mRNA_P-wetherbeei_contig5639.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5639.2.1
Unique NamemRNA_P-wetherbeei_contig5639.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A7S4DCB8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCB8_HETAK)

HSP 1 Score: 104 bits (260), Expect = 1.700e-23
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:   10 AGVDMRLLRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILVSMLP 237
            A ++ R LRP RLPL  KRARRCRRD+ +G+SGIL+KP VNP+EGD+SQ S  G+W+KKD+SA+H VP+I +  LP
Sbjct:    4 AALEARRLRPHRLPLLGKRARRCRRDVEDGKSGILIKPSVNPMEGDSSQPSNRGKWWKKDASAIHFVPQITIVSLP 79
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A7S2ECG0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ECG0_TRICV)

HSP 1 Score: 99.8 bits (247), Expect = 1.540e-20
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   16 VDMRLLRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            VD   L P  +PLRA+++RRCR +LA GR+GILVKPKVNPLEGD+S  S HGQW+KKDSSA+HSVP++ V
Sbjct:   84 VDEADLLPLPIPLRARKSRRCRAELAAGRTGILVKPKVNPLEGDSSLRSGHGQWWKKDSSAIHSVPKVQV 153
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A7S4MWN0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWN0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.640e-20
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   31 LRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            L P  +PLRA+++RRCRR+LAEGR+GILVKPKVNPLEGD+S  S HGQW+KKDSSAVHSVPR+ V
Sbjct:  290 LLPLPVPLRARKSRRCRRELAEGRTGILVKPKVNPLEGDSSLRSGHGQWWKKDSSAVHSVPRVSV 354
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A1Z5JDS5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDS5_FISSO)

HSP 1 Score: 96.7 bits (239), Expect = 4.870e-18
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   13 GVDMRLLRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            GV    L P  +PLRA+R+RRCR +LA GR GILVKPKVNPLEGD+S  + HGQW++KDSSA+H +PR+ V
Sbjct:  222 GVHRNDLLPLPVPLRARRSRRCRAELASGRPGILVKPKVNPLEGDSSLRTGHGQWWRKDSSAIHVIPRVRV 292
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A7S0BYA9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYA9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.950e-17
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   37 PPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            P  +PL+A+++RRCR +LA GR GILVKPKVNP+EGD+S  S HGQW+KKDSSA+H VPR+ +
Sbjct:  245 PLSIPLQARKSRRCRHELASGRPGILVKPKVNPVEGDSSLRSGHGQWWKKDSSAIHVVPRVKL 307
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A7S2EC45_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EC45_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.900e-17
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   28 LLRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            LL P  + LR +++RRCR +LA GR+GILVKPK+NPLEGD+S  S HGQW+KKDSSA+H VPR+ V
Sbjct:  121 LLLPVPIQLRPRKSRRCRAELAAGRTGILVKPKLNPLEGDSSLRSGHGQWYKKDSSAIHVVPRVQV 186
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A6V2CU51_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CU51_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.210e-17
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   28 LLRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            LL P  + LR +++RRCR +LA GR+GILVKPK+NPLEGD+S  S HGQW+KKDSSA+H VPR+ V
Sbjct:  298 LLLPVPIQLRPRKSRRCRAELAAGRTGILVKPKLNPLEGDSSLRSGHGQWYKKDSSAIHVVPRVQV 363
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A7S0G9X7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G9X7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.290e-17
Identity = 41/63 (65.08%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   37 PPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            P  +PL+A+++RRCR +LA GR GILVKPKVNP+EGD+S  S HGQW+KKDSSA+H VPR+ +
Sbjct:  245 PLSIPLQARKSRRCRHELASGRPGILVKPKVNPVEGDSSLRSGHGQWWKKDSSAIHVVPRVKL 307
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A7S2UH53_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH53_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.770e-17
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:   31 LRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILV 225
            L P  + LRAK++RRCR +LA GR GILVKPK NPLEGD+S  S HGQW+KKDSSA+H+VPR+ V
Sbjct:  262 LLPIPIALRAKKSRRCRAELAAGRPGILVKPKPNPLEGDSSLRSGHGQWWKKDSSAIHAVPRVRV 326
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BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Match: A0A448ZLT6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLT6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-16
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   31 LRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHGQWFKKDSSAVHSVPRILVS 228
            L P ++PLR +++RRCR +LAE R GILVKPK+NPLEGD+S  + HGQW+KKDSSAV  +PR+ VS
Sbjct:   57 LLPLQIPLRPRKSRRCRAELAENRPGILVKPKLNPLEGDSSLRTGHGQWWKKDSSAVEVLPRVRVS 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5639.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DCB8_HETAK1.700e-2361.84Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2ECG0_TRICV1.540e-2067.14Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4MWN0_9STRA2.640e-2075.38Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5JDS5_FISSO4.870e-1863.38Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S0BYA9_9STRA1.950e-1765.08Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2EC45_9STRA2.900e-1765.15Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6V2CU51_9STRA7.210e-1765.15Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0G9X7_9STRA8.290e-1765.08Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2UH53_9STRA8.770e-1767.69Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448ZLT6_9STRA1.050e-1663.64Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5639contigP-wetherbeei_contig5639:1212..2490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SN59
Model size1279
Max annot lvl2836|Bacillariophyta
KEGG koko:K10426
KEGG Pathwayko04962,ko05016,map04962,map05016
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.77e-15
EggNOG OGs2EMJ0@1|root,2SR6Y@2759|Eukaryota,2XDH6@2836|Bacillariophyta
Cds size1245
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.4139981-UTR-P-wetherbeei_contig5639:1211..12241683186838.4139981-UTR-P-wetherbeei_contig5639:1211..1224Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5639 1212..1224 -
1683186838.435081-UTR-P-wetherbeei_contig5639:2469..24901683186838.435081-UTR-P-wetherbeei_contig5639:2469..2490Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5639 2470..2490 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.4251819-CDS-P-wetherbeei_contig5639:1224..24691683186838.4251819-CDS-P-wetherbeei_contig5639:1224..2469Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5639 1225..2469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5639.2.1prot_P-wetherbeei_contig5639.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5639 1225..2469 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5639.2.1

>prot_P-wetherbeei_contig5639.2.1 ID=prot_P-wetherbeei_contig5639.2.1|Name=mRNA_P-wetherbeei_contig5639.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=415bp
MRLLRPPRLPLRAKRARRCRRDLAEGRSGILVKPKVNPLEGDTSQASKHG
QWFKKDSSAVHSVPRILVSMLPPPDWLRSDASARGGDREERSGGGGDSGK
NSGGGEDCGGGGKESSSATILLRISNPLTAPIVVRIVGNGGITTAGAAAR
ERGSADSSNNSIAAASAAGAMQADATATAAGTAAAAAAAAGKGSCFGDRP
DATGIRLWLALPLGSDGVRVSLEGKEDEYLSQHDDNAVKRLPDAFRAAAA
AGCAGRDDLLAAAVAAAATTTAAAAAAAAAAAAGASRGAEPAARRVVVGT
AAGTATAGKASAPGAATAAVPGEISGEAAAAWAAAAPAGVFYQIADTAWV
RLPVELPAEAATGQGLSGKRAALELILLATEEKGGVGGSGMGADDAGATP
AATTFTLAVIFPFT*
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mRNA from alignment at P-wetherbeei_contig5639:1212..2490-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5639.2.1 ID=mRNA_P-wetherbeei_contig5639.2.1|Name=mRNA_P-wetherbeei_contig5639.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1279bp|location=Sequence derived from alignment at P-wetherbeei_contig5639:1212..2490- (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCGCCGCCGGCGTGGACATGCGGCTTCTGCGGCCGCCGCGGCTGCC
GCTGCGCGCCAAGCGGGCGCGGCGCTGCCGGCGCGACCTGGCAGAAGGGC
GGAGCGGCATCCTGGTCAAGCCGAAAGTGAACCCGCTGGAGGGGGACACC
AGCCAAGCCTCAAAGCACGGCCAATGGTTCAAGAAGGACAGCAGCGCCGT
GCATTCCGTGCCCCGCATCTTGGTGTCCATGCTTCCGCCGCCGGACTGGC
TGCGGAGTGACGCCAGCGCCCGCGGCGGCGACAGAGAAGAACGCAGCGGC
GGCGGCGGCGACAGCGGCAAGAACAGCGGCGGCGGTGAGGACTGCGGCGG
CGGTGGGAAAGAAAGCAGTAGCGCGACTATTCTGCTGCGGATCAGCAACC
CCCTGACGGCGCCAATCGTCGTCCGCATTGTCGGGAACGGCGGAATCACC
ACTGCCGGTGCTGCCGCAAGAGAAAGAGGCTCCGCCGATAGTAGTAATAA
TAGCATAGCGGCGGCGTCAGCAGCGGGCGCTATGCAAGCAGACGCGACTG
CTACCGCCGCTGGAACGGCGGCGGCGGCGGCGGCGGCGGCGGGAAAGGGA
AGCTGCTTCGGCGACAGGCCCGACGCTACCGGCATCCGGCTATGGCTGGC
GCTGCCGCTTGGATCGGACGGCGTTCGAGTCTCGCTGGAGGGTAAAGAGG
ACGAGTACCTGAGCCAGCATGACGACAACGCCGTCAAGCGCCTCCCAGAC
GCTTTTCGGGCGGCGGCTGCGGCCGGCTGCGCCGGGAGAGACGACTTGCT
GGCGGCGGCGGTGGCGGCAGCAGCGACAACGACAGCAGCAGCAGCGGCGG
CGGCGGCGGCGGCGGCGGCAGGAGCGTCGAGGGGGGCGGAGCCAGCGGCT
AGAAGAGTGGTGGTTGGGACGGCGGCTGGGACGGCGACAGCTGGGAAGGC
TTCGGCCCCTGGAGCGGCAACGGCGGCGGTGCCTGGTGAGATCTCGGGAG
AGGCAGCGGCGGCGTGGGCGGCGGCCGCGCCTGCCGGCGTCTTTTACCAG
ATCGCAGACACGGCATGGGTGAGGCTACCGGTGGAGCTTCCGGCGGAGGC
AGCGACGGGGCAGGGACTTTCGGGGAAGCGCGCCGCGTTGGAGCTGATTC
TTCTTGCAACGGAGGAAAAGGGGGGCGTTGGCGGCAGCGGTATGGGTGCC
GACGATGCCGGGGCTACGCCAGCCGCAACGACCTTCACTCTTGCGGTAAT
ATTTCCTTTCACTTGAACCTGTCGCAAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5639:1212..2490-

>mRNA_P-wetherbeei_contig5639.2.1 ID=mRNA_P-wetherbeei_contig5639.2.1|Name=mRNA_P-wetherbeei_contig5639.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1245bp|location=Sequence derived from alignment at P-wetherbeei_contig5639:1212..2490- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCTTCTGCGGCCGCCGCGGCTGCCGCTGCGCGCCAAGCGGGCGCG
GCGCTGCCGGCGCGACCTGGCAGAAGGGCGGAGCGGCATCCTGGTCAAGC
CGAAAGTGAACCCGCTGGAGGGGGACACCAGCCAAGCCTCAAAGCACGGC
CAATGGTTCAAGAAGGACAGCAGCGCCGTGCATTCCGTGCCCCGCATCTT
GGTGTCCATGCTTCCGCCGCCGGACTGGCTGCGGAGTGACGCCAGCGCCC
GCGGCGGCGACAGAGAAGAACGCAGCGGCGGCGGCGGCGACAGCGGCAAG
AACAGCGGCGGCGGTGAGGACTGCGGCGGCGGTGGGAAAGAAAGCAGTAG
CGCGACTATTCTGCTGCGGATCAGCAACCCCCTGACGGCGCCAATCGTCG
TCCGCATTGTCGGGAACGGCGGAATCACCACTGCCGGTGCTGCCGCAAGA
GAAAGAGGCTCCGCCGATAGTAGTAATAATAGCATAGCGGCGGCGTCAGC
AGCGGGCGCTATGCAAGCAGACGCGACTGCTACCGCCGCTGGAACGGCGG
CGGCGGCGGCGGCGGCGGCGGGAAAGGGAAGCTGCTTCGGCGACAGGCCC
GACGCTACCGGCATCCGGCTATGGCTGGCGCTGCCGCTTGGATCGGACGG
CGTTCGAGTCTCGCTGGAGGGTAAAGAGGACGAGTACCTGAGCCAGCATG
ACGACAACGCCGTCAAGCGCCTCCCAGACGCTTTTCGGGCGGCGGCTGCG
GCCGGCTGCGCCGGGAGAGACGACTTGCTGGCGGCGGCGGTGGCGGCAGC
AGCGACAACGACAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAG
GAGCGTCGAGGGGGGCGGAGCCAGCGGCTAGAAGAGTGGTGGTTGGGACG
GCGGCTGGGACGGCGACAGCTGGGAAGGCTTCGGCCCCTGGAGCGGCAAC
GGCGGCGGTGCCTGGTGAGATCTCGGGAGAGGCAGCGGCGGCGTGGGCGG
CGGCCGCGCCTGCCGGCGTCTTTTACCAGATCGCAGACACGGCATGGGTG
AGGCTACCGGTGGAGCTTCCGGCGGAGGCAGCGACGGGGCAGGGACTTTC
GGGGAAGCGCGCCGCGTTGGAGCTGATTCTTCTTGCAACGGAGGAAAAGG
GGGGCGTTGGCGGCAGCGGTATGGGTGCCGACGATGCCGGGGCTACGCCA
GCCGCAACGACCTTCACTCTTGCGGTAATATTTCCTTTCACTTGA
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