjct:   19 RCHSPRRRGIQYAAASRFNHRRHGVLDRPPLCAIAHWAGDDTECVAA 65
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BLAST of mRNA_P-wetherbeei_contig56583.1.1 vs. uniprot
Match: A0A7S7TJ40_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. CCBAU 51753 TaxID=1325100 RepID=A0A7S7TJ40_9BRAD)

HSP 1 Score: 55.5 bits (132), Expect = 8.890e-9
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   34 RCHTPRMRGIQYAAASRPITGVSGILDRPLQCAIAHKADDDTEFI 168
            RCH+PR RGIQYAAASR IT  SGILDRP++      + DD+E++
Sbjct:    7 RCHSPRKRGIQYAAASRSITIASGILDRPIE------SGDDSEYV 45
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BLAST of mRNA_P-wetherbeei_contig56583.1.1 vs. uniprot
Match: A0A160V056_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. G22 TaxID=1839752 RepID=A0A160V056_9BRAD)

HSP 1 Score: 53.9 bits (128), Expect = 2.950e-8
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = -2 
Query:   45 IAHWSGRSSIPETPVIGREAAAYWIPRMRG 134
            IA  SGRSSIPE PVI REAAAYWIPR+RG
Sbjct:   29 IARESGRSSIPEAPVIPREAAAYWIPRLRG 58
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BLAST of mRNA_P-wetherbeei_contig56583.1.1 vs. uniprot
Match: A0A845ITM7_BRAJP (Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum TaxID=375 RepID=A0A845ITM7_BRAJP)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-8
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:   38 VIPRACGVSSTPQLLGLSQASLEYWIVRSSAQLRTRRTMTPNL 166
            VIPR  G SSTP+ L +   SLEYWI R  AQLRTRRTM P++
Sbjct:   16 VIPREGGESSTPRPLRIPLPSLEYWIARPRAQLRTRRTMIPSV 58
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BLAST of mRNA_P-wetherbeei_contig56583.1.1 vs. uniprot
Match: UPI001FFF7935 (hypothetical protein n=1 Tax=Bradyrhizobium sp. 200 TaxID=2782665 RepID=UPI001FFF7935)

HSP 1 Score: 50.4 bits (119), Expect = 1.150e-6
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = -2 
Query:   42 NSVSSSALCAIAHWSGRSSIPETPVIGR-EAAAYWIPRMRGV 164
            +SVSSSALCAIAHW GRSSIPETPVI   + +    P  RG+
Sbjct:   15 HSVSSSALCAIAHWGGRSSIPETPVIEPIDRSVLDTPPSRGM 56
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BLAST of mRNA_P-wetherbeei_contig56583.1.1 vs. uniprot
Match: A0A7S7Q3Q6_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. CCBAU 51765 TaxID=1325102 RepID=A0A7S7Q3Q6_9BRAD)

HSP 1 Score: 47.4 bits (111), Expect = 1.270e-5
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 1 
Query:   34 RCHTPRMRGIQYAAASRPITGVSGILDRP 120
            RCH PR RGIQYAAASR    +SGILDRP
Sbjct:   16 RCHAPRKRGIQYAAASRGYVTLSGILDRP 44
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56583.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5P6P6C0_9BRAD1.310e-1065.96Uncharacterized protein n=1 Tax=Bradyrhizobium bet... [more]
A0A7S7TJ40_9BRAD8.890e-960.00Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A160V056_9BRAD2.950e-883.33Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A845ITM7_BRAJP6.670e-862.79Uncharacterized protein n=1 Tax=Bradyrhizobium jap... [more]
UPI001FFF79351.150e-664.29hypothetical protein n=1 Tax=Bradyrhizobium sp. 20... [more]
A0A7S7Q3Q6_9BRAD1.270e-575.86Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56583contigP-wetherbeei_contig56583:23..214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186840.975562-CDS-P-wetherbeei_contig56583:22..2141683186840.975562-CDS-P-wetherbeei_contig56583:22..214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56583 23..214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56583.1.1prot_P-wetherbeei_contig56583.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56583 23..214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56583.1.1

>prot_P-wetherbeei_contig56583.1.1 ID=prot_P-wetherbeei_contig56583.1.1|Name=mRNA_P-wetherbeei_contig56583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
RRDEAGHHRHGRCHTPRMRGIQYAAASRPITGVSGILDRPLQCAIAHKAD
DDTEFIDAPRSPP*
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mRNA from alignment at P-wetherbeei_contig56583:23..214+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56583.1.1 ID=mRNA_P-wetherbeei_contig56583.1.1|Name=mRNA_P-wetherbeei_contig56583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig56583:23..214+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCGCGACGAAGCAGGACATCACCGTCACGGAAGGTGTCATACCCCGCG
CATGCGGGGTATCCAGTACGCCGCAGCTTCTCGGCCTATCACAGGCGTCT
CTGGAATACTGGATCGTCCGCTCCAGTGCGCAATTGCGCACAAGGCGGAC
GATGACACCGAATTTATCGATGCCCCCCGCTCACCTCCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56583:23..214+

>mRNA_P-wetherbeei_contig56583.1.1 ID=mRNA_P-wetherbeei_contig56583.1.1|Name=mRNA_P-wetherbeei_contig56583.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig56583:23..214+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCGCGACGAAGCAGGACATCACCGTCACGGAAGGTGTCATACCCCGCG
CATGCGGGGTATCCAGTACGCCGCAGCTTCTCGGCCTATCACAGGCGTCT
CTGGAATACTGGATCGTCCGCTCCAGTGCGCAATTGCGCACAAGGCGGAC
GATGACACCGAATTTATCGATGCCCCCCGCTCACCTCCCTGA
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