mRNA_P-wetherbeei_contig56370.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56370.1.1
Unique NamemRNA_P-wetherbeei_contig56370.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI001C3E7A0B (TetR/AcrR family transcriptional regulator n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E7A0B)

HSP 1 Score: 134 bits (336), Expect = 3.630e-37
Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSPCHFEIPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAAL 321
            ARDRG+ E   S++ GS  LR AR RV AP   LL RAQ AG VR DL P+DV FLITAAGH  PC  +IP LWRRYLGVILDGMRP  ASPL+  APS  E EAAL
Sbjct:   99 ARDRGMFETASSDVVGSPELRGARDRVTAPFAALLERAQAAGVVRDDLVPVDVLFLITAAGHAQPCQLQIPDLWRRYLGVILDGMRPAAASPLSGPAPSLGEIEAAL 205          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI001C3D12B6 (TetR/AcrR family transcriptional regulator n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D12B6)

HSP 1 Score: 121 bits (304), Expect = 2.480e-32
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSPCHFEIPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAAL 321
            DRG+ +A  S + GS RLREAR R+ AP   LLRRAQ AG VR DLEP DV FL+TAA   +P    +PGLWRRY+ VILDGMRP  ASPL  AAPS  E EAAL
Sbjct:  100 DRGMKDAATSRMIGSPRLREARRRITAPFGDLLRRAQAAGVVRADLEPEDVIFLVTAATSAAPRPLRMPGLWRRYMAVILDGMRPAGASPLPVAAPSPGELEAAL 204          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI001FEE4EB4 (TetR/AcrR family transcriptional regulator n=1 Tax=Patulibacter sp. SYSU D01012 TaxID=2817381 RepID=UPI001FEE4EB4)

HSP 1 Score: 83.6 bits (205), Expect = 1.210e-17
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSP-CHFEI----PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAALA 324
            DR  +EAVG  +F +   RE  +R+   +  LLRRAQ+AG+VR DL P D+ FL+ A G  +  C  ++    P LWRRYL V+LDG+RP  A PL    P+ ++  AA A
Sbjct:   91 DRTFLEAVGPALFSTESFRERNVRMLERLGQLLRRAQDAGQVRPDLTPEDLPFLVAAVGGATEKCPMQVDGCAPDLWRRYLCVVLDGLRPEGAHPLPGVPPTVEQLMAAKA 201          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI0003B38A0B (TetR/AcrR family transcriptional regulator n=1 Tax=Patulibacter americanus TaxID=588672 RepID=UPI0003B38A0B)

HSP 1 Score: 83.2 bits (204), Expect = 2.690e-17
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSP-CHFEI----PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEA 315
            DR  +++VG ++F   R RE   R+   +  LL R Q AG+VR DL P D+ F++ A G  +  C   +    P LWRRYLGV+LDGMRP  A PL    P+ D+  A
Sbjct:  108 DRTFLQSVGPDLFSQPRFRERNERIMGQLGELLERGQRAGQVRDDLSPEDLPFILAAVGGATEQCPVAMTGCSPDLWRRYLGVLLDGMRPAAAHPLPTGPPTLDQLMA 215          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A7K0PKZ9_9ACTN (TetR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K0PKZ9_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 4.050e-17
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHFE---IPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEA 315
            ARDRG +E+VG E+F    L+       A +  +L RAQ  G VR DL   DV FLI+A G  +  C       P LWRRYLG++LDGMRP  ASPL   AP+F++  A
Sbjct:  115 ARDRGFLESVGPELFQEPTLQRRNAERMASLSVVLERAQADGLVRDDLRAEDVPFLISAVGGATGKCSRGGAIDPELWRRYLGIVLDGMRPAGASPLPVDAPTFEQLTA 223          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A810L4I5_9ACTN (TetR family transcriptional regulator n=1 Tax=Actinocatenispora sera TaxID=390989 RepID=A0A810L4I5_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 2.830e-16
Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 1
Query:    1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHFEIPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAALAG 327
            A DR   EA  S +    R+R A  R+A   E L RRA++AG +R D+   DV  L  AA   + P    +PGLWRRYL +I DG+RP  A  L  AAP+  +F AA AG
Sbjct:   95 ANDRSFCEAATSIVRTDTRVRAASARLAETAEELTRRARDAGAIRTDVTGHDVVLLFNAAAQAAAPLGAAVPGLWRRYLYLIFDGLRPESARTLPVAAPTAADFTAAAAG 204          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: H0E431_9ACTN (Transcriptional regulator TetR family n=1 Tax=Patulibacter medicamentivorans TaxID=1097667 RepID=H0E431_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 1.120e-15
Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHF--EI-PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEA 315
            ARDR  +++VG E+F    L+         +  L+ RAQ AG +R DL   DV FL++A G  +  C    EI P LWRRYLG++LDG+RP+ A+PL  AAP+F++  A
Sbjct:  111 ARDRSFLDSVGPELFREPSLQRRNQERMEHIRQLVARAQAAGLLRDDLRAEDVPFLLSAVGGATGQCTSGGEISPELWRRYLGIVLDGLRPVAATPLPVAAPTFEQLTA 219          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A380P5Z2_STRGR (TetR family transcriptional regulator n=8 Tax=Streptomyces TaxID=1883 RepID=A0A380P5Z2_STRGR)

HSP 1 Score: 75.1 bits (183), Expect = 3.210e-14
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    7 DRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVS-PCHFEIPGLWRRYLGVILDGMRPLEASP-LTPAAPSFDEFE 312
            DRG  E++         +RE   R+   +EGLL+RAQ  G VR D+ P+DV  L+      + P    +P LWRRYLG++ DG+ P    P L P APS +++E
Sbjct:  104 DRGFFESLSLPPRSHPEVREVEKRLIDAVEGLLKRAQRQGVVRADITPVDVLLLLGGVRQAAAPLSTAVPDLWRRYLGLVFDGLAPTRDEPSLAPPAPSREQYE 207          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: A0A1A3EIR4_9MYCO (Transcriptional regulator n=3 Tax=unclassified Mycobacterium TaxID=2642494 RepID=A0A1A3EIR4_9MYCO)

HSP 1 Score: 74.3 bits (181), Expect = 5.820e-14
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 ARDRGLMEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSPC--HFEIPGLWRRYLGVILDGMRPLEAS-PLTPAAPSFDEFEAAL 321
            A DRGL EAV S+ +G  R+  +RLR+   +  L+ RA++ G +R D+ P D+ FL   AG VS    H E P LWRRY+ + LDGMRP     P   AA   ++ +AA+
Sbjct:  107 ATDRGLREAVFSKAYGGDRVEASRLRLTPVISKLVERAKDDGYLRPDISPTDMPFLALLAGTVSEYAGHVE-PQLWRRYVAIFLDGMRPRRGQRPFAIAALDDEQLDAAM 215          
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Match: UPI000688346D (TetR/AcrR family transcriptional regulator n=1 Tax=Patulibacter minatonensis TaxID=298163 RepID=UPI000688346D)

HSP 1 Score: 72.4 bits (176), Expect = 3.330e-13
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    1 ARDRGLMEAVGSEIFGS---ARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFLITAAGHVSP-CHFEI-----PGLWRRYLGVILDGMRPLEASPLTPAAPSFDEF 309
            ARDR  +++VG E++G     R  EA +   A    L+ RAQ AG VR DL P DV FL++A G  +  C   +     P LWRRYLG+ILDG+RP  A  L  +AP+ ++ 
Sbjct:  106 ARDRTFLQSVGPELYGDEHFVRRNEAMMNAIA---ALIARAQAAGVVRADLAPEDVPFLVSAVGGTTEHCGGGVIGGVSPELWRRYLGLILDGLRPEGAHELAESAPTREQL 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56370.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3E7A0B3.630e-3765.42TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI001C3D12B62.480e-3262.86TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI001FEE4EB41.210e-1744.14TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI0003B38A0B2.690e-1742.59TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A7K0PKZ9_9ACTN4.050e-1746.79TetR family transcriptional regulator n=2 Tax=root... [more]
A0A810L4I5_9ACTN2.830e-1644.55TetR family transcriptional regulator n=1 Tax=Acti... [more]
H0E431_9ACTN1.120e-1544.04Transcriptional regulator TetR family n=1 Tax=Patu... [more]
A0A380P5Z2_STRGR3.210e-1439.42TetR family transcriptional regulator n=8 Tax=Stre... [more]
A0A1A3EIR4_9MYCO5.820e-1442.73Transcriptional regulator n=3 Tax=unclassified Myc... [more]
UPI000688346D3.330e-1342.86TetR/AcrR family transcriptional regulator n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56370contigP-wetherbeei_contig56370:2..328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122939.ATUD01000007_gene2103
PFAMsTetR_N
Model size327
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.5e-17
EggNOG OGsCOG1309@1|root,COG1309@2|Bacteria,2GIVD@201174|Actinobacteria,4CT8D@84995|Rubrobacteria
DescriptionBacterial regulatory proteins, tetR family
Cds size309
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.2956936-UTR-P-wetherbeei_contig56370:1..191683186838.2956936-UTR-P-wetherbeei_contig56370:1..19Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56370 2..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186838.3048375-CDS-P-wetherbeei_contig56370:19..3281683186838.3048375-CDS-P-wetherbeei_contig56370:19..328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56370 20..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56370.1.1prot_P-wetherbeei_contig56370.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56370 20..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56370.1.1

>prot_P-wetherbeei_contig56370.1.1 ID=prot_P-wetherbeei_contig56370.1.1|Name=mRNA_P-wetherbeei_contig56370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MEAVGSEIFGSARLREARLRVAAPMEGLLRRAQEAGRVRRDLEPLDVFFL
ITAAGHVSPCHFEIPGLWRRYLGVILDGMRPLEASPLTPAAPSFDEFEAA
LAG
back to top

mRNA from alignment at P-wetherbeei_contig56370:2..328+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56370.1.1 ID=mRNA_P-wetherbeei_contig56370.1.1|Name=mRNA_P-wetherbeei_contig56370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig56370:2..328+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCGCGACCGCGGGCTCATGGAGGCCGTCGGCAGCGAGATCTTCGGCTC CGCACGGCTGCGCGAAGCGCGCCTGCGCGTGGCGGCCCCGATGGAGGGCC TGCTGCGTCGCGCCCAGGAGGCCGGGCGCGTACGCCGCGACCTGGAGCCG CTCGACGTGTTCTTCCTCATCACCGCGGCGGGGCACGTCTCGCCGTGCCA CTTCGAGATCCCCGGGCTCTGGAGGCGCTACCTCGGGGTGATCCTCGACG GCATGCGGCCCCTGGAGGCCAGCCCGCTCACGCCTGCCGCGCCCTCATTC GACGAGTTCGAGGCCGCCCTGGCCGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56370:2..328+

>mRNA_P-wetherbeei_contig56370.1.1 ID=mRNA_P-wetherbeei_contig56370.1.1|Name=mRNA_P-wetherbeei_contig56370.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig56370:2..328+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGCCGTCGGCAGCGAGATCTTCGGCTCCGCACGGCTGCGCGAAGC
GCGCCTGCGCGTGGCGGCCCCGATGGAGGGCCTGCTGCGTCGCGCCCAGG
AGGCCGGGCGCGTACGCCGCGACCTGGAGCCGCTCGACGTGTTCTTCCTC
ATCACCGCGGCGGGGCACGTCTCGCCGTGCCACTTCGAGATCCCCGGGCT
CTGGAGGCGCTACCTCGGGGTGATCCTCGACGGCATGCGGCCCCTGGAGG
CCAGCCCGCTCACGCCTGCCGCGCCCTCATTCGACGAGTTCGAGGCCGCC
CTGGCCGGT
back to top