mRNA_P-wetherbeei_contig56238.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56238.1.1
Unique NamemRNA_P-wetherbeei_contig56238.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: UPI001FAA5D4D (AAA family ATPase n=1 Tax=Nocardioides sp. SR21 TaxID=2919501 RepID=UPI001FAA5D4D)

HSP 1 Score: 169 bits (429), Expect = 1.600e-46
Identity = 86/115 (74.78%), Postives = 100/115 (86.96%), Query Frame = 1
Query:   13 FDAFVPRLVREWIL-DDAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLGEL 354
            F+ +VPRLVREW L DD+   HRR+ GTLVFADVSGFTKMS+RLSR+GKVGAE I GVIE+CFT+LL VA +FGGTL+QFGGDAVLLF+R   HE RAA+A+LEMRRT+RSLGEL
Sbjct:    7 FEVYVPRLVREWALHDDSTSLHRRMPGTLVFADVSGFTKMSERLSRQGKVGAENIVGVIESCFTRLLAVASSFGGTLVQFGGDAVLLFFRDTAHEQRAAAASLEMRRTIRSLGEL 121          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: A0A3D0RY52_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A3D0RY52_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 7.530e-46
Identity = 85/118 (72.03%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    7 GVFDAFVPRLVREWILDDAELR--HRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLGEL 354
            G F+ +VP+LVREW  D AE    HR L GTLVFADVSGFTK+S+RL++RGKVGAE+I  VIE CFT+LLDVA + GGTL+QFGGDAVLLF+RGAGHE+RAA+AALEMRRT+RSLG +
Sbjct:    6 GPFELYVPQLVREWAADGAESASLHRSLPGTLVFADVSGFTKISERLAKRGKVGAESIVEVIEACFTRLLDVADSAGGTLIQFGGDAVLLFFRGAGHELRAAAAALEMRRTIRSLGAM 123          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: A0A523EM26_9BACT (Adenylate/guanylate cyclase domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523EM26_9BACT)

HSP 1 Score: 125 bits (315), Expect = 3.450e-33
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 1
Query:   13 FDAFVPRLVREWILD-DAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLG 348
            F  +VPR+VREW+   D    H+ + GT VF DVSGFT+MS+R++R GKVGAE + G+I   F+QLL+ A+ +GG L++FGGDA+LLF+RG  HE R A+A+L MR T+R +G
Sbjct:   26 FAPYVPRIVREWLNSPDPTSMHQSIEGTAVFVDVSGFTRMSERMARLGKVGAEEVTGIIGDTFSQLLEEAYAYGGRLIKFGGDALLLFFRGDEHERRGAAASLAMRATLRRIG 138          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: A0A523EX00_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523EX00_9BACT)

HSP 1 Score: 125 bits (315), Expect = 3.700e-31
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 1
Query:   13 FDAFVPRLVREWILD-DAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLG 348
            F  +VPR+VREW+   D    H+ + GT VF DVSGFT+MS+R++R GKVGAE + G+I   F+QLL+ A+ +GG L++FGGDA+LLF+RG  HE R A+A+L MR T+R +G
Sbjct:   26 FAPYVPRIVREWLNSPDPTSMHQSIEGTAVFVDVSGFTRMSERMARLGKVGAEEVTGIIGDTFSQLLEEAYAYGGRLIKFGGDALLLFFRGDEHERRGAAASLAMRTTLRRIG 138          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: A0A2V2SH78_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V2SH78_9BACT)

HSP 1 Score: 121 bits (304), Expect = 1.130e-29
Identity = 55/111 (49.55%), Postives = 83/111 (74.77%), Query Frame = 1
Query:   22 FVPRLVREWILDDAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLGEL 354
            +VPRL  EW+ D  E R+ ++ G+L F D+SGFT +++RLSR+GKVGAE +  ++ +CF + L+ A+ FG  ++++GGDAVLL ++GA HE R+A AA EM+RTMR +G +
Sbjct:   24 YVPRLALEWLRDHPERRYTQIEGSLAFVDISGFTNLTERLSRKGKVGAEEMNQILNSCFGEFLNSAYDFGAGVIKWGGDAVLLLFQGAEHEARSARAAWEMQRTMRRVGRI 134          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: UPI001F52D2CB (tetratricopeptide repeat protein n=1 Tax=Microbacterium sp. H1-D42 TaxID=2925844 RepID=UPI001F52D2CB)

HSP 1 Score: 120 bits (302), Expect = 2.100e-29
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    7 GVFDAFVPRLVREWILDDAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSL 345
             V  AF PR+V EW   D++  HRR+ GT+VFAD+SGFT++++RL+RRG+VGAE ++  ++  F  LL  A + G  LL++GGDAVLLF+RG  H VRAA AA  MR  +R L
Sbjct:   10 AVLSAFAPRIVGEWSAGDSQRGHRRMPGTMVFADISGFTRLTERLARRGRVGAELLSDALDLTFATLLAPAFSDGADLLKWGGDAVLLFFRGEHHAVRAARAAHRMRAALREL 122          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: A0A7Y3DFN6_9ACTN (Adenylate/guanylate cyclase domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3DFN6_9ACTN)

HSP 1 Score: 111 bits (277), Expect = 2.460e-29
Identity = 53/112 (47.32%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   13 FDAFVPRLVREWILDDAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLG 348
            F+ + PRL+  W     E RH+ L GT+VF+D+SGFT +S+RL+++G+VG+E +A  +   F+++LDVA   GG LL+FGGDA+LL + G  H VR A+AA EM+R +  +G
Sbjct:    7 FERYTPRLLTSW---PDETRHQSLPGTMVFSDISGFTALSERLAKKGRVGSEEVAAALNLVFSKMLDVAIGRGGDLLKFGGDALLLLFTGEDHGVRGATAAFEMKRRLSQVG 115          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: UPI00056728A4 (hypothetical protein n=1 Tax=Knoellia aerolata TaxID=442954 RepID=UPI00056728A4)

HSP 1 Score: 114 bits (284), Expect = 4.650e-29
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   13 FDAFVPRLVREWILDDAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSL 345
            FDA+VPRL+  W+  +   RHRR+ G++ F D+SGFT +++RL+RRGKVGAE ++  ++  F  LL  A   G  LL++GGDAVLL + G  H  RAA AA  MR T+R L
Sbjct:   25 FDAYVPRLLAAWLTHEPGTRHRRVDGSIAFVDISGFTALTERLARRGKVGAELMSDTLDRTFDALLSAAREDGADLLKWGGDAVLLLFEGEDHPARAARAAHRMRATLRDL 135          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: A0A7Y2IM82_9ACTN (AAA family ATPase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2IM82_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 5.320e-29
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 1
Query:   10 VFDAFVPRLVREWILDDAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLGEL 354
            V   +VPRL+  W   +AE+ ++R+ GT+VF D+SGFT MS+RL+RRG+VGAE +  V+ T FT+LL VAH +GG LL+FGGDA+LL ++G+ H  R   AA  MRR +RS+G L
Sbjct:    5 VHRTYVPRLLDSW--PEAEV-YQRVMGTMVFVDISGFTAMSERLARRGRVGAEEVVSVLNTVFTELLTVAHAYGGDLLKFGGDALLLLFQGSEHARRGCRAASLMRRRLRSVGRL 116          
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Match: A0A7W0NJG1_9ACTN (AAA family ATPase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0NJG1_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 5.330e-29
Identity = 61/115 (53.04%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    4 TGVFDAFVPRLVREWILDDAELRHRRLAGTLVFADVSGFTKMSDRLSRRGKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVRAASAALEMRRTMRSLG 348
            +G    +VPRL  EW+ D+ E   R + GTL F D+SGFT MS+RL+R GKVGAE +  V+   F+ LLD A+ +GG LL+FGGDA+LL Y G  H  RA  AA +MRRT+R LG
Sbjct:   20 SGELVPYVPRLTIEWLRDEPERLWREVDGTLAFVDISGFTAMSERLARFGKVGAEEVTEVMNGVFSSLLDDAYAYGGGLLKFGGDALLLLYEGEEHAPRAVRAAHKMRRTLRELG 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56238.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FAA5D4D1.600e-4674.78AAA family ATPase n=1 Tax=Nocardioides sp. SR21 Ta... [more]
A0A3D0RY52_9ACTN7.530e-4672.03Uncharacterized protein n=1 Tax=Nocardioides sp. T... [more]
A0A523EM26_9BACT3.450e-3353.98Adenylate/guanylate cyclase domain-containing prot... [more]
A0A523EX00_9BACT3.700e-3153.98Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
A0A2V2SH78_9BACT1.130e-2949.55Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
UPI001F52D2CB2.100e-2952.21tetratricopeptide repeat protein n=1 Tax=Microbact... [more]
A0A7Y3DFN6_9ACTN2.460e-2947.32Adenylate/guanylate cyclase domain-containing prot... [more]
UPI00056728A44.650e-2949.55hypothetical protein n=1 Tax=Knoellia aerolata Tax... [more]
A0A7Y2IM82_9ACTN5.320e-2953.04AAA family ATPase n=1 Tax=Acidimicrobiia bacterium... [more]
A0A7W0NJG1_9ACTN5.330e-2953.04AAA family ATPase n=1 Tax=Actinomycetia bacterium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56238contigP-wetherbeei_contig56238:25..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1380390.JIAT01000013_gene145
PFAMsAAA_16,Guanylate_cyc,TPR_12
Model size354
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.53e-25
EggNOG OGsCOG0457@1|root,COG2114@1|root,COG0457@2|Bacteria,COG2114@2|Bacteria,2GJRI@201174|Actinobacteria
DescriptionAdenylyl cyclase class-3 4 guanylyl cyclase
Cds size354
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.752231-CDS-P-wetherbeei_contig56238:24..3781683186836.752231-CDS-P-wetherbeei_contig56238:24..378Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56238 25..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56238.1.1prot_P-wetherbeei_contig56238.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56238 25..378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56238.1.1

>prot_P-wetherbeei_contig56238.1.1 ID=prot_P-wetherbeei_contig56238.1.1|Name=mRNA_P-wetherbeei_contig56238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MTGVFDAFVPRLVREWILDDAELRHRRLAGTLVFADVSGFTKMSDRLSRR
GKVGAETIAGVIETCFTQLLDVAHTFGGTLLQFGGDAVLLFYRGAGHEVR
AASAALEMRRTMRSLGEL
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mRNA from alignment at P-wetherbeei_contig56238:25..378-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56238.1.1 ID=mRNA_P-wetherbeei_contig56238.1.1|Name=mRNA_P-wetherbeei_contig56238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig56238:25..378- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGGCGTCTTCGACGCGTTCGTCCCCCGACTCGTTCGCGAATGGAT CCTCGACGATGCCGAGCTTCGGCATCGTCGACTCGCCGGGACCCTGGTGT TCGCCGACGTCTCCGGGTTCACGAAGATGTCCGACCGCCTGTCGCGGCGC GGCAAGGTGGGCGCCGAGACGATCGCCGGGGTGATCGAGACGTGCTTCAC GCAATTGCTCGACGTGGCTCACACCTTCGGCGGCACGCTGCTGCAGTTCG GGGGCGACGCTGTGCTGTTGTTCTACCGAGGCGCCGGCCACGAGGTCCGA GCGGCCTCGGCCGCGCTCGAGATGCGGCGGACGATGCGTTCGCTCGGCGA GCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56238:25..378-

>mRNA_P-wetherbeei_contig56238.1.1 ID=mRNA_P-wetherbeei_contig56238.1.1|Name=mRNA_P-wetherbeei_contig56238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig56238:25..378- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGGCGTCTTCGACGCGTTCGTCCCCCGACTCGTTCGCGAATGGAT
CCTCGACGATGCCGAGCTTCGGCATCGTCGACTCGCCGGGACCCTGGTGT
TCGCCGACGTCTCCGGGTTCACGAAGATGTCCGACCGCCTGTCGCGGCGC
GGCAAGGTGGGCGCCGAGACGATCGCCGGGGTGATCGAGACGTGCTTCAC
GCAATTGCTCGACGTGGCTCACACCTTCGGCGGCACGCTGCTGCAGTTCG
GGGGCGACGCTGTGCTGTTGTTCTACCGAGGCGCCGGCCACGAGGTCCGA
GCGGCCTCGGCCGCGCTCGAGATGCGGCGGACGATGCGTTCGCTCGGCGA
GCTG
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