mRNA_P-wetherbeei_contig56156.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56156.1.1
Unique NamemRNA_P-wetherbeei_contig56156.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56156.1.1 vs. uniprot
Match: A0A258H459_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 32-64-14 TaxID=1970492 RepID=A0A258H459_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 3.800e-7
Identity = 45/96 (46.88%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 MRLKAILLITALGITAMPAAAQAYRDDCRRERGNNQAGGAILXXXXXXXXXXXXGASGHRHDGTAXXXXXXXXXXXXXXXSSTNCDPRYYGPSASY 288
            MR KA++L++A+  TAMPA AQ Y   C+R +G+NQ GG I+              SGHR D   XXXXXXXXXXX     S NC P  Y   +SY
Sbjct:    1 MRFKALILVSAIAATAMPAFAQDYGRACQRAQGDNQIGGMIVGTIIGGVLGSQVAGSGHRSDXXXXXXXXXXXXXXGVGKDSVNCGPPRYPSGSSY 96
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56156.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A258H459_9PROT3.800e-746.88Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56156contigP-wetherbeei_contig56156:124..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size396
Hectar predicted targeting categorysignal peptide
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.503351-CDS-P-wetherbeei_contig56156:123..5191683186835.503351-CDS-P-wetherbeei_contig56156:123..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56156 124..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56156.1.1prot_P-wetherbeei_contig56156.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56156 124..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56156.1.1

>prot_P-wetherbeei_contig56156.1.1 ID=prot_P-wetherbeei_contig56156.1.1|Name=mRNA_P-wetherbeei_contig56156.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MRLKAILLITALGITAMPAAAQAYRDDCRRERGNNQAGGAILGAVLGGVL
GSNLGASGHRHDGTAVGAVLGGLAGSEIGRSSTNCDPRYYGPSASYRGSN
YPPYGRDDGRYEPGYPAYPSDYADRPAIYPPS
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mRNA from alignment at P-wetherbeei_contig56156:124..519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56156.1.1 ID=mRNA_P-wetherbeei_contig56156.1.1|Name=mRNA_P-wetherbeei_contig56156.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig56156:124..519- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCTCAAGGCAATTCTGCTCATCACTGCGCTCGGCATAACGGCGAT
GCCAGCCGCGGCCCAAGCCTATCGCGACGACTGCCGCCGGGAGCGCGGAA
ACAACCAGGCGGGAGGCGCCATCCTCGGCGCGGTCCTGGGCGGAGTTCTT
GGATCGAATCTGGGCGCGAGCGGCCACCGGCATGATGGAACGGCGGTCGG
CGCGGTCCTCGGCGGGCTGGCCGGCTCCGAAATCGGGCGCAGTTCGACGA
ATTGTGATCCGCGTTACTACGGCCCGTCGGCGTCCTATAGGGGATCGAAT
TATCCGCCCTACGGTCGGGATGATGGGAGGTACGAGCCGGGCTATCCCGC
TTATCCTTCGGATTACGCGGACCGACCGGCGATTTATCCACCGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56156:124..519-

>mRNA_P-wetherbeei_contig56156.1.1 ID=mRNA_P-wetherbeei_contig56156.1.1|Name=mRNA_P-wetherbeei_contig56156.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig56156:124..519- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCTCAAGGCAATTCTGCTCATCACTGCGCTCGGCATAACGGCGAT
GCCAGCCGCGGCCCAAGCCTATCGCGACGACTGCCGCCGGGAGCGCGGAA
ACAACCAGGCGGGAGGCGCCATCCTCGGCGCGGTCCTGGGCGGAGTTCTT
GGATCGAATCTGGGCGCGAGCGGCCACCGGCATGATGGAACGGCGGTCGG
CGCGGTCCTCGGCGGGCTGGCCGGCTCCGAAATCGGGCGCAGTTCGACGA
ATTGTGATCCGCGTTACTACGGCCCGTCGGCGTCCTATAGGGGATCGAAT
TATCCGCCCTACGGTCGGGATGATGGGAGGTACGAGCCGGGCTATCCCGC
TTATCCTTCGGATTACGCGGACCGACCGGCGATTTATCCACCGTCC
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