mRNA_P-wetherbeei_contig56249.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig56249.1.1
Unique Name	mRNA_P-wetherbeei_contig56249.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: UPI00188FDA96 (sugar ABC transporter permease n=1 Tax=Diaphorobacter sp. NR2-3-3-1 TaxID=2784387 RepID=UPI00188FDA96)

HSP 1 Score: 155 bits (391), Expect = 1.570e-44
Identity = 77/112 (68.75%), Postives = 92/112 (82.14%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            MKR+RTGSDR LL AFG  V +TLLLI+VPV DAI LS + AESF+S +TWVG ANY+R+LSD +FWHA RVG +FA   I  QV+LG+ FALLL++QFPGRP+VRGITVLP
Sbjct:    1 MKRVRTGSDRLLLGAFGLAVLLTLLLIMVPVADAIWLSFFKAESFVSAKTWVGAANYSRVLSDASFWHAFRVGTVFALLAIVGQVILGIGFALLLNEQFPGRPIVRGITVLP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: UPI001F36E7C6 (sugar ABC transporter permease n=1 Tax=Achromobacter aestuarii TaxID=2511204 RepID=UPI001F36E7C6)

HSP 1 Score: 132 bits (332), Expect = 1.110e-35
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M+  RT SDR LL  F   V  TLLLIL PVL AI+LSLY A SF+S R WVGL+NY RI+ D  FWH+L VGL+F+ + I  QV+LG+ FALLLDQ FPGR L+RGI +LP
Sbjct:    1 MQSFRTSSDRRLLMLFIVCVGATLLLILGPVLHAIQLSLYEATSFVSARKWVGLSNYARIIVDPAFWHSLTVGLVFSVSAIVLQVLLGIAFALLLDQSFPGRALMRGIAILP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: UPI001F23E459 (sugar ABC transporter permease n=2 Tax=unclassified Polynucleobacter TaxID=2640945 RepID=UPI001F23E459)

HSP 1 Score: 131 bits (329), Expect = 3.130e-35
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M+  RT SD+ L WAF A V+V LLLIL+PVL AI+LS YH+ESF+S + WVG+ NY RIL++  FW AL VGL+F   TI  QV LG+ FAL LD+ FPG P++RG+ +LP
Sbjct:    1 MQGFRTPSDKVLKWAFIASVSVVLLLILLPVLHAIQLSFYHSESFVSNKNWVGIGNYVRILNEIIFWKALSVGLIFGCLTIILQVCLGIAFALFLDRNFPGIPIIRGLVILP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: A0A4Q6GFG1_9PROT (Sugar ABC transporter permease n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6GFG1_9PROT)

HSP 1 Score: 128 bits (322), Expect = 3.460e-34
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M   RT SD+ LL AF A VAVTLLLIL+PVL AI LS Y +ESFIS RTWVGL NY R+L ++ FW AL +G +F+  TI  QV LG+  ALLLDQ F GRP+VRG+ +LP
Sbjct:    1 MLSFRTTSDKLLLAAFVASVAVTLLLILIPVLHAIELSFYRSESFISERTWVGLGNYLRVLQEDGFWRALGIGAVFSLLTIVLQVTLGIGCALLLDQPFFGRPVVRGLAMLP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: A0A0Q8PEV6_9BURK (ABC transporter permease n=2 Tax=Noviherbaspirillum TaxID=1344552 RepID=A0A0Q8PEV6_9BURK)

HSP 1 Score: 125 bits (314), Expect = 5.390e-33
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M   RT SD+ LL AF A VAVTL+LIL PVL AI+LS Y +ESF+S RTWVGL NY R+L +  FW A  +G+ F+  TI  QV LG+  ALLLDQ F GRP++RG+ VLP
Sbjct:    1 MLSFRTNSDKLLLVAFVASVAVTLVLILFPVLHAIQLSFYRSESFVSERTWVGLGNYLRMLGESGFWRAFGIGITFSVVTILLQVTLGIACALLLDQPFFGRPVIRGLAVLP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: A0A168SN83_9CYAN (ABC transporter permease n=1 Tax=Phormidium willei BDU 130791 TaxID=399101 RepID=A0A168SN83_9CYAN)

HSP 1 Score: 124 bits (311), Expect = 1.470e-32
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M+R  T SDR +L  F A V  T +LILVPV  A++LS Y + SF+    W GL NY R+L+ + FWHAL VGL FA A IA QV+LGVLFALLLD  F GRPLVRGI VLP
Sbjct:    1 MRRFSTPSDRVILGLFLAAVLATGVLILVPVFHAVQLSFYSSSSFVEAPAWAGLDNYARVLASDDFWHALGVGLTFAGAAIALQVLLGVLFALLLDLPFRGRPLVRGIAVLP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: A0A418WYV8_9BURK (Sugar ABC transporter permease n=1 Tax=Noviherbaspirillum cavernae TaxID=2320862 RepID=A0A418WYV8_9BURK)

HSP 1 Score: 122 bits (305), Expect = 1.180e-31
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M   RT SD+ LL  F A VAVTL+LIL P L AI+LS Y +ESF+S RTW+G+ NY R+L++  FW A  +GL F+  TI  QVVLG+  ALLLDQ F GRP++RG+ +LP
Sbjct:    1 MLSFRTTSDKLLLVFFIASVAVTLVLILFPALHAIQLSFYQSESFVSARTWIGIGNYLRVLNEPGFWRAFLIGLNFSVLTIVLQVVLGIACALLLDQPFFGRPVIRGLAILP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: UPI0013C339BB (sugar ABC transporter permease n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI0013C339BB)

HSP 1 Score: 116 bits (291), Expect = 1.410e-29
Identity = 61/112 (54.46%), Postives = 76/112 (67.86%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M+   T SDR +L  F A V  T  L+LVPV  A++LS Y + SF+   TW G  NY R+LSD  FWH+LRVG +FA   I  QVVLG++FALLL++ F GRP+VRGI VLP
Sbjct:    1 MRHFSTPSDRIILAMFLAAVLTTAGLVLVPVFHAVQLSFYSSTSFVGEATWAGWDNYLRVLSDSDFWHSLRVGFIFAGFAILFQVVLGIIFALLLNKPFRGRPMVRGIAVLP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: A0A4R6QT24_9BURK (Multiple sugar transport system permease protein n=1 Tax=Paucibacter toxinivorans TaxID=270368 RepID=A0A4R6QT24_9BURK)

HSP 1 Score: 107 bits (266), Expect = 7.050e-26
Identity = 58/112 (51.79%), Postives = 72/112 (64.29%), Query Frame = 1

Query:    1 MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            M+   T +DR +L AF   + +   LI VPVL A+ LS Y AESFIS R WVGLANYTR+L+D  FWHA  +GL FA   +  Q++LG+ FA LL+    GR  VRG  VLP
Sbjct:    1 MRDFTTPTDRLILGAFVLSILLVGALIAVPVLHAVELSFYKAESFISARQWVGLANYTRVLADPAFWHAFALGLGFALIAMGLQLLLGIGFAQLLNLPLRGRAFVRGAVVLP 112

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BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Match: A0A848K3U0_9HYPH (Multiple sugar transport system permease protein n=3 Tax=Xanthobacteraceae TaxID=335928 RepID=A0A848K3U0_9HYPH)

HSP 1 Score: 103 bits (256), Expect = 1.780e-24
Identity = 54/106 (50.94%), Postives = 75/106 (70.75%), Query Frame = 1

Query:   22 SDRALLWAF-GAGVAVTLLLILVPVLDAIRLSLYHAESFISVRTWVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFPGRPLVRGITVLP 336
            S +A +++F   G+AVT LLI+ PV+ A+ LS Y  +SF+    W GL NYTR+LS   FW AL  G +++F TI  QVVLG+ FAL+L+Q FPGR +VRG+++LP
Sbjct:    2 SSKATIYSFLFLGLAVTALLIVAPVVYAVSLSFYQMDSFVGAPKWAGLDNYTRMLSQWVFWRALINGFIYSFGTIIFQVVLGIGFALVLNQVFPGRNIVRGLSILP 107

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig56249.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI00188FDA96	1.570e-44	68.75	sugar ABC transporter permease n=1 Tax=Diaphorobac...	[more]
UPI001F36E7C6	1.110e-35	61.61	sugar ABC transporter permease n=1 Tax=Achromobact...	[more]
UPI001F23E459	3.130e-35	58.04	sugar ABC transporter permease n=2 Tax=unclassifie...	[more]
A0A4Q6GFG1_9PROT	3.460e-34	61.61	Sugar ABC transporter permease n=1 Tax=Proteobacte...	[more]
A0A0Q8PEV6_9BURK	5.390e-33	58.93	ABC transporter permease n=2 Tax=Noviherbaspirillu...	[more]
A0A168SN83_9CYAN	1.470e-32	59.82	ABC transporter permease n=1 Tax=Phormidium willei...	[more]
A0A418WYV8_9BURK	1.180e-31	56.25	Sugar ABC transporter permease n=1 Tax=Noviherbasp...	[more]
UPI0013C339BB	1.410e-29	54.46	sugar ABC transporter permease n=1 Tax=Algihabitan...	[more]
A0A4R6QT24_9BURK	7.050e-26	51.79	Multiple sugar transport system permease protein n...	[more]
A0A848K3U0_9HYPH	1.780e-24	50.94	Multiple sugar transport system permease protein n...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig56249	contig	P-wetherbeei_contig56249:3..338 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	1131814.JAFO01000001_gene4261
PFAMs	BPD_transp_1
Model size	336
Max annot lvl	28211\|Alphaproteobacteria
KEGG ko	ko:K02025
KEGG TC	3.A.1.1
KEGG Module	M00207
Hectar predicted targeting category	signal peptide
Exons	1
Evalue	2.92e-25
EggNOG OGs	COG1175@1\|root,COG1175@2\|Bacteria,1MWB7@1224\|Proteobacteria,2U351@28211\|Alphaproteobacteria,3F1IJ@335928\|Xanthobacteraceae
Description	Binding-protein-dependent transport system inner membrane component
Cds size	336
COG category	G
BRITE	ko00000,ko00002,ko02000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186836.8283622-CDS-P-wetherbeei_contig56249:2..338	1683186836.8283622-CDS-P-wetherbeei_contig56249:2..338	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig56249 3..338 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig56249.1.1	prot_P-wetherbeei_contig56249.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig56249 3..338 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig56249:3..338-
coding sequence from alignment at P-wetherbeei_contig56249:3..338-

protein sequence of mRNA_P-wetherbeei_contig56249.1.1

>prot_P-wetherbeei_contig56249.1.1 ID=prot_P-wetherbeei_contig56249.1.1|Name=mRNA_P-wetherbeei_contig56249.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MKRIRTGSDRALLWAFGAGVAVTLLLILVPVLDAIRLSLYHAESFISVRT
WVGLANYTRILSDETFWHALRVGLLFAFATIAAQVVLGVLFALLLDQQFP
GRPLVRGITVLP

mRNA from alignment at P-wetherbeei_contig56249:3..338-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig56249.1.1 ID=mRNA_P-wetherbeei_contig56249.1.1|Name=mRNA_P-wetherbeei_contig56249.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig56249:3..338- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGCATACGAACTGGCAGCGATCGCGCGCTGCTGTGGGCCTTCGG
CGCCGGGGTGGCGGTCACGCTGCTGCTCATCCTGGTGCCGGTGCTCGACG
CGATCCGGCTGAGCCTGTACCACGCCGAGTCCTTCATCTCGGTGCGGACC
TGGGTGGGCCTGGCCAACTACACCCGCATCCTGTCCGACGAGACGTTCTG
GCACGCCCTGCGCGTGGGCCTGCTGTTCGCGTTCGCCACCATCGCGGCGC
AGGTCGTGCTGGGCGTGCTGTTCGCGCTGCTGCTGGACCAGCAGTTCCCA
GGGCGCCCTCTGGTGCGCGGCATCACGGTGCTGCCC

Coding sequence (CDS) from alignment at P-wetherbeei_contig56249:3..338-

>mRNA_P-wetherbeei_contig56249.1.1 ID=mRNA_P-wetherbeei_contig56249.1.1|Name=mRNA_P-wetherbeei_contig56249.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig56249:3..338- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGCATACGAACTGGCAGCGATCGCGCGCTGCTGTGGGCCTTCGG
CGCCGGGGTGGCGGTCACGCTGCTGCTCATCCTGGTGCCGGTGCTCGACG
CGATCCGGCTGAGCCTGTACCACGCCGAGTCCTTCATCTCGGTGCGGACC
TGGGTGGGCCTGGCCAACTACACCCGCATCCTGTCCGACGAGACGTTCTG
GCACGCCCTGCGCGTGGGCCTGCTGTTCGCGTTCGCCACCATCGCGGCGC
AGGTCGTGCTGGGCGTGCTGTTCGCGCTGCTGCTGGACCAGCAGTTCCCA
GGGCGCCCTCTGGTGCGCGGCATCACGGTGCTGCCC