mRNA_P-wetherbeei_contig56467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56467.1.1
Unique NamemRNA_P-wetherbeei_contig56467.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: A0A3D1IXF5_9BURK (Urea ABC transporter ATP-binding subunit UrtE n=1 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A3D1IXF5_9BURK)

HSP 1 Score: 305 bits (781), Expect = 1.600e-103
Identity = 157/171 (91.81%), Postives = 161/171 (94.15%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YGESHVIH A FELAPGAAIAVVGRNGMGKSTLLKSLIGMIP K GSI L G+ELAGLPSY RVQAGLAYVPQGRMIFSQLTVEENILTGLET RYADIPDFIY+FFPVL EM+DRKGGNLSGGQQQQLAIARAL S+PRVLILDEPTEGIQPSIIKEIARSLNALRKELG
Sbjct:   11 YGESHVIHDAEFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPTKRGSIKLAGQELAGLPSYERVQAGLAYVPQGRMIFSQLTVEENILTGLETGRYADIPDFIYEFFPVLLEMRDRKGGNLSGGQQQQLAIARALASKPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: A0A840RTI7_9BURK (Urea transport system ATP-binding protein n=1 Tax=Glaciimonas immobilis TaxID=728004 RepID=A0A840RTI7_9BURK)

HSP 1 Score: 284 bits (726), Expect = 3.790e-95
Identity = 145/171 (84.80%), Postives = 156/171 (91.23%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YGESHVI+ A+ ELAPG AIAVVGRNGMGKSTLLKS+IGM+P K+GSI L   ELAGL SY RVQAGLA+VPQGRMIFSQL+VEENILTGLET RY  IP FIY+FFPVL+EMKDRKGGNLSGGQQQQLAIARALVS+P+VLILDEPTEGIQPSIIKEIARSLNALR ELG
Sbjct:   11 YGESHVIYDASLELAPGKAIAVVGRNGMGKSTLLKSVIGMVPAKNGSIKLDAHELAGLSSYKRVQAGLAFVPQGRMIFSQLSVEENILTGLETGRYGSIPSFIYEFFPVLREMKDRKGGNLSGGQQQQLAIARALVSKPKVLILDEPTEGIQPSIIKEIARSLNALRAELG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: UPI00190BA9F3 (urea ABC transporter ATP-binding subunit UrtE n=1 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI00190BA9F3)

HSP 1 Score: 278 bits (710), Expect = 1.030e-92
Identity = 141/171 (82.46%), Postives = 153/171 (89.47%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YGES VIH  + +L  G+A AVVGRNGMGKSTLLKSLIGM+P ++G I+L GR +AGLPSY RVQAGLA+VPQGRMIFSQLTVEENILTGLET RY  IPDFIY FFPVL+EMK RKGGNLSGGQQQQLAIARALVS+P+VLILDEPTEGIQPSIIKEIARSLNALR ELG
Sbjct:   11 YGESQVIHHVSLDLPDGSATAVVGRNGMGKSTLLKSLIGMVPTRAGHISLDGRNIAGLPSYKRVQAGLAFVPQGRMIFSQLTVEENILTGLETGRYPGIPDFIYHFFPVLREMKSRKGGNLSGGQQQQLAIARALVSKPKVLILDEPTEGIQPSIIKEIARSLNALRAELG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: UPI0012920CB9 (urea ABC transporter ATP-binding subunit UrtE n=1 Tax=Paraburkholderia agricolaris TaxID=2152888 RepID=UPI0012920CB9)

HSP 1 Score: 258 bits (659), Expect = 5.930e-85
Identity = 130/171 (76.02%), Postives = 148/171 (86.55%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YGES VIH  +  +  G ++A+VGRNGMGKSTLLK++IGMI  +SGSITL G ELA  PSY RV+AGLA+VPQGRMIF QLTVEEN+LTGLET RY  IPDFIY FFPVL EM++R+GGNLSGGQQQQ+AIARALVS+P VLILDEPTEGIQPSI+KEIARSL ALR+ELG
Sbjct:   11 YGESQVIHDVSLNVGTGRSLALVGRNGMGKSTLLKAMIGMIDARSGSITLDGVELARQPSYRRVRAGLAFVPQGRMIFPQLTVEENLLTGLETGRYEKIPDFIYDFFPVLAEMRERRGGNLSGGQQQQIAIARALVSKPSVLILDEPTEGIQPSIVKEIARSLTALRRELG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: UPI0013E1A491 (urea ABC transporter ATP-binding subunit UrtE n=1 Tax=Caballeronia sp. SBC2 TaxID=2705547 RepID=UPI0013E1A491)

HSP 1 Score: 256 bits (654), Expect = 3.420e-84
Identity = 130/171 (76.02%), Postives = 148/171 (86.55%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YG+SHVIH  + E+  G A+A+VGRNGMGKSTLLKS+IGM+  + GSI L   EL+  PSY RV+AGLA+VPQGRMIF QLTVEEN+LTGLETARY+ IPDFIY+FFPVL EM  RKGGNLSGGQQQQ+AIARALVS+P +LILDEPTEGIQPSIIKEIA+SL ALRKELG
Sbjct:   11 YGQSHVIHDVSLEVPSGGAVALVGRNGMGKSTLLKSIIGMVDSRDGSIALDEVELSRQPSYKRVRAGLAFVPQGRMIFPQLTVEENLLTGLETARYSRIPDFIYEFFPVLAEMSQRKGGNLSGGQQQQIAIARALVSKPSLLILDEPTEGIQPSIIKEIAKSLVALRKELG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: A0A0P0RI80_9BURK (Urea ABC transporter, ATPase protein UrtE n=1 Tax=Paraburkholderia caribensis MBA4 TaxID=1323664 RepID=A0A0P0RI80_9BURK)

HSP 1 Score: 255 bits (651), Expect = 9.770e-84
Identity = 127/171 (74.27%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YG+SHVIH  + ++A G+A+A+VGRNGMGKSTLLKS+IGM+  + GSI+  G EL+  PSY RV+AGLA+VPQGRMIF QLTV EN+LTGLET RY  IPDFIY FFPVL EM  RKGGNLSGGQQQQ+AIARALVS+P VLILDEPTEGIQPSIIKEIA+SL +LR+ELG
Sbjct:   11 YGQSHVIHDVSLQVAEGSAVALVGRNGMGKSTLLKSIIGMVASRDGSISFNGAELSNQPSYRRVRAGLAFVPQGRMIFPQLTVHENLLTGLETGRYKRIPDFIYDFFPVLAEMSQRKGGNLSGGQQQQVAIARALVSKPNVLILDEPTEGIQPSIIKEIAKSLVSLRRELG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: A0A6S7BCB0_9BURK (High-affinity branched-chain amino acid transport ATP-binding protein LivF n=1 Tax=Pararobbsia alpina TaxID=621374 RepID=A0A6S7BCB0_9BURK)

HSP 1 Score: 253 bits (646), Expect = 5.630e-83
Identity = 129/171 (75.44%), Postives = 145/171 (84.80%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YG+SHVIH  + E+  G A+A+VGRNGMGKSTLLKS+IGM+  ++GS+ L G EL   PSY RV+AGLA+VPQGRMIF QLTVEEN+LTGLET RY  IPDFIY FFP L EM  RKGGNLSGGQQQQLAIARALVS+P VLILDEPTEGIQPSIIKE+A+SL ALRKELG
Sbjct:   11 YGQSHVIHDVSLEVRKGGAVALVGRNGMGKSTLLKSIIGMVESRNGSVALDGIELGRQPSYKRVRAGLAFVPQGRMIFPQLTVEENLLTGLETGRYGRIPDFIYDFFPGLAEMGRRKGGNLSGGQQQQLAIARALVSKPSVLILDEPTEGIQPSIIKELAKSLVALRKELG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: UPI0004848002 (urea ABC transporter ATP-binding subunit UrtE n=1 Tax=Paraburkholderia oxyphila TaxID=614212 RepID=UPI0004848002)

HSP 1 Score: 253 bits (645), Expect = 7.730e-83
Identity = 128/171 (74.85%), Postives = 146/171 (85.38%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YGESHV+H  +  + PG+A+A+VGRNGMGKSTLLK+LIGM+P + G+I         LPSY RV+AGL +VPQGRMIF QL+VEENILTGLET RY   P FIY+FFPVL+EMKDRKGGNLSGGQQQQLAIARALVSRP++LILDEPTEGIQPSIIK+IARSLN LRKELG
Sbjct:   11 YGESHVLHDVSLNVEPGSAVAIVGRNGMGKSTLLKALIGMVPARRGAIE-STAAAHPLPSYRRVKAGLGFVPQGRMIFPQLSVEENILTGLETRRYTAYPGFIYEFFPVLREMKDRKGGNLSGGQQQQLAIARALVSRPKLLILDEPTEGIQPSIIKDIARSLNDLRKELG 180          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: A0A2N2QJX2_9PROT (Urea ABC transporter ATP-binding subunit UrtE n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A2N2QJX2_9PROT)

HSP 1 Score: 245 bits (626), Expect = 6.180e-80
Identity = 117/171 (68.42%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YGESHVIH  +F++ PG ++A++GRNGMGK+TLLKSLIG++P +SG I L GR + GLPS+ RVQ GLA+VPQGRM+F  LTVE+NIL+G E + + ++PD+I++FFPVLKEMK RK GNLSGGQQQ LAIARAL+S P+VLILDEPTEGIQPSIIKE+A++LN LR+E G
Sbjct:   11 YGESHVIHDISFQVQPGESVAIMGRNGMGKTTLLKSLIGLLPTRSGDIQLNGRAINGLPSHRRVQQGLAFVPQGRMVFPFLTVEQNILSGAEHSGHREVPDYIHRFFPVLKEMKHRKAGNLSGGQQQMLAIARALISEPKVLILDEPTEGIQPSIIKELAQTLNVLRQERG 181          
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Match: A0A0D6FMK3_ALCXX (LIV-I protein F n=29 Tax=Alcaligenaceae TaxID=506 RepID=A0A0D6FMK3_ALCXX)

HSP 1 Score: 244 bits (622), Expect = 2.510e-79
Identity = 121/171 (70.76%), Postives = 146/171 (85.38%), Query Frame = 1
Query:    1 YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITLGGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIPDFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEGIQPSIIKEIARSLNALRKELG 513
            YGESHVIH  +FE+APG ++A++GRNGMGK+TLLK+LIGM+   SGSI L   ELAG+ SY RV+ GLA+VPQGRMIF  LTVE+NI+ G E +    +PD++Y+FFPVL+EM+ RKGGNLSGGQQQQLAIARAL+S PRVLILDEPTEGIQPSIIK+IAR+LNALR+E G
Sbjct:   11 YGESHVIHDVSFEVAPGESVAIMGRNGMGKTTLLKALIGMLRSGSGSIRLDDAELAGMESYQRVRNGLAFVPQGRMIFPFLTVEQNIMAGAERSGLKAVPDYLYRFFPVLQEMRRRKGGNLSGGQQQQLAIARALISNPRVLILDEPTEGIQPSIIKDIARALNALREERG 181          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1IXF5_9BURK1.600e-10391.81Urea ABC transporter ATP-binding subunit UrtE n=1 ... [more]
A0A840RTI7_9BURK3.790e-9584.80Urea transport system ATP-binding protein n=1 Tax=... [more]
UPI00190BA9F31.030e-9282.46urea ABC transporter ATP-binding subunit UrtE n=1 ... [more]
UPI0012920CB95.930e-8576.02urea ABC transporter ATP-binding subunit UrtE n=1 ... [more]
UPI0013E1A4913.420e-8476.02urea ABC transporter ATP-binding subunit UrtE n=1 ... [more]
A0A0P0RI80_9BURK9.770e-8474.27Urea ABC transporter, ATPase protein UrtE n=1 Tax=... [more]
A0A6S7BCB0_9BURK5.630e-8375.44High-affinity branched-chain amino acid transport ... [more]
UPI00048480027.730e-8374.85urea ABC transporter ATP-binding subunit UrtE n=1 ... [more]
A0A2N2QJX2_9PROT6.180e-8068.42Urea ABC transporter ATP-binding subunit UrtE n=3 ... [more]
A0A0D6FMK3_ALCXX2.510e-7970.76LIV-I protein F n=29 Tax=Alcaligenaceae TaxID=506 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56467contigP-wetherbeei_contig56467:3..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1216976.AX27061_0387
PFAMsABC_tran
Model size513
Max annot lvl28216|Betaproteobacteria
KEGG koko:K11963
KEGG TC3.A.1.4.4,3.A.1.4.5
KEGG Pathwayko02010,map02010
KEGG ModuleM00323
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.11e-80
EggNOG OGsCOG0410@1|root,COG0410@2|Bacteria,1MU4Z@1224|Proteobacteria,2VJUP@28216|Betaproteobacteria,3T6Y0@506|Alcaligenaceae
DescriptionATPases associated with a variety of cellular activities
Cds size513
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.2395537-CDS-P-wetherbeei_contig56467:2..5151683186839.2395537-CDS-P-wetherbeei_contig56467:2..515Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56467 3..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56467.1.1prot_P-wetherbeei_contig56467.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56467 3..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56467.1.1

>prot_P-wetherbeei_contig56467.1.1 ID=prot_P-wetherbeei_contig56467.1.1|Name=mRNA_P-wetherbeei_contig56467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
YGESHVIHKAAFELAPGAAIAVVGRNGMGKSTLLKSLIGMIPVKSGSITL
GGRELAGLPSYARVQAGLAYVPQGRMIFSQLTVEENILTGLETARYADIP
DFIYKFFPVLKEMKDRKGGNLSGGQQQQLAIARALVSRPRVLILDEPTEG
IQPSIIKEIARSLNALRKELG
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mRNA from alignment at P-wetherbeei_contig56467:3..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56467.1.1 ID=mRNA_P-wetherbeei_contig56467.1.1|Name=mRNA_P-wetherbeei_contig56467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56467:3..515- (Phaeothamnion wetherbeei SAG_119_79)
TACGGTGAAAGCCATGTCATCCATAAGGCGGCTTTTGAACTTGCGCCGGG TGCTGCCATCGCCGTCGTCGGCCGAAACGGCATGGGCAAAAGCACCTTGC TGAAATCGCTTATCGGAATGATTCCAGTAAAGAGCGGTTCGATCACGCTG GGCGGGCGCGAGTTGGCGGGCCTTCCAAGTTATGCGCGCGTTCAGGCGGG CTTGGCTTATGTGCCACAGGGCCGGATGATTTTTTCGCAGCTAACGGTTG AAGAAAATATTCTGACGGGCCTGGAGACCGCGCGCTATGCCGATATTCCG GACTTCATTTATAAATTCTTTCCGGTTCTGAAGGAGATGAAGGACCGTAA GGGCGGCAACCTTTCCGGCGGGCAGCAACAGCAGTTGGCAATCGCGCGCG CGCTGGTGTCCAGGCCCCGGGTATTGATTCTTGACGAGCCTACCGAAGGC ATTCAGCCCTCCATCATCAAGGAAATAGCCCGTTCACTGAACGCGCTGCG CAAGGAGCTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56467:3..515-

>mRNA_P-wetherbeei_contig56467.1.1 ID=mRNA_P-wetherbeei_contig56467.1.1|Name=mRNA_P-wetherbeei_contig56467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig56467:3..515- (Phaeothamnion wetherbeei SAG_119_79)
TACGGTGAAAGCCATGTCATCCATAAGGCGGCTTTTGAACTTGCGCCGGG
TGCTGCCATCGCCGTCGTCGGCCGAAACGGCATGGGCAAAAGCACCTTGC
TGAAATCGCTTATCGGAATGATTCCAGTAAAGAGCGGTTCGATCACGCTG
GGCGGGCGCGAGTTGGCGGGCCTTCCAAGTTATGCGCGCGTTCAGGCGGG
CTTGGCTTATGTGCCACAGGGCCGGATGATTTTTTCGCAGCTAACGGTTG
AAGAAAATATTCTGACGGGCCTGGAGACCGCGCGCTATGCCGATATTCCG
GACTTCATTTATAAATTCTTTCCGGTTCTGAAGGAGATGAAGGACCGTAA
GGGCGGCAACCTTTCCGGCGGGCAGCAACAGCAGTTGGCAATCGCGCGCG
CGCTGGTGTCCAGGCCCCGGGTATTGATTCTTGACGAGCCTACCGAAGGC
ATTCAGCCCTCCATCATCAAGGAAATAGCCCGTTCACTGAACGCGCTGCG
CAAGGAGCTGGGC
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