mRNA_P-wetherbeei_contig562.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig562.5.1
Unique NamemRNA_P-wetherbeei_contig562.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig562.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig562contigP-wetherbeei_contig562:6799..7157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size359
Hectar predicted targeting categorysignal peptide
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.936691-UTR-P-wetherbeei_contig562:6798..68391683186835.936691-UTR-P-wetherbeei_contig562:6798..6839Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig562 6799..6839 -
1683186835.9686782-UTR-P-wetherbeei_contig562:7148..71571683186835.9686782-UTR-P-wetherbeei_contig562:7148..7157Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig562 7149..7157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.9496517-CDS-P-wetherbeei_contig562:6839..71481683186835.9496517-CDS-P-wetherbeei_contig562:6839..7148Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig562 6840..7148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig562.5.1prot_P-wetherbeei_contig562.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig562 6840..7148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig562.5.1

>prot_P-wetherbeei_contig562.5.1 ID=prot_P-wetherbeei_contig562.5.1|Name=mRNA_P-wetherbeei_contig562.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MWWGAGAAATYSAAAASMLPTAGPERLQHDRHVDAMATFAPGGILAECHQ
TGEDNSGEWHEKVANGDVVAVNDARQRPAAQNGDGATTASYRHIIPYGGT
ML*
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mRNA from alignment at P-wetherbeei_contig562:6799..7157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig562.5.1 ID=mRNA_P-wetherbeei_contig562.5.1|Name=mRNA_P-wetherbeei_contig562.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=359bp|location=Sequence derived from alignment at P-wetherbeei_contig562:6799..7157- (Phaeothamnion wetherbeei SAG_119_79)
AGCTCGTCGATGTGGTGGGGGGCAGGGGCGGCGGCAACTTACAGCGCGGC
AGCAGCAAGTATGCTGCCGACGGCAGGGCCTGAACGGCTGCAGCACGACA
GGCACGTTGACGCTATGGCGACGTTTGCGCCTGGAGGAATACTAGCGGAA
TGCCACCAGACCGGTGAAGACAACAGCGGCGAATGGCATGAAAAGGTGGC
GAACGGCGACGTAGTGGCGGTAAACGATGCCAGACAACGGCCGGCGGCCC
AAAACGGAGACGGGGCCACGACTGCTTCCTATCGTCATATCATCCCATAC
GGCGGAACTATGTTGTAGGTCACCGCACATGCAGAGCTAGTTTTTTTTAA
AAGGTGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig562:6799..7157-

>mRNA_P-wetherbeei_contig562.5.1 ID=mRNA_P-wetherbeei_contig562.5.1|Name=mRNA_P-wetherbeei_contig562.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig562:6799..7157- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGTGGGGGGCAGGGGCGGCGGCAACTTACAGCGCGGCAGCAGCAAG
TATGCTGCCGACGGCAGGGCCTGAACGGCTGCAGCACGACAGGCACGTTG
ACGCTATGGCGACGTTTGCGCCTGGAGGAATACTAGCGGAATGCCACCAG
ACCGGTGAAGACAACAGCGGCGAATGGCATGAAAAGGTGGCGAACGGCGA
CGTAGTGGCGGTAAACGATGCCAGACAACGGCCGGCGGCCCAAAACGGAG
ACGGGGCCACGACTGCTTCCTATCGTCATATCATCCCATACGGCGGAACT
ATGTTGTAG
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