mRNA_P-wetherbeei_contig56454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56454.1.1
Unique NamemRNA_P-wetherbeei_contig56454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: K8PU47_9BRAD (ABC transporter domain-containing protein n=17 Tax=Bradyrhizobiaceae TaxID=41294 RepID=K8PU47_9BRAD)

HSP 1 Score: 238 bits (608), Expect = 7.580e-78
Identity = 122/128 (95.31%), Postives = 125/128 (97.66%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            LLDV+NLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLK+IAGMEKPKSGSV+F GERIDTIP HLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRD PLEFVFKLFPRLEERL
Sbjct:    2 LLDVANLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKSIAGMEKPKSGSVNFVGERIDTIPAHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDSPLEFVFKLFPRLEERL 129          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: A0A1W9IIK3_9PROT (ABC transporter ATP-binding protein n=1 Tax=Proteobacteria bacterium SG_bin9 TaxID=1827385 RepID=A0A1W9IIK3_9PROT)

HSP 1 Score: 220 bits (561), Expect = 1.030e-70
Identity = 110/128 (85.94%), Postives = 120/128 (93.75%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            +L+VSNLTTAYRGLIAISDISINV  GEIVTVAGANGAGKSTLLK+I+GMEKPKSGSV+F GERIDTIP HL+T+RGLA+VPENKRLFPRLSVADNLRLGSYLHRG  DR+ PLE VFKLFPRL+ERL
Sbjct:    1 MLEVSNLTTAYRGLIAISDISINVAEGEIVTVAGANGAGKSTLLKSISGMEKPKSGSVNFSGERIDTIPAHLVTSRGLAYVPENKRLFPRLSVADNLRLGSYLHRGKADREAPLELVFKLFPRLQERL 128          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: A0A0Q6YS25_9BRAD (ABC transporter ATP-binding protein n=1 Tax=Afipia sp. Root123D2 TaxID=1736436 RepID=A0A0Q6YS25_9BRAD)

HSP 1 Score: 213 bits (542), Expect = 7.900e-68
Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            +L+VSN+TTAYRGL+AISD+SI V   EIVTVAGANGAGKSTLLK+IAGME+ +SG V FGGERID IP HLITARGLA+VPENKRLFPRLSVADNLRLGSYLHR SPDRD PLE VFKLFPRL+ERL
Sbjct:    1 MLEVSNITTAYRGLVAISDVSIGVGENEIVTVAGANGAGKSTLLKSIAGMERARSGEVRFGGERIDNIPAHLITARGLAYVPENKRLFPRLSVADNLRLGSYLHRKSPDRDAPLEIVFKLFPRLQERL 128          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: UPI001BA9E9E2 (ABC transporter ATP-binding protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA9E9E2)

HSP 1 Score: 208 bits (529), Expect = 7.450e-66
Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            +L+VSN+TTAYRGLIAIS+ISI VD+ EIVTVAGANGAGKSTLLK+IAGMEK +SG+V+F GERIDTIP H ITARGLA+VPENKRLFPRLSVADNLRLGSYL R + DRD PL+FVFKLFPRL+ERL
Sbjct:    1 MLEVSNITTAYRGLIAISEISIAVDANEIVTVAGANGAGKSTLLKSIAGMEKARSGTVNFAGERIDTIPAHQITARGLAYVPENKRLFPRLSVADNLRLGSYLFRNTADRDAPLDFVFKLFPRLKERL 128          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: A0A7Y7LQ77_9BURK (Branched-chain amino acid transport system ATP-binding protein n=4 Tax=Burkholderiales TaxID=80840 RepID=A0A7Y7LQ77_9BURK)

HSP 1 Score: 196 bits (499), Expect = 2.750e-61
Identity = 99/128 (77.34%), Postives = 111/128 (86.72%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            LLDV  LT+AY GL+AISDISI+V  GEIV VAGANGAGKSTLL+++ GM KP+SG VSF GERI+T+PGH I ARGLAFVPE+KRLFPRLSVADNLRLGSYLHR   DR+ PLE VFKLFPRL+ERL
Sbjct:    2 LLDVRGLTSAYAGLVAISDISISVKEGEIVVVAGANGAGKSTLLQSLIGMVKPRSGEVSFAGERIETLPGHQIAARGLAFVPESKRLFPRLSVADNLRLGSYLHRKKADREAPLEMVFKLFPRLKERL 129          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: B8IJ94_METNO (ABC transporter related n=4 Tax=Methylobacterium TaxID=407 RepID=B8IJ94_METNO)

HSP 1 Score: 195 bits (496), Expect = 7.850e-61
Identity = 96/128 (75.00%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            LL+V +L+TAY+GL+AI D+S+ V  GEIV VAGANGAGKSTLLK+IAGME+P++G V F G RID +PGHLITARG+A+VPENKRLFPRLSVADNLRLG YL+RG PD DGPLE VF LFPRL+ERL
Sbjct:    2 LLEVRSLSTAYQGLLAIQDVSLEVAKGEIVVVAGANGAGKSTLLKSIAGMERPRAGEVVFDGARIDGLPGHLITARGIAYVPENKRLFPRLSVADNLRLGRYLYRGQPDADGPLERVFSLFPRLKERL 129          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: UPI00148302E5 (ABC transporter ATP-binding protein n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI00148302E5)

HSP 1 Score: 195 bits (495), Expect = 1.080e-60
Identity = 96/128 (75.00%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            +LDV  LTT+YRGLIAISDIS+ V  GEIV VAGANGAGKSTLLK+I+GME+P+ G+V+F G+RI+T+P HLITARGLA+VPEN+RLFPRLSV DNLRLGSY+HR  PDRD PLE  F LFPRL+ERL
Sbjct:    1 MLDVEKLTTSYRGLIAISDISLAVAEGEIVAVAGANGAGKSTLLKSISGMERPRDGAVTFAGDRIETLPAHLITARGLAYVPENRRLFPRLSVYDNLRLGSYMHRKLPDRDAPLERCFALFPRLKERL 128          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: A0A147GNR9_9BURK (ABC transporter ATP-binding protein (Fragment) n=2 Tax=Pseudacidovorax intermedius TaxID=433924 RepID=A0A147GNR9_9BURK)

HSP 1 Score: 191 bits (484), Expect = 4.290e-60
Identity = 97/128 (75.78%), Postives = 109/128 (85.16%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            +L+VSNLTTAY GLIAISDIS+NV  GEIV VAGANGAGKSTLLK+IAGME+P+ GSV F G  ID +P H I  RGLA+VPEN+RLFPRLSVADNLRLGSYL+R   DR+GPLE VF LFPRL+ERL
Sbjct:    1 MLEVSNLTTAYNGLIAISDISMNVAEGEIVVVAGANGAGKSTLLKSIAGMERPQGGSVRFDGAPIDAVPAHQIPQRGLAYVPENRRLFPRLSVADNLRLGSYLYRKQADREGPLEQVFTLFPRLKERL 128          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: A7IFF3_XANP2 (ABC transporter related n=4 Tax=Xanthobacter TaxID=279 RepID=A7IFF3_XANP2)

HSP 1 Score: 192 bits (489), Expect = 9.050e-60
Identity = 97/128 (75.78%), Postives = 113/128 (88.28%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            LL+V +LTTAY GLIAISDIS++V +GEIV VAGANGAGKSTLLK+IAGME+PKSG+V+F G+RID + GHLITARG+A+VPE KRLFPRL+VADNLRLGSYLH    DR+ PLE VF LFPRL+ERL
Sbjct:    2 LLEVKSLTTAYDGLIAISDISVDVKAGEIVVVAGANGAGKSTLLKSIAGMERPKSGTVTFAGDRIDGLAGHLITARGIAYVPEAKRLFPRLTVADNLRLGSYLHADKADREAPLEQVFTLFPRLKERL 129          
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Match: A0A7L5Y318_9HYPH (ABC transporter ATP-binding protein n=1 Tax=Rhodoblastus sp. TaxID=1962975 RepID=A0A7L5Y318_9HYPH)

HSP 1 Score: 192 bits (487), Expect = 1.770e-59
Identity = 92/128 (71.88%), Postives = 111/128 (86.72%), Query Frame = 1
Query:    4 LLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAGMEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRLGSYLHRGSPDRDGPLEFVFKLFPRLEERL 387
            +LD+  L+TAY GL+A+SD+S+ ++ GEIV VAGANGAGKSTLLK+IAG+EKP++G + F GERID IP HL+TARGLA+VPENKRLFPRLSV DNLRLGS+LHRG PDR+ PL+ VF LFPRL ERL
Sbjct:    1 MLDIRELSTAYGGLLALSDVSLALEEGEIVVVAGANGAGKSTLLKSIAGLEKPRAGQIVFAGERIDRIPAHLVTARGLAYVPENKRLFPRLSVRDNLRLGSWLHRGKPDREEPLKTVFALFPRLAERL 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8PU47_9BRAD7.580e-7895.31ABC transporter domain-containing protein n=17 Tax... [more]
A0A1W9IIK3_9PROT1.030e-7085.94ABC transporter ATP-binding protein n=1 Tax=Proteo... [more]
A0A0Q6YS25_9BRAD7.900e-6882.81ABC transporter ATP-binding protein n=1 Tax=Afipia... [more]
UPI001BA9E9E27.450e-6682.03ABC transporter ATP-binding protein n=1 Tax=unclas... [more]
A0A7Y7LQ77_9BURK2.750e-6177.34Branched-chain amino acid transport system ATP-bin... [more]
B8IJ94_METNO7.850e-6175.00ABC transporter related n=4 Tax=Methylobacterium T... [more]
UPI00148302E51.080e-6075.00ABC transporter ATP-binding protein n=1 Tax=Rhodom... [more]
A0A147GNR9_9BURK4.290e-6075.78ABC transporter ATP-binding protein (Fragment) n=2... [more]
A7IFF3_XANP29.050e-6075.78ABC transporter related n=4 Tax=Xanthobacter TaxID... [more]
A0A7L5Y318_9HYPH1.770e-5971.88ABC transporter ATP-binding protein n=1 Tax=Rhodob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56454contigP-wetherbeei_contig56454:1..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog883078.HMPREF9695_00970
Preferred nameMA20_16460
PFAMsABC_tran,BCA_ABC_TP_C
Model size387
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01996
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-78
EggNOG OGsCOG0410@1|root,COG0410@2|Bacteria,1MUGR@1224|Proteobacteria,2VEZK@28211|Alphaproteobacteria,3JRXP@41294|Bradyrhizobiaceae
DescriptionBranched-chain amino acid ATP-binding cassette transporter
Cds size387
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186839.1167998-CDS-P-wetherbeei_contig56454:0..3871683186839.1167998-CDS-P-wetherbeei_contig56454:0..387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56454 1..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56454.1.1prot_P-wetherbeei_contig56454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56454 1..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56454.1.1

>prot_P-wetherbeei_contig56454.1.1 ID=prot_P-wetherbeei_contig56454.1.1|Name=mRNA_P-wetherbeei_contig56454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
VLLDVSNLTTAYRGLIAISDISINVDSGEIVTVAGANGAGKSTLLKTIAG
MEKPKSGSVSFGGERIDTIPGHLITARGLAFVPENKRLFPRLSVADNLRL
GSYLHRGSPDRDGPLEFVFKLFPRLEERL
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mRNA from alignment at P-wetherbeei_contig56454:1..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56454.1.1 ID=mRNA_P-wetherbeei_contig56454.1.1|Name=mRNA_P-wetherbeei_contig56454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig56454:1..387- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTGCTTGACGTCTCAAATCTCACGACGGCGTATCGCGGGCTGATCGC AATCTCGGATATTTCGATCAACGTCGATTCCGGCGAGATCGTCACCGTCG CCGGCGCAAACGGTGCGGGCAAATCGACGCTTCTGAAAACAATCGCCGGC ATGGAGAAGCCGAAATCCGGCTCGGTCAGTTTCGGCGGCGAGCGGATCGA CACCATTCCGGGGCATCTCATCACCGCGCGCGGGCTTGCCTTCGTGCCAG AAAACAAGCGGCTGTTTCCGCGTCTCAGCGTCGCCGACAACCTGCGGCTC GGAAGCTACCTGCATCGCGGCAGTCCCGACCGCGACGGGCCGCTTGAATT CGTGTTCAAGCTGTTTCCGCGCCTTGAAGAGCGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56454:1..387-

>mRNA_P-wetherbeei_contig56454.1.1 ID=mRNA_P-wetherbeei_contig56454.1.1|Name=mRNA_P-wetherbeei_contig56454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig56454:1..387- (Phaeothamnion wetherbeei SAG_119_79)
GTGTTGCTTGACGTCTCAAATCTCACGACGGCGTATCGCGGGCTGATCGC
AATCTCGGATATTTCGATCAACGTCGATTCCGGCGAGATCGTCACCGTCG
CCGGCGCAAACGGTGCGGGCAAATCGACGCTTCTGAAAACAATCGCCGGC
ATGGAGAAGCCGAAATCCGGCTCGGTCAGTTTCGGCGGCGAGCGGATCGA
CACCATTCCGGGGCATCTCATCACCGCGCGCGGGCTTGCCTTCGTGCCAG
AAAACAAGCGGCTGTTTCCGCGTCTCAGCGTCGCCGACAACCTGCGGCTC
GGAAGCTACCTGCATCGCGGCAGTCCCGACCGCGACGGGCCGCTTGAATT
CGTGTTCAAGCTGTTTCCGCGCCTTGAAGAGCGGCTG
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