mRNA_P-wetherbeei_contig56208.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56208.1.1
Unique NamemRNA_P-wetherbeei_contig56208.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: D9QNJ3_BRESC (KAP P-loop domain protein n=4 Tax=Brevundimonas TaxID=41275 RepID=D9QNJ3_BRESC)

HSP 1 Score: 112 bits (281), Expect = 5.300e-27
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    1 ITTLLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGTDEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIE 264
            + ++LF+W RLNG DAAE+R WTDE L   AFV+A+A D+PSESWSFG G D MGDRV RR +R N+    DILD  R+E R+ +L+E
Sbjct:  604 LISILFAWWRLNGSDAAEIRTWTDEQLGSDAFVIALAADLPSESWSFGAGWDGMGDRVQRRTLRVNLQPLEDILDTARLEARVADLLE 691          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: A0A7H1N448_9PROT (NTPase n=1 Tax=Defluviicoccus vanus TaxID=111831 RepID=A0A7H1N448_9PROT)

HSP 1 Score: 112 bits (280), Expect = 7.200e-27
Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    1 ITTLLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGTDEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRLS 279
            I  L+F+W RL    AA VR+WTDE LD  AFV+AMAR IPSESWS  MG D MGDRV RR+VR ++  Y  ILDV+R ETR+++LI+ G  S
Sbjct:  601 INLLMFAWSRLAPDGAAHVRSWTDEALDHDAFVIAMARAIPSESWSRSMGIDSMGDRVGRRSVRVDLRPYEQILDVERFETRVNQLIDAGSRS 693          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: A0A440ZFD5_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A440ZFD5_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 1.500e-19
Identity = 42/95 (44.21%), Postives = 60/95 (63.16%), Query Frame = 1
Query:    1 ITTLLFSWLRLNGRDAA-EVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGTDEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRLSP 282
            + +L+F+W R  G +   EVRAWT+  L  PAF+LA+A  +PS SWSFGM      DRV R+ +R +  AY+D++D+ R+  RI E +   RL P
Sbjct:   92 LASLIFAWRRFAGDNGVKEVRAWTESALSQPAFILALAEQMPSSSWSFGME-----DRVQRQNIRVDTAAYKDLIDIPRLYARIEEELAAARLPP 181          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: UPI0003CF47B5 (P-loop NTPase fold protein n=1 Tax=Mesorhizobium sp. LNJC384A00 TaxID=1287268 RepID=UPI0003CF47B5)

HSP 1 Score: 79.0 bits (193), Expect = 4.160e-15
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 ITTLLFSWLRLNGRDAA-EVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGTDEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRLSP 282
            + +LLF W R    D A EVR WTD  L    F+LA+A  +PS SWSFGMG     DRV R+ V+ +  AY  ++D+ R+  R+ E +   +L P
Sbjct:  603 MASLLFEWRRFADTDGAQEVRTWTDSALSQKEFLLALAEQMPSSSWSFGMG-----DRVQRQNVKVDTKAYEKLIDIPRLYARVDEELSASQLPP 692          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: A0A437GJQ6_RHIML (NTPase KAP n=1 Tax=Rhizobium meliloti TaxID=382 RepID=A0A437GJQ6_RHIML)

HSP 1 Score: 77.0 bits (188), Expect = 1.970e-14
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   10 LLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGTDEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRL 276
            +L+ W   N  DA+E RAWT  +L+D   ++ +AR +  ESWS+GMGT  +GDRVSRR+  A I    DI+D   +   +  +  EGR+
Sbjct:  603 ILYRWRDFNDDDASEPRAWTGALLEDDDSLVILARGLTGESWSYGMGTHGLGDRVSRRSTIAQISDDTDIVDPVALRQGLERVASEGRV 691          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: A0A0Q5H916_9HYPH (KAP NTPase domain-containing protein n=2 Tax=Aureimonas sp. Leaf324 TaxID=1736336 RepID=A0A0Q5H916_9HYPH)

HSP 1 Score: 70.9 bits (172), Expect = 2.900e-12
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 ITTLLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGT-DEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEE 267
            I +LL+ W   +  D+ EVRAWT   L+   FV+++AR    ESWS+ MG    +GDRV+RR+   N  +   ILDVD M+ R+ EL+++
Sbjct:  660 IVSLLYRWR--DRTDSDEVRAWTSRRLEAEGFVVSLARGAVQESWSYAMGMFGSLGDRVARRSFHRNNRSLGTILDVDAMDRRVAELLDD 747          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: A0A2L2LL64_RHIRD (NTPase n=2 Tax=Agrobacterium tumefaciens complex TaxID=1183400 RepID=A0A2L2LL64_RHIRD)

HSP 1 Score: 68.6 bits (166), Expect = 1.870e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 ITTLLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGT-DEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRLS 279
            + +LLF W    G D  E R WTDE L    FV+A AR     SWS GMG    +GD VS R +   +  YR+I+D+DR+ +R+ EL+   +++
Sbjct:  586 LMSLLFRWRDRAGLD--EARQWTDEKLASTEFVVAAARAAVKTSWSQGMGGFGFLGDTVSTRHIFVELEPYREIVDIDRLRSRVDELLASDQIN 677          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: UPI00039E4843 (P-loop NTPase fold protein n=1 Tax=Dickeya zeae TaxID=204042 RepID=UPI00039E4843)

HSP 1 Score: 68.2 bits (165), Expect = 2.560e-11
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   10 LLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGTD-EMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEE 267
            +L+SW+     D  E RAWTD +LDD   +L + + +    WS GMGT   +GDRVS+R VRA I     ++D  +    I  + ++
Sbjct:  603 ILYSWVDFMDNDPKETRAWTDSLLDDKKALLILVKAMTGSLWSMGMGTSGTLGDRVSKRTVRAQISDSTPVIDAKKFRVAIERIAKD 689          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: A0A2K4P684_ECOLX (Phage T7 exclusion protein n=2 Tax=Escherichia coli TaxID=562 RepID=A0A2K4P684_ECOLX)

HSP 1 Score: 67.0 bits (162), Expect = 6.050e-11
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   10 LLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGT-DEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRLS 279
            +L+ W+   G D  E RAWTD +LDD   +L + + +   SWS GMG    +GDRVS+R VRA I     ++D  +    I ++  +   S
Sbjct:  299 ILYRWIDFMGGDPTEARAWTDSLLDDRKALLILVKVMTGASWSMGMGGFGSLGDRVSKRTVRAQISDDSPVIDARKFRAAIEKIANDKNSS 389          
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Match: I4T132_ECOLX (KAP NTPase domain-containing protein n=17 Tax=Proteobacteria TaxID=1224 RepID=I4T132_ECOLX)

HSP 1 Score: 67.0 bits (162), Expect = 6.510e-11
Identity = 33/91 (36.26%), Postives = 49/91 (53.85%), Query Frame = 1
Query:   10 LLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMGT-DEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRLS 279
            +L+ W+   G D  E RAWTD +LDD   +L + + +   SWS GMG    +GDRVS+R VRA I     ++D  +    I ++  +   S
Sbjct:  607 ILYRWIDFMGGDPTEARAWTDSLLDDRKALLILVKVMTGASWSMGMGGFGSLGDRVSKRTVRAQISDDSPVIDARKFRAAIEKIANDKNSS 697          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56208.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D9QNJ3_BRESC5.300e-2757.95KAP P-loop domain protein n=4 Tax=Brevundimonas Ta... [more]
A0A7H1N448_9PROT7.200e-2759.14NTPase n=1 Tax=Defluviicoccus vanus TaxID=111831 R... [more]
A0A440ZFD5_9HYPH1.500e-1944.21Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
UPI0003CF47B54.160e-1542.11P-loop NTPase fold protein n=1 Tax=Mesorhizobium s... [more]
A0A437GJQ6_RHIML1.970e-1441.57NTPase KAP n=1 Tax=Rhizobium meliloti TaxID=382 Re... [more]
A0A0Q5H916_9HYPH2.900e-1242.22KAP NTPase domain-containing protein n=2 Tax=Aurei... [more]
A0A2L2LL64_RHIRD1.870e-1140.43NTPase n=2 Tax=Agrobacterium tumefaciens complex T... [more]
UPI00039E48432.560e-1136.78P-loop NTPase fold protein n=1 Tax=Dickeya zeae Ta... [more]
A0A2K4P684_ECOLX6.050e-1136.26Phage T7 exclusion protein n=2 Tax=Escherichia col... [more]
I4T132_ECOLX6.510e-1136.26KAP NTPase domain-containing protein n=17 Tax=Prot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56208contigP-wetherbeei_contig56208:225..506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog633149.Bresu_2922
PFAMsKAP_NTPase
Model size282
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.69e-28
EggNOG OGsCOG4928@1|root,COG4928@2|Bacteria,1PV0G@1224|Proteobacteria,2U6R8@28211|Alphaproteobacteria
DescriptionKAP family P-loop
Cds size282
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186836.273368-CDS-P-wetherbeei_contig56208:224..5061683186836.273368-CDS-P-wetherbeei_contig56208:224..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56208 225..506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56208.1.1prot_P-wetherbeei_contig56208.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56208 225..506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56208.1.1

>prot_P-wetherbeei_contig56208.1.1 ID=prot_P-wetherbeei_contig56208.1.1|Name=mRNA_P-wetherbeei_contig56208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
ITTLLFSWLRLNGRDAAEVRAWTDEVLDDPAFVLAMARDIPSESWSFGMG
TDEMGDRVSRRAVRANIGAYRDILDVDRMETRIHELIEEGRLSP
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mRNA from alignment at P-wetherbeei_contig56208:225..506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56208.1.1 ID=mRNA_P-wetherbeei_contig56208.1.1|Name=mRNA_P-wetherbeei_contig56208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig56208:225..506- (Phaeothamnion wetherbeei SAG_119_79)
ATTACCACGCTTCTGTTCTCCTGGCTGCGCTTGAATGGCCGGGACGCCGC CGAGGTACGGGCCTGGACGGATGAGGTGCTCGATGACCCGGCTTTCGTCC TAGCGATGGCCCGCGATATTCCGTCAGAAAGCTGGTCATTCGGCATGGGC ACCGATGAGATGGGCGACAGGGTGTCTCGCCGGGCGGTTCGCGCAAATAT TGGGGCCTATCGCGACATCTTGGATGTGGATCGCATGGAGACCCGCATAC ATGAACTGATCGAAGAGGGGCGCCTGTCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56208:225..506-

>mRNA_P-wetherbeei_contig56208.1.1 ID=mRNA_P-wetherbeei_contig56208.1.1|Name=mRNA_P-wetherbeei_contig56208.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig56208:225..506- (Phaeothamnion wetherbeei SAG_119_79)
ATTACCACGCTTCTGTTCTCCTGGCTGCGCTTGAATGGCCGGGACGCCGC
CGAGGTACGGGCCTGGACGGATGAGGTGCTCGATGACCCGGCTTTCGTCC
TAGCGATGGCCCGCGATATTCCGTCAGAAAGCTGGTCATTCGGCATGGGC
ACCGATGAGATGGGCGACAGGGTGTCTCGCCGGGCGGTTCGCGCAAATAT
TGGGGCCTATCGCGACATCTTGGATGTGGATCGCATGGAGACCCGCATAC
ATGAACTGATCGAAGAGGGGCGCCTGTCGCCG
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