mRNA_P-wetherbeei_contig56214.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56214.1.1
Unique NamemRNA_P-wetherbeei_contig56214.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A1I4F0M9_9PROT (FAD binding domain-containing protein n=5 Tax=Acetobacteraceae TaxID=433 RepID=A0A1I4F0M9_9PROT)

HSP 1 Score: 172 bits (436), Expect = 5.280e-48
Identity = 91/169 (53.85%), Postives = 114/169 (67.46%), Query Frame = 1
Query:   10 NRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQLRVGGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            N PA+M+FD  Y   +S A   PGAP+P+WV  A TL+ELA KIG+D A LEATV +FN   A G D D GRG+S F+RSTAGD   A+  LG L  AP+ A+++R+GGI +AG+       V HVRG  I GLYACGN AAPT++G GYQ G S+   + FG+LAA H
Sbjct:  366 NLPAWMLFDAQYFSRYSFARRPPGAPIPEWVIQAPTLRELAAKIGLDGAALEATVARFNEGAARGEDSDHGRGSSAFARSTAGDPNAAHPNLGTLAQAPFCAVRIRLGGISAAGLLTDPDARVQHVRGRPIQGLYACGNAAAPTESGAGYQAGVSLMRGLTFGWLAARH 534          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A317FD73_9PROT (FAD_binding_2 domain-containing protein n=3 Tax=Acetobacteraceae TaxID=433 RepID=A0A317FD73_9PROT)

HSP 1 Score: 158 bits (399), Expect = 1.530e-42
Identity = 83/169 (49.11%), Postives = 110/169 (65.09%), Query Frame = 1
Query:   10 NRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQLRVGGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            N PA+M+FD  Y + +S A   PGA +PDWV  A TL ELA  +G+DA  L  T+ +FN     G DP+ GRG+S F+RSTAGD    +  LG L + P+ A+++++GGI +AG+       V HVRG  IPGLYACGN AAPT++G GYQ G S+   + FG+LAA H
Sbjct:  379 NLPAWMLFDAQYLRRYSFARRPPGADLPDWVMRADTLPELAGVLGLDATALADTIARFNAGAERGEDPEHGRGSSAFARSTAGDPHAKHPNLGTLAEPPFCAVRIKLGGISAAGLLTDPDARVQHVRGRPIPGLYACGNAAAPTESGAGYQAGISLMRGLTFGWLAARH 547          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A432JG47_9CHLR (FAD_binding_2 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A432JG47_9CHLR)

HSP 1 Score: 139 bits (350), Expect = 7.250e-37
Identity = 78/173 (45.09%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 RLVNRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGD-AKKANGQLGALEDAPYYAIQLRVGGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            R VN P F+VFD  Y   + +    PG  VPDW+    ++K LA ++GVD  GL  T+Q+FN +  AG D DFGRG   F+ S +GD   K N  LG L   PY+ + L      S  +      +VMH+RG AIPGLYACG+ +A    G+GYQ G  +G AM FGYLAA H
Sbjct:  175 RYVNVPCFLVFDQTYLDKYGLGSIQPGDEVPDWLIKDDSIKGLAERLGVDGEGLTKTIQRFNKFAEAGKDEDFGRGEFPFANSVSGDLTNKPNPNLGPLNQPPYFGLPLEPAAAGSTRLVTNELAQVMHLRGQAIPGLYACGSASAHY-YGIGYQAGCELGGAMTFGYLAAKH 346          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A5N9FNP4_9CHLR (FAD-dependent oxidoreductase n=6 Tax=root TaxID=1 RepID=A0A5N9FNP4_9CHLR)

HSP 1 Score: 140 bits (352), Expect = 7.450e-36
Identity = 78/173 (45.09%), Postives = 102/173 (58.96%), Query Frame = 1
Query:    1 RLVNRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGD-AKKANGQLGALEDAPYYAIQLRVGGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            R VN P F+VFD  Y   + +    PG  VPDW+    T+K LA ++G+D+ GL  T+++FN + AAG D DFGRG   F+ S +GD   + N  LG L   PYY + L      S  +      +V+H+RGH IPGLYACG+ +A    GVGYQ G  +G AM FGYLAA H
Sbjct:  371 RYVNVPCFLVFDQTYLDNYGLGSIQPGQDVPDWLVRNKTIKGLAKELGIDSNGLTKTIRRFNRFAAAGKDKDFGRGEFPFANSVSGDLTHQPNPNLGPLNQPPYYGLPLEPAAAGSTRLMTNEFAQVVHLRGHPIPGLYACGSASAHY-YGVGYQAGCELGGAMTFGYLAARH 542          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A7J5F0J3_9DELT (FAD-binding protein n=1 Tax=Kofleriaceae bacterium TaxID=2212474 RepID=A0A7J5F0J3_9DELT)

HSP 1 Score: 140 bits (352), Expect = 7.980e-36
Identity = 84/172 (48.84%), Postives = 104/172 (60.47%), Query Frame = 1
Query:   10 NRPAFMVFDDHYRQLFSVAGGVPGAPVPDWV-SSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQLR-VG-GIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            N P F+VFD  YR  ++ A  +PG  VPD V + A T +ELA K+GVD A LEAT+ +FN     G DP FGRG+  ++    GD  + N  LG LE  P+Y IQL  VG G+ S G+       V HVRGHAIPGLYACGN+A   DTG GYQ G S    M +G++A  H
Sbjct:  377 NYPPFLVFDQQYRDKYAFATYLPGMEVPDEVLARAQTPRELAEKLGVDGAALEATIAQFNVGAREGKDPRFGRGSYPWAAMMTGDKSRPNPNLGPLEKPPFYGIQLAPVGVGVNSVGLETDGFARVKHVRGHAIPGLYACGNSAVALDTGAGYQSGLSNLRGMTWGWIAGRH 548          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A432KAY2_9CHLR (FAD_binding_2 domain-containing protein n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A432KAY2_9CHLR)

HSP 1 Score: 139 bits (350), Expect = 1.490e-35
Identity = 78/173 (45.09%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 RLVNRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGD-AKKANGQLGALEDAPYYAIQLRVGGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            R VN P F+VFD  Y   + +    PG  VPDW+    ++K LA ++GVD  GL  T+Q+FN +  AG D DFGRG   F+ S +GD   K N  LG L   PY+ + L      S  +      +VMH+RG AIPGLYACG+ +A    G+GYQ G  +G AM FGYLAA H
Sbjct:  375 RYVNVPCFLVFDQTYLDKYGLGSIQPGDEVPDWLIKDDSIKGLAERLGVDGEGLTKTIQRFNKFAEAGKDEDFGRGEFPFANSVSGDLTNKPNPNLGPLNQPPYFGLPLEPAAAGSTRLVTNELAQVMHLRGQAIPGLYACGSASAHY-YGIGYQAGCELGGAMTFGYLAAKH 546          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A524LBL4_9DELT (FAD-binding protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A524LBL4_9DELT)

HSP 1 Score: 137 bits (346), Expect = 6.360e-35
Identity = 78/174 (44.83%), Postives = 108/174 (62.07%), Query Frame = 1
Query:    4 LVNRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVS-SAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQLRV--GGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            L N P F++FD+ YR+ F +    PG P+P+ ++  A + + LA  +G+DA GLEAT+ +FNG+   G D DFGRG   +S    GD ++ N  LGALE APYY ++L +   GI S G+       V+H RGHAIPGLYA GN+AA  D G GYQ G +   A+ +G++A  H
Sbjct:  381 LPNLPCFLIFDESYRERFPIGTTPPGVPLPEALAVRAESPRALAGLLGIDADGLEATLARFNGFAREGVDRDFGRGRYGWSAGMVGDGQQKNPSLGALEKAPYYGMRLSLVGAGINSHGLRTDPFARVVHARGHAIPGLYAAGNSAALLDLGAGYQSGVANLRALTWGFVAGRH 554          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: UPI00131EB791 (FAD-dependent oxidoreductase n=1 Tax=Acidisphaera sp. S103 TaxID=1747223 RepID=UPI00131EB791)

HSP 1 Score: 137 bits (344), Expect = 9.500e-35
Identity = 80/167 (47.90%), Postives = 100/167 (59.88%), Query Frame = 1
Query:   10 NRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQLRVGGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAA 510
            N P F++FD  Y +  S AG  PGAP+P WV+S +TL  +A  +G+D AGL+ATV +FN     G D  F RG +   R     A  A   LG +E AP+Y I+L    + SAGV       V+HVRG  IPGLYA GN AA T+TG GYQ G S+ SAM FG +AA
Sbjct:  365 NLPCFLIFDAQYARGHSFAGRKPGAPIPSWVASGSTLSAVAEALGIDPAGLQATVDRFNADARQGTDSAFHRGETA--RGLTRFAPGAT--LGPIEQAPFYGIELHPTSLASAGVLADQRARVLHVRGMPIPGLYAIGNAAARTETGSGYQTGFSLASAMTFGLIAA 527          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A5B0GB44_9BURK (FAD-dependent oxidoreductase n=1 Tax=Paraburkholderia panacisoli TaxID=2603818 RepID=A0A5B0GB44_9BURK)

HSP 1 Score: 136 bits (342), Expect = 2.080e-34
Identity = 79/171 (46.20%), Postives = 106/171 (61.99%), Query Frame = 1
Query:   10 NRPAFMVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQLRVGGIVSAGVTIGNH-GEVMHVRGHAIPGLYACGNTAAPTDTGVGYQG-GASIGSAMIFGYLAAVH 516
            N PA+ + D  YR  + +   +P  P PDW+ SA TL+ LA K+G+DA GL ATV ++NG+V+AG D DFG+G S F R   GD +     LG +E  P+YAI +  G + + G    NH  +V+HV G  IPGLYA GN AA   TG GY   GA++G AM FGY+A ++
Sbjct:  371 NLPAWAILDAQYRSKYVLGTTMPEDPDPDWLISAGTLEGLAAKVGIDAEGLRATVDRWNGFVSAGVDDDFGKGRSAFDRFQ-GDREAGIANLGTIEKPPFYAIPIHSGALGTKGGPKTNHKAQVLHVSGAPIPGLYAAGNVAASI-TGPGYYARGATLGPAMTFGYIAGIN 539          
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Match: A0A2D6N0R5_9DELT (FAD_binding_2 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6N0R5_9DELT)

HSP 1 Score: 135 bits (340), Expect = 4.060e-34
Identity = 78/174 (44.83%), Postives = 104/174 (59.77%), Query Frame = 1
Query:    4 LVNRPAFMVFDDHYRQLFSVAGGVPGAPVP-DWVSSAATLKELAVKIGVDAAGLEATVQKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQLR-VG-GIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGASIGSAMIFGYLAAVH 516
            L N P+FMVFD +YR+ + V   VPG   P  +V   AT +ELA K+G+D  G E T+Q FN +   G DPDFGRG  +++    GD    N  L  ++DAP+Y ++L  +G GI S G+      + +HVRGHAIPG Y  GN+AA  D G GYQ G S   A+ +GY+A  H
Sbjct:  376 LPNTPSFMVFDTNYRERYPVGSFVPGQDFPAGFVEEGATPRELAQKLGIDPEGFERTLQHFNAHAEKGEDPDFGRGQYIWANRLCGDPSYPNPNLAPVKDAPFYGLRLTPIGVGINSHGLRFDRDAQAVHVRGHAIPGFYVVGNSAALLDLGGGYQSGMSNLRAITWGYIAGKH 549          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56214.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I4F0M9_9PROT5.280e-4853.85FAD binding domain-containing protein n=5 Tax=Acet... [more]
A0A317FD73_9PROT1.530e-4249.11FAD_binding_2 domain-containing protein n=3 Tax=Ac... [more]
A0A432JG47_9CHLR7.250e-3745.09FAD_binding_2 domain-containing protein n=1 Tax=Ch... [more]
A0A5N9FNP4_9CHLR7.450e-3645.09FAD-dependent oxidoreductase n=6 Tax=root TaxID=1 ... [more]
A0A7J5F0J3_9DELT7.980e-3648.84FAD-binding protein n=1 Tax=Kofleriaceae bacterium... [more]
A0A432KAY2_9CHLR1.490e-3545.09FAD_binding_2 domain-containing protein n=3 Tax=Ch... [more]
A0A524LBL4_9DELT6.360e-3544.83FAD-binding protein n=1 Tax=Myxococcales bacterium... [more]
UPI00131EB7919.500e-3547.90FAD-dependent oxidoreductase n=1 Tax=Acidisphaera ... [more]
A0A5B0GB44_9BURK2.080e-3446.20FAD-dependent oxidoreductase n=1 Tax=Paraburkholde... [more]
A0A2D6N0R5_9DELT4.060e-3444.83FAD_binding_2 domain-containing protein n=1 Tax=De... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56214contigP-wetherbeei_contig56214:4..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog525368.HMPREF0591_4549
PFAMsFAD_binding_2
Model size516
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.84e-32
EggNOG OGsCOG1053@1|root,COG1053@2|Bacteria,2GIXG@201174|Actinobacteria,236BQ@1762|Mycobacteriaceae
DescriptionSuccinate dehydrogenase fumarate reductase flavoprotein subunit
Cds size492
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.4400492-CDS-P-wetherbeei_contig56214:3..4951683186836.4400492-CDS-P-wetherbeei_contig56214:3..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56214 4..495 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.451843-UTR-P-wetherbeei_contig56214:495..5191683186836.451843-UTR-P-wetherbeei_contig56214:495..519Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56214 496..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56214.1.1prot_P-wetherbeei_contig56214.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56214 4..495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56214.1.1

>prot_P-wetherbeei_contig56214.1.1 ID=prot_P-wetherbeei_contig56214.1.1|Name=mRNA_P-wetherbeei_contig56214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
MVFDDHYRQLFSVAGGVPGAPVPDWVSSAATLKELAVKIGVDAAGLEATV
QKFNGYVAAGADPDFGRGTSVFSRSTAGDAKKANGQLGALEDAPYYAIQL
RVGGIVSAGVTIGNHGEVMHVRGHAIPGLYACGNTAAPTDTGVGYQGGAS
IGSAMIFGYLAAVH
back to top

mRNA from alignment at P-wetherbeei_contig56214:4..519-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56214.1.1 ID=mRNA_P-wetherbeei_contig56214.1.1|Name=mRNA_P-wetherbeei_contig56214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig56214:4..519- (Phaeothamnion wetherbeei SAG_119_79)
CGCCTGGTGAACCGGCCGGCTTTCATGGTGTTCGATGACCACTATCGCCA GCTCTTCTCCGTGGCCGGTGGCGTGCCGGGCGCCCCGGTGCCAGACTGGG TGTCAAGCGCCGCCACATTGAAGGAATTGGCAGTGAAGATTGGCGTGGAT GCAGCCGGGCTTGAAGCCACCGTGCAGAAGTTCAATGGCTACGTAGCCGC AGGCGCAGACCCGGATTTCGGTCGCGGTACGTCGGTGTTCTCGCGCAGTA CCGCGGGTGACGCCAAAAAGGCCAACGGGCAACTCGGCGCGCTGGAGGAC GCCCCCTACTACGCCATCCAGCTGCGCGTGGGCGGTATCGTCAGCGCCGG CGTGACCATAGGCAACCACGGCGAAGTCATGCATGTGCGCGGACACGCCA TCCCCGGCTTGTATGCCTGCGGCAATACTGCAGCCCCCACCGACACCGGC GTGGGCTACCAGGGTGGCGCGTCCATCGGCAGCGCCATGATCTTCGGCTA CCTGGCGGCGGTACAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56214:4..519-

>mRNA_P-wetherbeei_contig56214.1.1 ID=mRNA_P-wetherbeei_contig56214.1.1|Name=mRNA_P-wetherbeei_contig56214.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig56214:4..519- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTTCGATGACCACTATCGCCAGCTCTTCTCCGTGGCCGGTGGCGT
GCCGGGCGCCCCGGTGCCAGACTGGGTGTCAAGCGCCGCCACATTGAAGG
AATTGGCAGTGAAGATTGGCGTGGATGCAGCCGGGCTTGAAGCCACCGTG
CAGAAGTTCAATGGCTACGTAGCCGCAGGCGCAGACCCGGATTTCGGTCG
CGGTACGTCGGTGTTCTCGCGCAGTACCGCGGGTGACGCCAAAAAGGCCA
ACGGGCAACTCGGCGCGCTGGAGGACGCCCCCTACTACGCCATCCAGCTG
CGCGTGGGCGGTATCGTCAGCGCCGGCGTGACCATAGGCAACCACGGCGA
AGTCATGCATGTGCGCGGACACGCCATCCCCGGCTTGTATGCCTGCGGCA
ATACTGCAGCCCCCACCGACACCGGCGTGGGCTACCAGGGTGGCGCGTCC
ATCGGCAGCGCCATGATCTTCGGCTACCTGGCGGCGGTACAC
back to top